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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0266500 |
| Transcript ID | LotjaGi2g1v0266500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05470.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A1J7GM44|A0A1J7GM44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0266500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73595667..73596927) extracted from Lotus japonicus Gifu genome v1.2.
GGCCTCAAATGGAGAGATCACAGAGGGGCCATTGCCAAATTGGCTTGAACTTCCTACTGAAGTGACTGCAAAGATACTGT ACAAGCTTGGTGCCTTTGATATTCTAACCAGTGCACGTCTAGTGTGCCCTTTATGGTGGAAAACTTGCAAGGACCCTCTC ATGTGGCGCACCATCGACTTGACCAACCAACCCCCTAGCTACCCGCACACTGCAATGCTGAAGCTTTGTCGCTATGCGAT TGAACAAAGTTGCGGTCATTTGGAAGATATCAGTATTGATTTCTTTTGCACTGATGAAGTCCTCAAATACATTGCTGATA GGTAGTCTCATCATTATTGTCTTTGTAATTGGCTTCCATGTTTTATGATTTTTAGTGATTCTGTTGCAGGACAGTTCATA AGTATTTTGTGTTTATGATTTTGTTTAAACATGTTTCTTAGTAATTATTTTTTCAAAACTTTACAGCGGAAGCCACCTAC GAAGGATGGGGCTTTTGATGAAATCCTGGGGAATTTCAGATGTAGGAATGATTGAGCTTGTAAAGAAGCTTCCGCTGTTG GAAGAGTTTGAGATTTCATTCAATTGTCTACCTAAGAATATTTTGGAACTTATTGGTCAATCTTGCCCATTTTTGAAAGT GATTAAATTTACACTATTTATTGGGTTTCCTAAAGGCTTTGAGTGTAATGATGATGCGTTCGTTATCGCAAAAACTATGC CTGAGCTACGTCATCTTCAACTTATTGCGAATAGGCTCACTAATGATGGCTTGCTTGCCATTCTTGACGGATGTCGTCAT CTTGAATCTCTTGATCTGCGTGGTTGTTCCAATGTTGATTTGAGCGGGAGTTTGGGGGAAAGATGCTGTAAGCAAATCAA ATATTTATATTTGCCAGAAGATGTAAGTGAATTTTCCTACTACTTTGAAGATGAAGAAGATGATGGTGATTATGATGATT GTTATTATGATCAAGAATGTGACTGGGGAAAGGAAGGGGCATATCATAATTGTGTTGTAGCTCACAGTTATGGTGATTGT ATTCAATGATCCTATGTTCTTGGACATGTTGATCACCTGGTACAGTTCTAAATGATTTATTTTTTGTTAGAAGAGGCTCA ATGGTTCTTCTAAATGCCATGTTCCTCTAATTCTCATGTAGTATCCTGGAATTTAGACTAGTACTTTATACTCATGAGGG GTTCATATACTTTATCAAGATGGCTTCAGTGTTTTGTTTCTGAATCTCTTTTTGGTTGCTG
CDS sequence (LotjaGi2g1v0266500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGCACCATCGACTTGACCAACCAACCCCCTAGCTACCCGCACACTGCAATGCTGAAGCTTTGTCGCTATGCGAT TGAACAAAGTTGCGGTCATTTGGAAGATATCAGTATTGATTTCTTTTGCACTGATGAAGTCCTCAAATACATTGCTGATA GCGGAAGCCACCTACGAAGGATGGGGCTTTTGATGAAATCCTGGGGAATTTCAGATGTAGGAATGATTGAGCTTGTAAAG AAGCTTCCGCTGTTGGAAGAGTTTGAGATTTCATTCAATTGTCTACCTAAGAATATTTTGGAACTTATTGGTCAATCTTG CCCATTTTTGAAAGTGATTAAATTTACACTATTTATTGGGTTTCCTAAAGGCTTTGAGTGTAATGATGATGCGTTCGTTA TCGCAAAAACTATGCCTGAGCTACGTCATCTTCAACTTATTGCGAATAGGCTCACTAATGATGGCTTGCTTGCCATTCTT GACGGATGTCGTCATCTTGAATCTCTTGATCTGCGTGGTTGTTCCAATGTTGATTTGAGCGGGAGTTTGGGGGAAAGATG CTGTAAGCAAATCAAATATTTATATTTGCCAGAAGATGTAAGTGAATTTTCCTACTACTTTGAAGATGAAGAAGATGATG GTGATTATGATGATTGTTATTATGATCAAGAATGTGACTGGGGAAAGGAAGGGGCATATCATAATTGTGTTGTAGCTCAC AGTTATGGTGATTGTATTCAATGA
Protein sequence (LotjaGi2g1v0266500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRTIDLTNQPPSYPHTAMLKLCRYAIEQSCGHLEDISIDFFCTDEVLKYIADSGSHLRRMGLLMKSWGISDVGMIELVK KLPLLEEFEISFNCLPKNILELIGQSCPFLKVIKFTLFIGFPKGFECNDDAFVIAKTMPELRHLQLIANRLTNDGLLAIL DGCRHLESLDLRGCSNVDLSGSLGERCCKQIKYLYLPEDVSEFSYYFEDEEDDGDYDDCYYDQECDWGKEGAYHNCVVAH SYGDCIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 1.8E-60 | – | |
| PANTHER | 1 | 218 | 218 | 1.8E-60 | – | |
| Gene3D | 15 | 119 | 105 | 1.2E-12 | ||
| SUPERFAMILY | 27 | 196 | 170 | 2.55E-14 | – | |
| Gene3D | 125 | 206 | 82 | 6.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0266500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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