Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0253700.1

Overview

Field Value
Gene ID LotjaGi2g1v0253700
Transcript ID LotjaGi2g1v0253700.1
Lotus japonicus genome version Gifu v1.2
Description Outer membrane protein assembly factor BamA; TAIR: AT3G28460.1 methyltransferase; Swiss-Prot: sp|O34331|YLBH_BACSU Putative rRNA methyltransferase YlbH; TrEMBL-Plants: tr|A0A151RUH4|A0A151RUH4_CAJCA Putative rRNA methyltransferase ylbH; Found in the gene: LotjaGi2g1v0253700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:71968641..71973949) extracted from Lotus japonicus Gifu genome v1.2.

AAATGATGTTCTTCCTGTTGGTCGCTTGAGGTGGTTTTATCCAAACTCAACAACACTGGTTTCTCACAACGGTTGTGTCC ACTGTTGCCACCGTTCTCAGAGTGAAACCATTGACACTGAACCTATCAACTCACACTCACTCCACTTCCAACAACTTCAA CAATCTCACTACATTCAATGGCGGTTTTGTCCCCTCCAACACCATCACCACTCCTTCTAAACACCAAAGCAAATTTCGGG TCACCATCATCACCTTCACCTCTTCCTCTTATCACCTTCTCCTCCACACCCACCAACTACCCTTCTTCGCTACTCATATC CTCTTACACTAGTAAGTTCTCTATTGCCACTTCACAACACACAAAAAAAAGCAAAATTACAATTTTTACTTGAATTTGTT GTTTAACTATGGTTGCACTGTTGTGTTTCTTCATTTGTTTGCAGAATCCGGAAATGGGTTGGCGAGTGAAGACAAAAAAA TCTTACTTGAGCGGTATGGTTATGATGCTGATGCTGACGAGTACTTTTCTCAATCATCTCCAAAGGTTCAATTTTTCTCT CTTTTTTCTAACTTTCATGCTTGAAAAATGAAAATACTGTGTCATATTGTGTCTCAATGAAAGCTTTGTGAGAATGGTGA ATTTAGCTTTGTGTTTTCTTGTTCTTGGGGGTGTAACTGTTTAGTCTAAGAGGATAAAGGAGCAGCCAAGGACTAGAGGA GGGAAGCAAGTGCAGGACCCACCAGAGGGCCCTAAACCTCATCGTACTACGCATAAACTGCTTCAGGTACTCTCATTTTA GGAATTGGATCCTCTAACAGTGCTAATTGATAAGGAAATTAAGGAGGTTTGTTTTTGTATGTTTATAGACATTTTGCTTG GAGGTTGCTTGTACTTCATTAAAAAATGTATAGTGGAATTGATACATTCCATTTGAAGTGTGCCCCACAGTTTAGAGTAG CTTATCAGCCTTTTTCTGCAGCCTTTGCCTTCCAATGTCATTTAGGATGGATACACTTTACGTGTATGACGAATTGCCAA CATTCTTAAAACTTTTAAGATGATAGTGATAAGCTTCCTTGCGCAGCATTGGGGGTTCTCAAATAGTTAGAACTTCAAAG CAGTGTTTAAATTTCGGATGTTTGACATATAGTAGTAACATCTTTGAGTATTAATTAACTAGTAAAAGTATTTGATCATT TATTAGATGGAGATGACAGTGATAACAGTGAATCTGATGAATTGATATTAGCCGGATGTGCTCTTGGACGGTTTTCTACT TCCTTGAGAAACTTATAAGTTATAACCTTTGTCTATACTGATAGGAGAGGATAAAGTAGAGAGGCTGCAAAAGAGTGGAA CTTGATGAAATGCATTACGTTTCATTTCATCCAATATCTTTTTTTTTTATTCCCCCAATCCGGGAGATATGAAATGGAAC TGCTCTATATGATGGTTAGCATTCCATCCACTTTCCACATAATGGAATGGAAATTTTACTACGTTCCATCATAAATATCC AAACAATGACACATAATTTTATTCTTCATTTCCATACCACTCCATCCCATCTTATTCCATCTAGGGCCGTTTATCTCTTT CTTTTTGTTTATTTTTAAGGCTCTCACATCTATTTAGGTTGTAAATCAATCTTTTGAGCTTGTTATCAACTTGTCAAGCT TTATCTATTGAACTTCTTACAGTTCTATTTCACCCTGAATATTATGCTTAAATGGTTAATTTATACTCTGAATATTATCC AAGTGGCGAGGAACTCGGTTCCTCTTGAATAAGATATCCGATTTGAGTCCTGTGTATAGAGAAAAAGATGCTGGAGAGCT TTACCCCTTTCGACTCGGCTCGAGTCAGATTCCAATGTGACTTCCGGATACTGAGGCTTCGTTTGGATTGATGGAGGAGG AGGGAGTGGAGTGGAAGGGAAGGGAAGGAGGGATGGGTCCATTGTTTGGTTTATTTAAAATAGGATGGAAGGGAGTGGTA AGTAATGGTCCAACATCCATCATGCTCCATTATATTCCATCAGATTTACTCCCTCCCAAATTGGATGGAAAGGAATGGAA AGGAAAATTGGTCACTTAATTAAATTATGAAAATACCATTCTACCCATGATAACCTCCATACATAATCACTACAACTAGA TTTTTTCTTATATATTGTGAGGACAGGGAGATATATATACATTTATTTACACTCTGCAAGTATAGTTGCTCTTCAAATGT TTGCAACTGTACGGTTGCTGGTGATATTGGCCTCTTAATTACGTGGTTCTTGTGGCTGCTTAGTGTGCATCTCTCTTTTC AATGGCTGGTGGTGTACGTTGTGGCATTGTGACTTCTTCTCTTTGTCCAAGTGGTGGTGCCTTTGGTGACTGTTGCTGCA TTTTTGTCCTTGTCTGTACGTTGCTGGTGATATTGGCCTCTTAATAGGAGCATTCATGTTCAATATTTAGACACACCAGA TCTTAAGATATTGAACATTGGCTACCAATTTTTAACTGTTTTTTCAGCTTGTCTTTTATTTTAAAATGAGGGTAATATAG GAATAATAAAAATTATAACTCGTTCCGCTCTGTCCATTATCCAAACAACGCAGTGGTAACTTTGTTCCGCTCCGTCATAA AATATCCAAACAATGGAATGAAATTTTTATTCCATTCCGCTCCGCTCCATTCCGTTCCATTATATTCCATTCCGCTCCGC TCCGCTCCATTATGTTCCATCAATCCAAACGAAGCCTGAGGGTCTAGAACAAAACAGGGAAAAAAAAACTTTAAATAGTT TGATATTTCATTGTTGTCTTCCTTTTCTGAATTCTGATGTTAACGCCTTTCCTCAGTTAGTCATATGCTTTTTAATACCT CTTGCACATTGTAACCTTCCAATGATATAGGTTCTTGGGGGAACAGCTCGAAGAAAGAAGCTACTCTCACCTAAGGGCAT GGATGTACGCCCCATGATGGAAGTTGTAAAAGGTGCAACGTTTGATATATTACAGGTACCAGTTGCATTTTTTATCTCGT AGTACAGTTGTTTGCTCATTAAGTAATAAGTATTGTTCATAGTAATAACTTTATTTTGTAATGCCAAAGGCGGCTGGTGG CTCTCCTGCATCCTTGAGACCTGGACGCTGGTTAGACTTATATAGTGGTACAGGTTCTGTTGGAATTGAAGCACTTAGCC GAGGATGTTGTGAGGTATTAATGTTTTCAATAAGCAGTTTGCAGTAACTCTATCATATGGACTGTGACCACATGTTGCAG TAACCCATTTGTAAAATATTGTGATCACATGTTGAATACCTAAGATATCTCCTCACTACTAAGTGATTGAATCAGCCTTC TATTAAGAAGTGGAATTAACAGATTTTTCATCAAGTTCAATGAGATGCACAAAAGGAATTTCAACAATTTGTTTTAAAAT TTCCCGTTGATGCAACTTTTACTTGAATTCTTTTGTTTTTATGATTTAAAATATTTCAGGTGCATTTTGTCGAGATGGAT CCTTGGGTTGTATCAGATGTTTTACGTCCTAACTTGGAGGGGACTGGATTCCTTGATGCTTCAGTCATACATACTGTCAC TGTGGAAAAATTCTTTGAACGTGGAAAGCAATTTGTAGGCATGTACATTTTATCCCTTGTAATTCAGTTTTATGTATATC CACAAAGCATCTTCGTCAACTGGTACTAGGATTATGGAAAATTACAGGGTTACAAAATGATTTATAACTTCACCCTTCCC CTAAAAAATAATAACATATTATAGTCTGACATATGAGATATTTGATGCAAAAGTATTGCTGGCTGAGGAATTACCAGAAA TTATTCTGGAAGCATTGTTTTTCTATGCAGTTATTTGCTAAGCATCTCAATGAAGGGAATTCAATGAATATTTCCATTGT TAGTAAGGGAGTGACTGCTTCTGTAAATTTGTCTTGTTTACATGCAGGAAACTATGGCCCATTTGATTACATTAGTGTCA CCCCTCCATATACGCAAGTTGACTATGGGGTGCTGATGAGGCAAATCTCAGAATCATCCTTGGTTGGAGAAGACGCTTTT ATTGTATGTAGTAGTTTCTTCCTTATTCTTGGTCTAAATGGTCTTCTGCTTACTAAGTTTATATTGAACTATCTTGTTCT GATATAGGTAGTTGAGTATCCTTCAAAAACTGATATGCTGGATTCTTGTGGACATCTTGTGAAGGTAACTCAAATAACCA ACAGTACTGTGTTTGCATATCATCAACATGTGAAAATGTTTGGTATTCTTATTTTATCACATATAATCTAATTTCCAATC ATTAGTTTTACTTGAAATTCTTTTGACCCTCCTTTCATGATTTTATTATGGATGTGAATTATAATGATATGCCCAAAACT TGAGCTGTGAAGCGGTTGTATGGAACTGCAGATAACTGATAGAAGGTTCGGCCGGACGCTCTTGGCAATTTATGGACCAA CATGGGCCCAAAAGAAGAGGAGATCACACTTTCAAGTAACACAGTTGCAGTAAAGGCTGATGAACTTGCTGGTGGAATTT TTAATCTGTTATAGGGTTCAACAGGAATTAGTTTTGCACCTACTCACTTCTTCAAAAGGTGTCACAGGCAGTCCAATATT GGTCCCTGCCACATGTTATGTCATATGTGATGAATTATAAAAGCTTGAATTCTTTTCTACATGTAATGTGGAATTCCTCA GCTGAAAAATGATTTAGTACTTGTAGATTGAGGTCTCATTGCTAAACTTTTGCTTTAGTGATGAAACAAAGTCCACAAAA AGGTTTAAATTCGATCAGTTAACAGCTTTGCGTCCATCGAATTTTGCCTAAGTGTAGGAATAGGTGAATTATGTCACTAG TTGAAACTATGTTGAATCTCTGACGATTCATCTCAAGAAAGAATCATTGCCTATCATGTTGCTAAAGTAAACTCTGTCCA TAATGTAAAAGCATCCTCAAAGAACTTCAAATGCCAAATTACGCTTGGTATTTGTGGCTTGTGTGCCTAATAACATGCTC GGTTCTGTGATAGGAAATTCTATAATCGCTTATAAGAAGAAGTTACGTAATGTAGTTTCTGTAGTCATTGTGTTTTAGAT TGTGTCCACTGTAATTCCAAACAGGCTATTTCTTAGTTAGCACATAACCCCAAATGGACATATGTGTGAGAGAATCAAAA TGTGAAGATTAAATCATGTAAAATTTTAGTATGATAGAATCTGTTTCCATAAAGGTGCTTTAAATTTTACTTTAATGAGA TGTTGTAAATTTTTTTTAGCAAACTTCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGTTTTGTCCCCTCCAACACCATCACCACTCCTTCTAAACACCAAAGCAAATTTCGGGTCACCATCATCACCTTC ACCTCTTCCTCTTATCACCTTCTCCTCCACACCCACCAACTACCCTTCTTCGCTACTCATATCCTCTTACACTAAATCCG GAAATGGGTTGGCGAGTGAAGACAAAAAAATCTTACTTGAGCGGTATGGTTATGATGCTGATGCTGACGAGTACTTTTCT CAATCATCTCCAAAGTCTAAGAGGATAAAGGAGCAGCCAAGGACTAGAGGAGGGAAGCAAGTGCAGGACCCACCAGAGGG CCCTAAACCTCATCGTACTACGCATAAACTGCTTCAGGTTCTTGGGGGAACAGCTCGAAGAAAGAAGCTACTCTCACCTA AGGGCATGGATGTACGCCCCATGATGGAAGTTGTAAAAGGTGCAACGTTTGATATATTACAGGCGGCTGGTGGCTCTCCT GCATCCTTGAGACCTGGACGCTGGTTAGACTTATATAGTGGTACAGGTTCTGTTGGAATTGAAGCACTTAGCCGAGGATG TTGTGAGGTGCATTTTGTCGAGATGGATCCTTGGGTTGTATCAGATGTTTTACGTCCTAACTTGGAGGGGACTGGATTCC TTGATGCTTCAGTCATACATACTGTCACTGTGGAAAAATTCTTTGAACGTGGAAAGCAATTTGTAGGAAACTATGGCCCA TTTGATTACATTAGTGTCACCCCTCCATATACGCAAGTTGACTATGGGGTGCTGATGAGGCAAATCTCAGAATCATCCTT GGTTGGAGAAGACGCTTTTATTGTAGTTGAGTATCCTTCAAAAACTGATATGCTGGATTCTTGTGGACATCTTGTGAAGA TAACTGATAGAAGGTTCGGCCGGACGCTCTTGGCAATTTATGGACCAACATGGGCCCAAAAGAAGAGGAGATCACACTTT CAAGTAACACAGTTGCAGTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0253700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVLSPPTPSPLLLNTKANFGSPSSPSPLPLITFSSTPTNYPSSLLISSYTKSGNGLASEDKKILLERYGYDADADEYFS QSSPKSKRIKEQPRTRGGKQVQDPPEGPKPHRTTHKLLQVLGGTARRKKLLSPKGMDVRPMMEVVKGATFDILQAAGGSP ASLRPGRWLDLYSGTGSVGIEALSRGCCEVHFVEMDPWVVSDVLRPNLEGTGFLDASVIHTVTVEKFFERGKQFVGNYGP FDYISVTPPYTQVDYGVLMRQISESSLVGEDAFIVVEYPSKTDMLDSCGHLVKITDRRFGRTLLAIYGPTWAQKKRRSHF QVTQLQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 - –
MobiDBLite
mobidb-lite
9 31 23 - –
PANTHER
PTHR43542:SF1
33 318 286 5.8E-121 –
PANTHER
PTHR43542
33 318 286 5.8E-121 –
MobiDBLite
mobidb-lite
77 113 37 - –
MobiDBLite
mobidb-lite
81 97 17 - –
Gene3D
G3DSA:3.40.50.150
108 316 209 3.1E-43 –
Pfam
PF03602
118 307 190 1.6E-45 –
SUPERFAMILY
SSF53335
118 307 190 5.84E-30
IPR029063
CDD
cd02440
167 250 84 0.00347127 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0253700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…