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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0263600 |
| Transcript ID | LotjaGi2g1v0263600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine--trna ligase; TAIR: AT3G01060.2 lysine-tRNA ligase; Swiss-Prot: sp|Q2TZ19|CFT1_ASPOR Protein cft1; TrEMBL-Plants: tr|A0A0L9VPA5|A0A0L9VPA5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73299064..73302373) extracted from Lotus japonicus Gifu genome v1.2.
AACATGGTGGCAGCCATTGCTGTTTCTTCTCCTAAGTCCACACTTTTGCAGAACACCATCTATTTGAGCGACCCAAGTTC AAATTTTGTTGGTGGGTCTTTGAAGGGTCTCTCCTTGCAGCTGAAACCAAGACAACAAAGAAGACACTTCACTGATTTGG TTGTGGCTTCAGCCAGCAGCACCGCTTCTCCAACCAGCAGCAATGCCAGTGGCAGATTCTACTTCAACTTCACTGGGTTT CCTTTCCCTCTAGGTCCTTTCCTCAACAGGCGCACTATTAGAACTGAGGTTTTTTACATTGCTCTTGCTTTATTTTATAT ATGTTTCTGTTGCTTATTTTAATCAGTGATAACATGTTTGTTCCACAGGTTAAATTCTCTATAATTACTTCTGGTTACAA GTTATAATAGCATGTTTCTATCAGTACAGGAATGATTATCAATTTGGAAGAATTTCCAAACATGTACTAAGTCTTAGCTC AGGAGTAAAAGTGGCTTGAATTATTTACAAAATGTGAAACCAAACATCCACTTAATTGATTTAGTTGGGGTTTGTATTCA TTGAATTGCTTTTACATAACCATAACATGGTGCTTATGTGATATTTATGTGTTCCTTTTCCTCCAACCTGTTCATTTTTT CTGAATTCTCTTGGAAGTCCTTAATGTTAGATAGAACGCAATGCATTTTTTTTTATTGAATGAAGAAATTTCTGATTTTT TTGCCTTTCATTATTGTGTTTGTGATACTTGATATGCAGATCATTGTGGCCTCTACTTTAACTGGATTATGAGTGCCTTG TTGAAGTAAATTTTTGTTTTGTTTTGCTTTTGCATACTGCTTATAATGTGTAATGGCATGTAGGTATTTCATAGTATATG GAAATCCTATTATAATGCTGGGAACAATTCACTATAGATTTTATGTAGAATTTTTCACTTTCTGATTCTGAGGCTCTTAT ATCTCCTTTTGTTTTGAATCATGTTGTATGTAGGCTGTGAAGGGCTGTATATGGCTATTCGAACAAGAGCAAGCATTAGG CTTCAGCAGCGTTTCAACGAACACTAGGATGACAGTTATCAAACTCAAATCTGGTGGTTTATGGGTTCATGCACCTATAG CTCCAACTGACGAGTGTATTCAGGTTCTGCTTTAAATACAATTTTTTCTTAGTTTGTGATAGAAACTGGATATAAACGAA CAAGGTTGCTGAGTAATTGGAGAGACTCAGCCACTCTCCCTAAGTTCCAAACCCTAAATGATCCAAAAAGATAACAATGA TCACCCTAAACTCTCTATTTACAACATGCCTCACTAACTAACCCTCCCACTAATTAATCAACTCCCACTAACTGAGCGTG TCTAACAGCTTGGAATAACAAAGTAATGTGACTTAACAAAATACCTTAATTGGATATAAGCGAGAGGGTTTTGAAAATAC CAGGTAGCTTTATCATAATTTTCTAACTCAAAAGAAAGAATTTATAATTCCACTCTAGTAATGCTGCAAGGAAATTTCTA TGAAGGATATTTTTGTGACCATAGGAATATGAATCCGTAATTCCGTATTGATACGGTGATTTTATGATGCTTTCTTAACA TGTAAATTGTTTGTTTATTGCAGCTTATTAAGGAGCTGGGGGCTCCTGTTGAATGTATAGTCCTACCTACTTTTGCTTAT GAGCACAAAATATTTGTTGGTCCATTTTCTAGAAAGTTTCCCCTTGCTCAGGTGTGGGTGGCACCAAGGCAATGGAGTTG GCCATTGAATTTACCTTTGGAATTCTTTGGTATTTTTCGCGCTAAAACTTTGAAAGACGAGGATTCGTCCACTCCTTGGG CTGGTGAGATAGAACAAAAGGTTCTGAGCTCACCTGAAGTTGGTAATGATCATCTGTTGTTTTTGCGTATTTTCAAACAT GATCTTCATGAATCAAAAATGTAAAATCTCATTTGTGTGAGAAATGTCTCAGGAATCGGTCCCTATGTGGAAGTAGCTTT CTACCACAAGCCTTCAAGAACACTATTGGTGACCGATGCTGTTATTTTTGTCCCAAGACAGCCACCTGAGTGTATAAGCA AAGAATCCCTGTTAGCATCTGCAAAAAATGGTCTCGCTGTAAAACTTCTAAGTAAAGGAAGGGAGGTACCTGATGACCCA GTTATCGACGACAAAAGGAACCGGCAAAAAGGTTGGCTCTTTTCTTTTTTCTTTTCTTTCTCTCCAACTTGCTTTAAGCA GATTACTTTTCAGTTGAGTTCAAACCAAATTAACCGTGACGGCCATTTTATGCAGGATGGGAAAGAATGGTTCTACAAAT CTTGTTTCTTGGTCCATCCAATCTTTTAGAACCTAATGCTAGCTTTGCACAGATGTCCCAGAAGTTGATTGTTTCACCTA TTGTGAAGACGCTGGTCTTCAGCAAAGTTCCTGAAAAGGTAATAAATCTTCTTTGTGCTGTATCATTTGTTTCTTATTAA TAAAATTTTAGTCTGCTTTTACCAGATAGAGTTGTTAATTGACAATGTGGTCACTAGTTAGTGCGTAAATATATTCCAAC TAACCATTCATGTGTACTGATCTGAATGTTCCAAAAGTAAGACAACTTCTTTGCAAATTCTTGAAATCAGAAAACAGAGT AAAATAAGTTGATGTTTTTTTTAATTATTAATTAAATCATATTAACTGGAAATGAAAACAAAAGAGCAAACTCTACCATT CACAGCGCGTAAATCAACTCGTGTGGAGTTGTTATAGCTTAAGTAGAGGTCTCGGGTTCGAGTCCCTGCGAATGCAACTG TGTTAAATACTTGGTAGAGAGAACAAGTATTAGTGGAGGATACCTGTGGATGAAATTTGCACTTGTTTATGTTCTGTGTT CAGTACTCGGGTTGTCTCCCATAGTGGTCCTACTCTGCTTGAACATGATTTGTCTTAGTGGAGGATACCTATGGTTTAAA CAAACAAAAAAACTTAACCATTCACATCTTGCTTTGTTATTATCATCCAGGTGAGAGAATGGGTTGATAGCATTTCGCGA GATTGGAGGTTCAAGAGAATTATCCCTGCTCACTTTGCTGCTCCAGTAAATGCAAGTAGGTCTGATTTCCGGGCTGCTTT TGCATTTTTGGATGAGTTTTTGGTCGACCCTAATCCAACTTGGCCTTCTCTTTCCCTTCTGTTCTCATCAATCATGGGAA AGGCAGCCAGTTATTTCCCCCCGGATGACATGAGGACCTTATCATCCCTTGACCAGTTTTTAGTTTCAGTTGGAGCAGTG AAGAGAACTGTTTCAGGAAGGAAGCGATGA
CDS sequence (LotjaGi2g1v0263600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCAGCCATTGCTGTTTCTTCTCCTAAGTCCACACTTTTGCAGAACACCATCTATTTGAGCGACCCAAGTTCAAA TTTTGTTGGTGGGTCTTTGAAGGGTCTCTCCTTGCAGCTGAAACCAAGACAACAAAGAAGACACTTCACTGATTTGGTTG TGGCTTCAGCCAGCAGCACCGCTTCTCCAACCAGCAGCAATGCCAGTGGCAGATTCTACTTCAACTTCACTGGGTTTCCT TTCCCTCTAGGTCCTTTCCTCAACAGGCGCACTATTAGAACTGAGGCTGTGAAGGGCTGTATATGGCTATTCGAACAAGA GCAAGCATTAGGCTTCAGCAGCGTTTCAACGAACACTAGGATGACAGTTATCAAACTCAAATCTGGTGGTTTATGGGTTC ATGCACCTATAGCTCCAACTGACGAGTGTATTCAGCTTATTAAGGAGCTGGGGGCTCCTGTTGAATGTATAGTCCTACCT ACTTTTGCTTATGAGCACAAAATATTTGTTGGTCCATTTTCTAGAAAGTTTCCCCTTGCTCAGGTGTGGGTGGCACCAAG GCAATGGAGTTGGCCATTGAATTTACCTTTGGAATTCTTTGGTATTTTTCGCGCTAAAACTTTGAAAGACGAGGATTCGT CCACTCCTTGGGCTGGTGAGATAGAACAAAAGGTTCTGAGCTCACCTGAAGTTGCTTTCTACCACAAGCCTTCAAGAACA CTATTGGTGACCGATGCTGTTATTTTTGTCCCAAGACAGCCACCTGAGTGTATAAGCAAAGAATCCCTGTTAGCATCTGC AAAAAATGGTCTCGCTGTAAAACTTCTAAGTAAAGGAAGGGAGGTACCTGATGACCCAGTTATCGACGACAAAAGGAACC GGCAAAAAGGATGGGAAAGAATGGTTCTACAAATCTTGTTTCTTGGTCCATCCAATCTTTTAGAACCTAATGCTAGCTTT GCACAGATGTCCCAGAAGTTGATTGTTTCACCTATTGTGAAGACGCTGGTCTTCAGCAAAGTTCCTGAAAAGGTGAGAGA ATGGGTTGATAGCATTTCGCGAGATTGGAGGTTCAAGAGAATTATCCCTGCTCACTTTGCTGCTCCAGTAAATGCAAGTA GGTCTGATTTCCGGGCTGCTTTTGCATTTTTGGATGAGTTTTTGGTCGACCCTAATCCAACTTGGCCTTCTCTTTCCCTT CTGTTCTCATCAATCATGGGAAAGGCAGCCAGTTATTTCCCCCCGGATGACATGAGGACCTTATCATCCCTTGACCAGTT TTTAGTTTCAGTTGGAGCAGTGAAGAGAACTGTTTCAGGAAGGAAGCGATGA
Protein sequence (LotjaGi2g1v0263600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAAIAVSSPKSTLLQNTIYLSDPSSNFVGGSLKGLSLQLKPRQQRRHFTDLVVASASSTASPTSSNASGRFYFNFTGFP FPLGPFLNRRTIRTEAVKGCIWLFEQEQALGFSSVSTNTRMTVIKLKSGGLWVHAPIAPTDECIQLIKELGAPVECIVLP TFAYEHKIFVGPFSRKFPLAQVWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDSSTPWAGEIEQKVLSSPEVAFYHKPSRT LLVTDAVIFVPRQPPECISKESLLASAKNGLAVKLLSKGREVPDDPVIDDKRNRQKGWERMVLQILFLGPSNLLEPNASF AQMSQKLIVSPIVKTLVFSKVPEKVREWVDSISRDWRFKRIIPAHFAAPVNASRSDFRAAFAFLDEFLVDPNPTWPSLSL LFSSIMGKAASYFPPDDMRTLSSLDQFLVSVGAVKRTVSGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 443 | 443 | 3.6E-227 | – | |
| PANTHER | 1 | 443 | 443 | 3.6E-227 | ||
| Pfam | 98 | 383 | 286 | 2.2E-96 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0263600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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