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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260300 |
| Transcript ID | LotjaGi2g1v0260300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT3G01150.1 polypyrimidine tract-binding protein 1; Swiss-Prot: sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1; TrEMBL-Plants: tr|I3RZX9|I3RZX9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0260300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72827522..72833418) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCCATGTAAAAAAAAGGTTATTTTATATATTAAATTAAAATTTAAGATTAAGATTAAACAAAACGTTTAACGAATCA CTCTCAAACTCGTTTTCTCGGAATCGAGCAGCACATTTTCTCGGCACCCAAACACCCTTCCGAATCCCCATTCTCCGCTC GCCGCGCCGGAGCCCCCAATCGAAATCGTGACCAACCGATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACA CCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGAGTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGG CCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATAAGAATCAAGCTTTTGTTGAATTCGTAAGCTCCTACTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTAATATCGTTTTTCAATTGTGAGTTTGTTTTTCTGATTTTTGGATTAGA ATTGTGATTGTTAGGGTTTTAACTGTTTGAAAATTTGAGAGAGATTGAGTTCAATAGGAATATGGTTCTAACTGTTCAGC AATATTGAATATCAGAATTGGCTTGATTAACACTGTTGATGTGACTGAGGTGTTTAGCACTTTAGCTTAATAAAATGTTG TGTTATGTGTGCAAATTGTTGGTCTGATCACTATTTTCATTCAGTAATTGGAGACCAAGCTGGATAAGAGAACTGTGTTT TTTCAATTAGAGAAATTGAGGGATTTGGTTACTGCTGAAAGTTATTGGGGAACTCTTGTAGTACGAGAAGTGTAATAAAG CTAATAAATTATAATATTATCTCATAAAAATCAGACAGTATTTTTTTGGTTGCGCCGAGGTATCCCCACAGTCGGCAGCC ATGAGACTAATACTCTCGATGCTCTGAGTTCGCATTAAGTGGGTAGGCCTCGGATGTCAAAAAAAAAAGTGGGCAGGCCT CTCCCAATAAATCATTCTCCCTACGCACCGCCCATGAATTGACATTGGACTAGATGCTTAAGGAACCCAACTATCTACTA GTTGTGTTAGACCTTGTTTGGTTATCAGACAAAACATGGGTTGTCCTTTTTAAAAAAAATAATTAATCATTGTAGGTAAA CACTAGGAGTTCCTGTTTATCAAACTCTATTTCACTTGAATCGACTCAAATTTAAAACAAAAAAAGAAGTACAAGCTAGG AATTATCCATGGTGTTTCAGGAGTGACTACTATTGCATCTGGGTGCTGATACATATTTGAAACGAGTGTGTTTGGCATTT TGAAGTGTTTTTGCTTCCTAGGTCTTTATGAAAGAGACTGAACTGGAGACTAGATTACAAAGATGAATATTTATGGATAA TTTTTTTCAGTAATTTTTCTGAATAAATGAAGTTAAATGGACGGATGGGAATTTTAGAAGTCTGATGACTCTTAATGCAA GTGAAGTTCAGTTGGAAATATGTAGACCATAAACTACTTGTTTCTGCAACTGGTCTTCGAACTGGCTTTCCCATAGGTTA TTTCAGTTTTTTTTCCCTAGTTAGAAGTTAGAACTTTATGTGGATGACAACTGACTAGTGTATATACTGAATCACAACAA TAATGGTAAACGAGTAAATGACTCTCAAGATATGAACTATAGTACTGGGCTGCATTACATGCTTTCTTATATTTGATGAC ACACTTTGATCTGGTTCTTTATTGGTTTTCCTTCTCAAGTTTCTAAGCTCTTAAGTATATATGCTTTACCAGGGGGATCT AAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCTGCTCAGGTTCGAGGCAAAACTGTTTACATTC AATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGTCCCTGGAAATGTCTTGCTAGTAACCATGGAA GGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTAAGTGCTACTGAGTTGACTAGTTGATTAGGATCTGT ATGTGAGGTTGCATGCTCCTTGTTTGTGTAAAATGTGCATTGTACTACTTTCTTTGTAATGCATATTTGCTAATTTGATT TGGTACATGTCTTTATGCTTTATTCAGGTGTTTTCTGCATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGC AGGTTTCCAGGTTAGTGAAACAGTAAATTAAATTGCACTTCTTTCAATGTATCATTCTCAGTATTCACTGTGTGTTATTT TGTGGAAGGCTTTGATTCAGTTCACTGATGCTGAGACTGCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCC AGGCAAACTTTGCTTTTACATTTCCTCTTTTCTTTTTCACCCTCATCATTAATACTAATGATTTCTTTTATGTACAGTTA CTTGCTCCCACAGCATGTTGGTTCTTGTAACTTGCGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAAT CTAATCGCAGCAGGTAGTAATGGGGATTCGAGACAGCTATTCTCTGTTGTGTTTAAACTTAAATGCCCTTGCATGTAATT TTTCATGGTGTCCTCTAATGTGCTGAAAACTGAAAGATATATAGGTTTTGTCATCTAATAGTTATATAAAGTTGGCAGTC AGAATGCAGATGTGTTGTAATGACCTCTTACTAGTTTTCTTTCTTTTTCCAGATGTTAGATAAATTTGTTATCATTAGAC TTTAATTATGAAAAATATTATTCTCTTGTTATGGAAACCAATTGTATAAAGCTACCTTTTCTGCATGTGGGTAATTTGTT TAATCATATTAGAGAGTTAATATTAACTGTGTTTTGTTCTTAAATCTCAATTTAATTTGTTCTCCTTGATCTTTATCTAT GATGATAATTCTGATTTCAAAACGTACAAACTGCCTTTTATAAGTGCAATCTCTATATATCAATTTGTAGTTGTTGTCAC AGGCGCACATCATCTAGATTTCTTAATTGAATCGTCAATCAGACACAAATTTTTTTCTATGGTTGATTATGCCAAGATCC CCACTGGCCATTATCAAGTGATATTTTCTTTTTGATAATATCTTCTTTTATAAAAACTATCAGACAATACTTTTTTTCCC CTTTTATGGAGATTCCAAGTTTAAAACCTATTTTCAAAAAACTAGATATATTCTAGTTGGCAGGAAAAGGAAATAGAAGT GGAACATCTATAGTTACATGATATTTAAATTCATATGGTTGATTTTGTACAATATCCTTACTGCATTTATTTTTGAAATC ATTTGTTGATATTAGTCCTATGACAATCCTTGGTTTGGTTATATTCATTTACTCTTATGACTTTGTAGGGACTACACAAA TCCAATGCTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGGTACTTTTGTTCATTTTTTCTTCAATAATGTATT TTTTTCAAGATTTTAGTATGTTCTTACAATTTATAATTTTCAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCTG AGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGTGGAAGTTCTTCACACGGTGAGAACTTGT ATTTCTCATTAAAATTTCAAATTTATAGATGATTATACTCAATGCTGCTTATTTGTTACAGGTGTTTTCTGCATTTGGCA CTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGATTCAATACCCTGGTATTAATCCTATTTGA CTGATGCTCTTGAGTCTGTAGTCTTTATTTTTACTATGAACTTCGAAAGTATATACTATATATACACATCTTTATATTCC TTTTTTGCCACACATTTATACAATGTGATGATAATTTTCCTTCTGCTTCACTGTGGAATGTGGGTGATGGTTCTCACTCA TGAATGGAAAATAGTCATGATACTATTTTTCTGTATGATTATGTGTTTTCATCTGTGAGGGGAACTCTACTCATGGTGTT TAACAGAAACTACTCTGATAGAATGGGCAGCTTTGTTGTATTTTTTTAGCTTCTTTGGCGTGCTATATTCTGTCTTTTAT TCTATATTAAGCTGATAAATCCTAGATGATAAATTACCACCTAATGGTATTTCTTCTCATCAGTTTTTCTTTTGCTCCAG ACCATGGTTTATGATCATATGTAGATTAGATTAGGATAACGTGGCATATTCAAATAAAACCAAACATGAAAACAACAGCT GTCTGAGCATGATAGGCTCCACTCAAACTCGACTAATTATGTCAAATATTTATTACTCTATATGATATAATTTAAAATTT TACTAATAATTTTTAATGATATGATTTATTGATTGAAAATTACTCAAAACAATCTTGAGCTTGATGTTGATAAAATAAAG TTTAAGCTGAGTTCAGGCTTAACTTGGCTTTATTTCACCCCTAGAATATGATTAACACTAATTCTAGTAGTTTCTCAAAG TCCCGTCATTACCATTCTAGGCTTTTTGTTTTGTATAGTTAATTATGATATAGTTAATCTAAAACCATTACTCTTAACCC CTGAACTTTTTAACCGTAATATATCATGGAATAGATCTTCCTTTATTCTATAGTCCATTGAAATTCTTAATTTGTTTATG TATAGTAATTGTGCATCCTTTACTTGACAAATCATTTCCTTTTGTGGCCCGTCCTTTCAGATGTCACAACAGCAGCAGCT GCCAAAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCTCGTCATACTGA TCTCAATGTAAAGGTATAAAGATATGTGTTTTAGTTAGTGTTCATGAGGGGAAAGTATTGGGGAGAGGGGTTTAAAGATA TTCTTAGAAGCAATGTGGACAATTTCTTGATCACAAATGGGTCTTGAGTGTATGCTCCTCGAAACTTGATTGACCTTTTA CAGTATTTTCTTTTTAATCTGTGAATGACTATCGCAGAATCTGATTTTAAGTATTAAATATAATTGTTTTTGGTTTTAGG CTTACAGTGACAAAAGCAGAGACTATACAGTGTTGGATCCTAGTCTCCGTGCAGCACAAGTTCCTGCAACAGCATGGCCG AATCCTCAGGCTGCTCCTATGTACCCTGGTAGTGCCCCTGCATTACAGGGTCAAGTATCCGGTGGACAAATGTCATCATG GGATCCGGCCCATCAGGAAGTTAGCCAAAGTTATATACCCGCACCTGGTACTTTTCCCGGTTATTCCCCAGCAGCAACAT CAAGCAACCATTTAGTTCATAATGCAAGTTCTATGGGAATCACTCAGAATGTACATTCACAGCCCAGTGTTGCTTCACCT CCAGGTCCTGGTTCCTCACCTCATACACAACCCAGTTCATTTGCTGGTCTTCAACATTATCATGGTTAGTAATATTTCAA CTGAATGAAAGAGATTCCCCTCTGCCCCCTACGTTTTTTTTGTTGGATCATAAGAGGTCTACCGAATTACAGTTTCAATT TCAAATGTCTCAAGTGCAATGCCTCTCCTCATATTGGTCGCTCTTTCGATGTATTATTCTTACTTCTTGCATGGCTTTGT TTACACATTCATTGTTTTTGTTTATACCAACCCTTGCGGGCACGAGGTGCACAGCGGTGAATTCTTTCCATTTTTTCTGA TTTGGATGCCTGTATTTTTCTTTGTTGTTTCCTCCTTTAATGGGTGTCAAGTTGGTACCCAGCTAATGGGGATTTGTGCT TTGCTGTGTAGGTCCTTTCCTTGGTGTATGGCAACAAAATACATACACCCCCCCCCCCCCCCTCTTCAATTATGTAAACC GCCACATTTTTGTGCCTTTTTTTTCTGCTATAGCGTGCATAAGTTAAAGTTCAAGAA
CDS sequence (LotjaGi2g1v0260300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGA GTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATA AGAATCAAGCTTTTGTTGAATTCGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCT GCTCAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGT CCCTGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTGTTTT CTGCATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGCTTTGATTCAGTTCACTGATGCT GAGACTGCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCCAGTTACTTGCTCCCACAGCATGTTGGTTCTTG TAACTTGCGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGGACTACACAAATC CAATGCTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCT GAGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGTGGAAGTTCTTCACACGGTGTTTTCTGC ATTTGGCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGATTCAATACCCTGATGTCACAA CAGCAGCAGCTGCCAAAGAAGCTTTAGAGGGGCATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATACTCT CGTCATACTGATCTCAATGTAAAGGCTTACAGTGACAAAAGCAGAGACTATACAGTGTTGGATCCTAGTCTCCGTGCAGC ACAAGTTCCTGCAACAGCATGGCCGAATCCTCAGGCTGCTCCTATGTACCCTGGTAGTGCCCCTGCATTACAGGGTCAAG TATCCGGTGGACAAATGTCATCATGGGATCCGGCCCATCAGGAAGTTAGCCAAAGTTATATACCCGCACCTGGTACTTTT CCCGGTTATTCCCCAGCAGCAACATCAAGCAACCATTTAGTTCATAATGCAAGTTCTATGGGAATCACTCAGAATGTACA TTCACAGCCCAGTGTTGCTTCACCTCCAGGTCCTGGTTCCTCACCTCATACACAACCCAGTTCATTTGCTGGTCTTCAAC ATTATCATGGTTAG
Protein sequence (LotjaGi2g1v0260300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASTAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGDLNQAISMVSYYASSSEP AQVRGKTVYIQYSNRHEIVNNKAPGDVPGNVLLVTMEGVEAGDVTIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDA ETASLARNALDGRSIPSYLLPQHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDGALQPVVGPDGKRTES ESNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDVTTAAAAKEALEGHCIYDGGYCKLHLTYS RHTDLNVKAYSDKSRDYTVLDPSLRAAQVPATAWPNPQAAPMYPGSAPALQGQVSGGQMSSWDPAHQEVSQSYIPAPGTF PGYSPAATSSNHLVHNASSMGITQNVHSQPSVASPPGPGSSPHTQPSSFAGLQHYHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 105 | 104 | 1.1E-24 | ||
| PANTHER | 4 | 427 | 424 | 5.8E-210 | – | |
| PANTHER | 4 | 427 | 424 | 5.8E-210 | – | |
| SUPERFAMILY | 6 | 102 | 97 | 1.88E-18 | ||
| CDD | 15 | 95 | 81 | 1.18876E-52 | ||
| ProSiteProfiles | 17 | 95 | 79 | 11.452 | ||
| SMART | 18 | 91 | 74 | 4.4E-8 | ||
| Pfam | 22 | 70 | 49 | 2.5E-7 | ||
| Pfam | 107 | 175 | 69 | 9.2E-4 | – | |
| Gene3D | 109 | 221 | 113 | 7.3E-26 | ||
| CDD | 109 | 203 | 95 | 2.01624E-56 | ||
| SUPERFAMILY | 123 | 212 | 90 | 2.52E-9 | ||
| Gene3D | 241 | 343 | 103 | 1.2E-30 | ||
| Pfam | 241 | 320 | 80 | 4.6E-9 | ||
| ProSiteProfiles | 242 | 322 | 81 | 8.706 | ||
| CDD | 242 | 338 | 97 | 5.64284E-63 | ||
| SMART | 246 | 316 | 71 | 0.041 | ||
| SUPERFAMILY | 246 | 339 | 94 | 1.48E-15 | ||
| MobiDBLite | 360 | 386 | 27 | - | – | |
| MobiDBLite | 371 | 386 | 16 | - | – | |
| MobiDBLite | 424 | 457 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0260300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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