Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0260300 |
| Transcript ID | LotjaGi2g1v0260300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT3G01150.3 polypyrimidine tract-binding protein 1; Swiss-Prot: sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1; TrEMBL-Plants: tr|I3RZX9|I3RZX9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0260300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72829496..72833220) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGA GTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATA AGAATCAAGCTTTTGTTGAATTCGTAAGCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTAATATC GTTTTTCAATTGTGAGTTTGTTTTTCTGATTTTTGGATTAGAATTGTGATTGTTAGGGTTTTAACTGTTTGAAAATTTGA GAGAGATTGAGTTCAATAGGAATATGGTTCTAACTGTTCAGCAATATTGAATATCAGAATTGGCTTGATTAACACTGTTG ATGTGACTGAGGTGTTTAGCACTTTAGCTTAATAAAATGTTGTGTTATGTGTGCAAATTGTTGGTCTGATCACTATTTTC ATTCAGTAATTGGAGACCAAGCTGGATAAGAGAACTGTGTTTTTTCAATTAGAGAAATTGAGGGATTTGGTTACTGCTGA AAGTTATTGGGGAACTCTTGTAGTACGAGAAGTGTAATAAAGCTAATAAATTATAATATTATCTCATAAAAATCAGACAG TATTTTTTTGGTTGCGCCGAGGTATCCCCACAGTCGGCAGCCATGAGACTAATACTCTCGATGCTCTGAGTTCGCATTAA GTGGGTAGGCCTCGGATGTCAAAAAAAAAAGTGGGCAGGCCTCTCCCAATAAATCATTCTCCCTACGCACCGCCCATGAA TTGACATTGGACTAGATGCTTAAGGAACCCAACTATCTACTAGTTGTGTTAGACCTTGTTTGGTTATCAGACAAAACATG GGTTGTCCTTTTTAAAAAAAATAATTAATCATTGTAGGTAAACACTAGGAGTTCCTGTTTATCAAACTCTATTTCACTTG AATCGACTCAAATTTAAAACAAAAAAAGAAGTACAAGCTAGGAATTATCCATGGTGTTTCAGGAGTGACTACTATTGCAT CTGGGTGCTGATACATATTTGAAACGAGTGTGTTTGGCATTTTGAAGTGTTTTTGCTTCCTAGGTCTTTATGAAAGAGAC TGAACTGGAGACTAGATTACAAAGATGAATATTTATGGATAATTTTTTTCAGTAATTTTTCTGAATAAATGAAGTTAAAT GGACGGATGGGAATTTTAGAAGTCTGATGACTCTTAATGCAAGTGAAGTTCAGTTGGAAATATGTAGACCATAAACTACT TGTTTCTGCAACTGGTCTTCGAACTGGCTTTCCCATAGGTTATTTCAGTTTTTTTTCCCTAGTTAGAAGTTAGAACTTTA TGTGGATGACAACTGACTAGTGTATATACTGAATCACAACAATAATGGTAAACGAGTAAATGACTCTCAAGATATGAACT ATAGTACTGGGCTGCATTACATGCTTTCTTATATTTGATGACACACTTTGATCTGGTTCTTTATTGGTTTTCCTTCTCAA GTTTCTAAGCTCTTAAGTATATATGCTTTACCAGGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCAT CTTCAGAGCCTGCTCAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCC CCTGGAGATGTCCCTGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCA CTTGGTAAGTGCTACTGAGTTGACTAGTTGATTAGGATCTGTATGTGAGGTTGCATGCTCCTTGTTTGTGTAAAATGTGC ATTGTACTACTTTCTTTGTAATGCATATTTGCTAATTTGATTTGGTACATGTCTTTATGCTTTATTCAGGTGTTTTCTGC ATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGTTAGTGAAACAGTAAATTAAATTGCAC TTCTTTCAATGTATCATTCTCAGTATTCACTGTGTGTTATTTTGTGGAAGGCTTTGATTCAGTTCACTGATGCTGAGACT GCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCCAGGCAAACTTTGCTTTTACATTTCCTCTTTTCTTTTTC ACCCTCATCATTAATACTAATGATTTCTTTTATGTACAGTTACTTGCTCCCACAGCATGTTGGTTCTTGTAACTTGCGTA TTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGTAGTAATGGGGATTCGAGACAGCT ATTCTCTGTTGTGTTTAAACTTAAATGCCCTTGCATGTAATTTTTCATGGTGTCCTCTAATGTGCTGAAAACTGAAAGAT ATATAGGTTTTGTCATCTAATAGTTATATAAAGTTGGCAGTCAGAATGCAGATGTGTTGTAATGACCTCTTACTAGTTTT CTTTCTTTTTCCAGATGTTAGATAAATTTGTTATCATTAGACTTTAATTATGAAAAATATTATTCTCTTGTTATGGAAAC CAATTGTATAAAGCTACCTTTTCTGCATGTGGGTAATTTGTTTAATCATATTAGAGAGTTAATATTAACTGTGTTTTGTT CTTAAATCTCAATTTAATTTGTTCTCCTTGATCTTTATCTATGATGATAATTCTGATTTCAAAACGTACAAACTGCCTTT TATAAGTGCAATCTCTATATATCAATTTGTAGTTGTTGTCACAGGCGCACATCATCTAGATTTCTTAATTGAATCGTCAA TCAGACACAAATTTTTTTCTATGGTTGATTATGCCAAGATCCCCACTGGCCATTATCAAGTGATATTTTCTTTTTGATAA TATCTTCTTTTATAAAAACTATCAGACAATACTTTTTTTCCCCTTTTATGGAGATTCCAAGTTTAAAACCTATTTTCAAA AAACTAGATATATTCTAGTTGGCAGGAAAAGGAAATAGAAGTGGAACATCTATAGTTACATGATATTTAAATTCATATGG TTGATTTTGTACAATATCCTTACTGCATTTATTTTTGAAATCATTTGTTGATATTAGTCCTATGACAATCCTTGGTTTGG TTATATTCATTTACTCTTATGACTTTGTAGGGACTACACAAATCCAATGCTTCCTGTTAATCAGACTGCTATTGACGGGG CATTACAGGTACTTTTGTTCATTTTTTCTTCAATAATGTATTTTTTTCAAGATTTTAGTATGTTCTTACAATTTATAATT TTCAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCTGAGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAG TACGCTGTCACTGTGGAAGTTCTTCACACGGTGAGAACTTGTATTTCTCATTAAAATTTCAAATTTATAGATGATTATAC TCAATGCTGCTTATTTGTTACAGGTGTTTTCTGCATTTGGCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAA ACTCAGGCACTGATTCAATACCCTGGTATTAATCCTATTTGACTGATGCTCTTGAGTCTGTAGTCTTTATTTTTACTATG AACTTCGAAAGTATATACTATATATACACATCTTTATATTCCTTTTTTGCCACACATTTATACAATGTGATGATAATTTT CCTTCTGCTTCACTGTGGAATGTGGGTGATGGTTCTCACTCATGA
CDS sequence (LotjaGi2g1v0260300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCGTCAACAGCGCAACAGTTCCGGTACAATCAAACACCTTCGAAGGTGCTGCACTTCCGCAACCTTCCATGGGA GTGCACGGAAGACGAGCTCGTTCAACTGTGTTGCCCCTTCGGCCAGGTCATGAACACCAAGTGCAATGTTGGCGCCAATA AGAATCAAGCTTTTGTTGAATTCGGGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCATCTTCAGAGCCT GCTCAGGTTCGAGGCAAAACTGTTTACATTCAATATTCCAATAGACATGAAATTGTCAACAATAAAGCCCCTGGAGATGT CCCTGGAAATGTCTTGCTAGTAACCATGGAAGGCGTAGAAGCTGGAGATGTGACAATCGATGTTATCCACTTGGTGTTTT CTGCATTTGGCTTTGTACACAAAATCGCTACATTTGAAAAGACTGCAGGTTTCCAGGCTTTGATTCAGTTCACTGATGCT GAGACTGCTTCTTTGGCTAGGAATGCACTGGATGGAAGAAGCATACCCAGTTACTTGCTCCCACAGCATGTTGGTTCTTG TAACTTGCGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGGACTACACAAATC CAATGCTTCCTGTTAATCAGACTGCTATTGACGGGGCATTACAGCCTGTTGTTGGTCCTGACGGGAAGAGAACCGAATCT GAGAGCAATGTGCTTTTGGCTACAATTGAAAATATGCAGTACGCTGTCACTGTGGAAGTTCTTCACACGGTGTTTTCTGC ATTTGGCACTGTGCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTGATTCAATACCCTGACATTTATA CAATGTGA
Protein sequence (LotjaGi2g1v0260300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSASTAQQFRYNQTPSKVLHFRNLPWECTEDELVQLCCPFGQVMNTKCNVGANKNQAFVEFGDLNQAISMVSYYASSSEP AQVRGKTVYIQYSNRHEIVNNKAPGDVPGNVLLVTMEGVEAGDVTIDVIHLVFSAFGFVHKIATFEKTAGFQALIQFTDA ETASLARNALDGRSIPSYLLPQHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNQTAIDGALQPVVGPDGKRTES ESNVLLATIENMQYAVTVEVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDIYTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 294 | 294 | 2.8E-177 | – | |
| PANTHER | 1 | 294 | 294 | 2.8E-177 | – | |
| Gene3D | 2 | 105 | 104 | 4.8E-25 | ||
| SUPERFAMILY | 6 | 102 | 97 | 8.46E-19 | ||
| CDD | 15 | 95 | 81 | 3.74731E-54 | ||
| ProSiteProfiles | 17 | 95 | 79 | 11.452 | ||
| SMART | 18 | 91 | 74 | 4.4E-8 | ||
| Pfam | 22 | 70 | 49 | 1.3E-7 | ||
| Pfam | 106 | 175 | 70 | 3.8E-4 | – | |
| CDD | 109 | 203 | 95 | 2.05389E-58 | ||
| Gene3D | 109 | 221 | 113 | 3.1E-26 | ||
| SUPERFAMILY | 123 | 212 | 90 | 1.07E-9 | ||
| Pfam | 232 | 293 | 62 | 0.077 | – | |
| Gene3D | 239 | 294 | 56 | 3.3E-14 | ||
| SUPERFAMILY | 245 | 292 | 48 | 7.13E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0260300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…