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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0263600 |
Transcript ID | LotjaGi2g1v0263600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Lysine--trna ligase; TAIR: AT3G01060.1 lysine-tRNA ligase; Swiss-Prot: sp|Q2TZ19|CFT1_ASPOR Protein cft1; TrEMBL-Plants: tr|A0A0L9VPA5|A0A0L9VPA5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73298957..73302373) extracted from Lotus japonicus Gifu genome v1.2.
CCACGTGTCCAAAGCACAGCCAAGAATGTTTCTGTTTTGGACATTGCATCCATGCACCCACCACAAAACCAGAGCATTTG GTTTTCGGTGACAAACTGAGTTCTCAAAACATGGTGGCAGCCATTGCTGTTTCTTCTCCTAAGTCCACACTTTTGCAGAA CACCATCTATTTGAGCGACCCAAGTTCAAATTTTGTTGGTGGGTCTTTGAAGGGTCTCTCCTTGCAGCTGAAACCAAGAC AACAAAGAAGACACTTCACTGATTTGGTTGTGGCTTCAGCCAGCAGCACCGCTTCTCCAACCAGCAGCAATGCCAGTGGC AGATTCTACTTCAACTTCACTGGGTTTCCTTTCCCTCTAGGTCCTTTCCTCAACAGGCGCACTATTAGAACTGAGGTTTT TTACATTGCTCTTGCTTTATTTTATATATGTTTCTGTTGCTTATTTTAATCAGTGATAACATGTTTGTTCCACAGGTTAA ATTCTCTATAATTACTTCTGGTTACAAGTTATAATAGCATGTTTCTATCAGTACAGGAATGATTATCAATTTGGAAGAAT TTCCAAACATGTACTAAGTCTTAGCTCAGGAGTAAAAGTGGCTTGAATTATTTACAAAATGTGAAACCAAACATCCACTT AATTGATTTAGTTGGGGTTTGTATTCATTGAATTGCTTTTACATAACCATAACATGGTGCTTATGTGATATTTATGTGTT CCTTTTCCTCCAACCTGTTCATTTTTTCTGAATTCTCTTGGAAGTCCTTAATGTTAGATAGAACGCAATGCATTTTTTTT TATTGAATGAAGAAATTTCTGATTTTTTTGCCTTTCATTATTGTGTTTGTGATACTTGATATGCAGATCATTGTGGCCTC TACTTTAACTGGATTATGAGTGCCTTGTTGAAGTAAATTTTTGTTTTGTTTTGCTTTTGCATACTGCTTATAATGTGTAA TGGCATGTAGGTATTTCATAGTATATGGAAATCCTATTATAATGCTGGGAACAATTCACTATAGATTTTATGTAGAATTT TTCACTTTCTGATTCTGAGGCTCTTATATCTCCTTTTGTTTTGAATCATGTTGTATGTAGGCTGTGAAGGGCTGTATATG GCTATTCGAACAAGAGCAAGCATTAGGCTTCAGCAGCGTTTCAACGAACACTAGGATGACAGTTATCAAACTCAAATCTG GTGGTTTATGGGTTCATGCACCTATAGCTCCAACTGACGAGTGTATTCAGGTTCTGCTTTAAATACAATTTTTTCTTAGT TTGTGATAGAAACTGGATATAAACGAACAAGGTTGCTGAGTAATTGGAGAGACTCAGCCACTCTCCCTAAGTTCCAAACC CTAAATGATCCAAAAAGATAACAATGATCACCCTAAACTCTCTATTTACAACATGCCTCACTAACTAACCCTCCCACTAA TTAATCAACTCCCACTAACTGAGCGTGTCTAACAGCTTGGAATAACAAAGTAATGTGACTTAACAAAATACCTTAATTGG ATATAAGCGAGAGGGTTTTGAAAATACCAGGTAGCTTTATCATAATTTTCTAACTCAAAAGAAAGAATTTATAATTCCAC TCTAGTAATGCTGCAAGGAAATTTCTATGAAGGATATTTTTGTGACCATAGGAATATGAATCCGTAATTCCGTATTGATA CGGTGATTTTATGATGCTTTCTTAACATGTAAATTGTTTGTTTATTGCAGCTTATTAAGGAGCTGGGGGCTCCTGTTGAA TGTATAGTCCTACCTACTTTTGCTTATGAGCACAAAATATTTGTTGGTCCATTTTCTAGAAAGTTTCCCCTTGCTCAGGT GTGGGTGGCACCAAGGCAATGGAGTTGGCCATTGAATTTACCTTTGGAATTCTTTGGTATTTTTCGCGCTAAAACTTTGA AAGACGAGGATTCGTCCACTCCTTGGGCTGGTGAGATAGAACAAAAGGTTCTGAGCTCACCTGAAGTTGGTAATGATCAT CTGTTGTTTTTGCGTATTTTCAAACATGATCTTCATGAATCAAAAATGTAAAATCTCATTTGTGTGAGAAATGTCTCAGG AATCGGTCCCTATGTGGAAGTAGCTTTCTACCACAAGCCTTCAAGAACACTATTGGTGACCGATGCTGTTATTTTTGTCC CAAGACAGCCACCTGAGTGTATAAGCAAAGAATCCCTGTTAGCATCTGCAAAAAATGGTCTCGCTGTAAAACTTCTAAGT AAAGGAAGGGAGGTACCTGATGACCCAGTTATCGACGACAAAAGGAACCGGCAAAAAGGTTGGCTCTTTTCTTTTTTCTT TTCTTTCTCTCCAACTTGCTTTAAGCAGATTACTTTTCAGTTGAGTTCAAACCAAATTAACCGTGACGGCCATTTTATGC AGGATGGGAAAGAATGGTTCTACAAATCTTGTTTCTTGGTCCATCCAATCTTTTAGAACCTAATGCTAGCTTTGCACAGA TGTCCCAGAAGTTGATTGTTTCACCTATTGTGAAGACGCTGGTCTTCAGCAAAGTTCCTGAAAAGGTAATAAATCTTCTT TGTGCTGTATCATTTGTTTCTTATTAATAAAATTTTAGTCTGCTTTTACCAGATAGAGTTGTTAATTGACAATGTGGTCA CTAGTTAGTGCGTAAATATATTCCAACTAACCATTCATGTGTACTGATCTGAATGTTCCAAAAGTAAGACAACTTCTTTG CAAATTCTTGAAATCAGAAAACAGAGTAAAATAAGTTGATGTTTTTTTTAATTATTAATTAAATCATATTAACTGGAAAT GAAAACAAAAGAGCAAACTCTACCATTCACAGCGCGTAAATCAACTCGTGTGGAGTTGTTATAGCTTAAGTAGAGGTCTC GGGTTCGAGTCCCTGCGAATGCAACTGTGTTAAATACTTGGTAGAGAGAACAAGTATTAGTGGAGGATACCTGTGGATGA AATTTGCACTTGTTTATGTTCTGTGTTCAGTACTCGGGTTGTCTCCCATAGTGGTCCTACTCTGCTTGAACATGATTTGT CTTAGTGGAGGATACCTATGGTTTAAACAAACAAAAAAACTTAACCATTCACATCTTGCTTTGTTATTATCATCCAGGTG AGAGAATGGGTTGATAGCATTTCGCGAGATTGGAGGTTCAAGAGAATTATCCCTGCTCACTTTGCTGCTCCAGTAAATGC AAGTAGGTCTGATTTCCGGGCTGCTTTTGCATTTTTGGATGAGTTTTTGGTCGACCCTAATCCAACTTGGCCTTCTCTTT CCCTTCTGTTCTCATCAATCATGGGAAAGGCAGCCAGTTATTTCCCCCCGGATGACATGAGGACCTTATCATCCCTTGAC CAGTTTTTAGTTTCAGTTGGAGCAGTGAAGAGAACTGTTTCAGGAAGGAAGCGATGA
CDS sequence (LotjaGi2g1v0263600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCAGCCATTGCTGTTTCTTCTCCTAAGTCCACACTTTTGCAGAACACCATCTATTTGAGCGACCCAAGTTCAAA TTTTGTTGGTGGGTCTTTGAAGGGTCTCTCCTTGCAGCTGAAACCAAGACAACAAAGAAGACACTTCACTGATTTGGTTG TGGCTTCAGCCAGCAGCACCGCTTCTCCAACCAGCAGCAATGCCAGTGGCAGATTCTACTTCAACTTCACTGGGTTTCCT TTCCCTCTAGGTCCTTTCCTCAACAGGCGCACTATTAGAACTGAGGCTGTGAAGGGCTGTATATGGCTATTCGAACAAGA GCAAGCATTAGGCTTCAGCAGCGTTTCAACGAACACTAGGATGACAGTTATCAAACTCAAATCTGGTGGTTTATGGGTTC ATGCACCTATAGCTCCAACTGACGAGTGTATTCAGCTTATTAAGGAGCTGGGGGCTCCTGTTGAATGTATAGTCCTACCT ACTTTTGCTTATGAGCACAAAATATTTGTTGGTCCATTTTCTAGAAAGTTTCCCCTTGCTCAGGTGTGGGTGGCACCAAG GCAATGGAGTTGGCCATTGAATTTACCTTTGGAATTCTTTGGTATTTTTCGCGCTAAAACTTTGAAAGACGAGGATTCGT CCACTCCTTGGGCTGGTGAGATAGAACAAAAGGTTCTGAGCTCACCTGAAGTTGGAATCGGTCCCTATGTGGAAGTAGCT TTCTACCACAAGCCTTCAAGAACACTATTGGTGACCGATGCTGTTATTTTTGTCCCAAGACAGCCACCTGAGTGTATAAG CAAAGAATCCCTGTTAGCATCTGCAAAAAATGGTCTCGCTGTAAAACTTCTAAGTAAAGGAAGGGAGGTACCTGATGACC CAGTTATCGACGACAAAAGGAACCGGCAAAAAGGATGGGAAAGAATGGTTCTACAAATCTTGTTTCTTGGTCCATCCAAT CTTTTAGAACCTAATGCTAGCTTTGCACAGATGTCCCAGAAGTTGATTGTTTCACCTATTGTGAAGACGCTGGTCTTCAG CAAAGTTCCTGAAAAGGTGAGAGAATGGGTTGATAGCATTTCGCGAGATTGGAGGTTCAAGAGAATTATCCCTGCTCACT TTGCTGCTCCAGTAAATGCAAGTAGGTCTGATTTCCGGGCTGCTTTTGCATTTTTGGATGAGTTTTTGGTCGACCCTAAT CCAACTTGGCCTTCTCTTTCCCTTCTGTTCTCATCAATCATGGGAAAGGCAGCCAGTTATTTCCCCCCGGATGACATGAG GACCTTATCATCCCTTGACCAGTTTTTAGTTTCAGTTGGAGCAGTGAAGAGAACTGTTTCAGGAAGGAAGCGATGA
Protein sequence (LotjaGi2g1v0263600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAAIAVSSPKSTLLQNTIYLSDPSSNFVGGSLKGLSLQLKPRQQRRHFTDLVVASASSTASPTSSNASGRFYFNFTGFP FPLGPFLNRRTIRTEAVKGCIWLFEQEQALGFSSVSTNTRMTVIKLKSGGLWVHAPIAPTDECIQLIKELGAPVECIVLP TFAYEHKIFVGPFSRKFPLAQVWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDSSTPWAGEIEQKVLSSPEVGIGPYVEVA FYHKPSRTLLVTDAVIFVPRQPPECISKESLLASAKNGLAVKLLSKGREVPDDPVIDDKRNRQKGWERMVLQILFLGPSN LLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVREWVDSISRDWRFKRIIPAHFAAPVNASRSDFRAAFAFLDEFLVDPN PTWPSLSLLFSSIMGKAASYFPPDDMRTLSSLDQFLVSVGAVKRTVSGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 451 | 451 | 3.4E-235 | – | |
PANTHER | 1 | 451 | 451 | 3.4E-235 | ||
Pfam | 98 | 321 | 224 | 1.0E-83 | ||
Pfam | 325 | 391 | 67 | 5.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0263600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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