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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0266100 |
| Transcript ID | LotjaGi2g1v0266100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich protein; TAIR: AT3G02120.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q8T6J1|ABCA6_DICDI ABC transporter A family member 6; TrEMBL-Plants: tr|I3SJ15|I3SJ15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0266100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73539909..73542946) extracted from Lotus japonicus Gifu genome v1.2.
GTATGAACATAATTGTTTGGGATTTTCTTCTAGTGGGCCATTTGCTCATGTCATGGACAGCACATAAGAATACCAATTCT AGCAATTGGACCGTTGGGAAACCCTTATGCTCAAACGGTCACCTTATCTTCCCCCATTTCATATACACCTTGACCTTCAC CTCCATTGAGCTTGCAATTCCCCAATTCAACACAGACAAACCCTAATTCCACAACAATCTCATCTCACCATGGAAGACAC CACGCTCAAAACACCTCCAAAAATCCCAATTGAAGCTCAATCAACCGAGCCTGAATGCAAAACCCCAACTCCAATTCCAC AACCACCCCAGAATGATGATCCTAATTCCACTGATGAACTCCGCAAATCTCTCATCCCAGATCCTCTTAGAGTCCCCAAA GCATTCAAATTCCCAGAAAGGTATCAAATTTTCAGAGAAATGTGTAAATTACTTCATTTTAGGGTTTAGGGTTTAGGTCA GTGATGTCAACATGTGTTGTTGGTCTGATTGTTGTTCTTCAATTTCTTAGGTATACAAGTCCAACTGATTCGATCATGTC GCCGGTAACCAAAGGTCTTCTAGCTAGAGGCAAAAAGGGTGTGGCAAAATTACCACCTGGTAAATATCATCCAAAGGTAC CAATCAATAGTATTAGCAGCTTGTTCTGCTTAGAAGAACCTATGATTTTTGTTTGTTGTGAATTCACCATTGCTTGCTTG GTTGCATTTGCTGTTCCTGCTTATGATATTGCCCTGTGATTTTTATTGTGGTGTAATGGTGCTGATTCATGTCAATTTGT TAACTGCTGCAGATTCCAGACATGAGCTTGCAGGAAGTGGGTCCTTTTCAGAACAACAAGGTTCCAATTCCAATGTTGAT TGATGAGAGGATCAACTCAATTTGAGGAATTTGATGAACCTTTGCTCATGATGAGTCATGTGATAACAAAGGTTCAAAGG AATCTTTAAAGATGATGTAATATTACAGAGAGAGAGGGAGAGAGAGAGAGAGAGGTTTAGGTCTCAAAGAACTGTCTGTT CTGTAATTGTATGTCTTAGAAATATGTGTTGCAGGTCTTGTTCTCGTGTTAAAAAGTTTTGTACTTTCAGATTCTATTGA ACCTGGGAGAAACTAATAATATAAAGATTCCAATAGGGTCATTTTCATTTTATTACCATTCTTTTGTAGATATTCATGTT TCCTTAACCTTTTCTGATTACTGAACAACTTTCCTAGGTAAATTATAGGGTACAAATTACAAACTTAACATTGGATAAGC AACGAAGATTACCAACTAATAGAAATACAGATTCATAAGAGTCACAAGGTGTTTGAAGAAAGTCCTGCAGGCAAACAAAC CCCAAGTGTGTTTTTTGGGTACAACTTGAGTGTAACGCAAACAACAGACTTTTATATCCGGAAGGAGTGTTTCATTCACT TTTTGCACTGCAGATATCCAAACATAACCTAAATTATCTTATTTAAATGTGCTGGTCCAATACACAAGAGAATGGAATAC TGCATTAGCACTAAATGGTTTTCTCAACTAAACATAATGAGAATGAGTTGGCAAGGCACAAATGAAATGGGTGTGATGGA GTGATTATTCACTCTAAACGGACCTCATACCATTGGACTGAGCCAACATCTCCATCAATTTCAAGTTCACAAACGGACCT CACTAGGAAAGAAACAGCTTCATCAATGGTCTCATATCTTGCAAGATCAGGAGGAAGAGCCTTTCCAGGCCAATTTGTCA GCCGCTCTTTCAATGTGGCCTTCAACTCTTCCTCAGAAACAAACTTCTCATCCTCCCCTGGTTCTAGTAGTACATAAGTT TCAGTTCTCTCATTTGCCCTTCTCCGCCTCAATGCAAAAAGCTGATAAGAAGTGCATGTACTTGGATGTCAGCCTTAGAA CAAAAGCAGAAAATGTGTAGTAGGATGTTATGCAGTTCAACATACGTCAACAAGGCCACTATAAGGAAGCATTCAAATTC AACCCATATAACATTTCTTAGGAGCTTTGGTATGATATTTTCTATTTTCACTACAATCACCCTTTTTAAATTTGACAGCT CTGGATCCCTGACTTCAATGAATTCAGAATTCCCTAACCACCGGGAATTCGGGTTCCATTCCATATATTTCTGCAATCAA GGCTGGTGTAGCTAAAAGACTCTTATCAATACAAGAATATGTTATTTTAGAATACTCATACCTTTGTATTACTTTTGCTA ACACCTGCAATTTGAGGCAGTCTCTGACGGATTAAAGAACTGAAACATTTAACTAGGCCTGGTGAGGTTACATGCATTAC AGGACTCTGAATAGGGTAACTTTCTGCATCTGCAAATAATCAGAAGAAAGTCAGTTCAATAGCAGACCTTGCCTTTTCTA CACAGGGCAACTGTGTTCGAGTATAATTAGAGATTCATGAGCCATGAAATTTTACACTTGGATCTGTTCAAAACTGTGCT GCATATACTATGTTTATGGATGAATCATATAAAAACTGCAACTCTTTTGCACAATCATTGGGGACAAGTGTGAAACATTC AGTTGCAAACATCTCAACTTGACTGGCACCAAATAAACTGGGGATAAGATAATAGAACTGCATTTTTCTTTCCTTCATGT CAAGGAGAAAAACACTATAGCAAGTTGCCCATCTGATTATTTATTTTATGCAGATTAATTCATCAACTAACAATTCAACC ACATTAATAGCTACTAGGTTGTGAAATAAAACTCAGTGCATGTTTGGAAACTCTTCAACAATTGATTTTGCAACCATCAA TTTTGTGGTAAAGCTTATGTGTGTAGCTTCGGAGTTTCAGAATTGATTTTGATGAAGAGAAATTGAAGGCGAAACGATAA GGGCATAGCTTACAAGGGAAGTACCGAGCTCCAACATTGAAGGCCTGAGCCTGCAAAACTCCAACCATAGTAACTATATT GTCCTAAACTTCTTTCATATTTCTGGAGTTTGTGACAAAAAACAGACCCCAACTTATCATCATATCATATATCCCTTG
CDS sequence (LotjaGi2g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACACCACGCTCAAAACACCTCCAAAAATCCCAATTGAAGCTCAATCAACCGAGCCTGAATGCAAAACCCCAAC TCCAATTCCACAACCACCCCAGAATGATGATCCTAATTCCACTGATGAACTCCGCAAATCTCTCATCCCAGATCCTCTTA GAGTCCCCAAAGCATTCAAATTCCCAGAAAGGTATACAAGTCCAACTGATTCGATCATGTCGCCGGTAACCAAAGGTCTT CTAGCTAGAGGCAAAAAGGGTGTGGCAAAATTACCACCTGGTAAATATCATCCAAAGATTCCAGACATGAGCTTGCAGGA AGTGGGTCCTTTTCAGAACAACAAGGTTCCAATTCCAATGTTGATTGATGAGAGGATCAACTCAATTTGA
Protein sequence (LotjaGi2g1v0266100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDTTLKTPPKIPIEAQSTEPECKTPTPIPQPPQNDDPNSTDELRKSLIPDPLRVPKAFKFPERYTSPTDSIMSPVTKGL LARGKKGVAKLPPGKYHPKIPDMSLQEVGPFQNNKVPIPMLIDERINSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| PANTHER | 2 | 111 | 110 | 7.5E-36 | – | |
| Pfam | 67 | 90 | 24 | 1.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0266100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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