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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0267100 |
| Transcript ID | LotjaGi2g1v0267100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SPIRAL1; TAIR: AT1G26355.1 SPIRAL1-like1; Swiss-Prot: sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1; TrEMBL-Plants: tr|I3SRP5|I3SRP5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0267100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73690008..73693330) extracted from Lotus japonicus Gifu genome v1.2.
GATTGTCTTTGCAAGTAATGGACCATGGTCCCCATCATCAGATTGATATGGCTGTCGGCCCCCAAATGCTAGCTCAGCTA AATCTCCTCCACTACCTCAATTAAAAATTTGAAATTGAGTTGAGGCCTCAAATAAATAATAAAGAAATTATTTTTAGTTT TATTTTATTTGAAAAATATTGGCTCCTTTTTTTTTTTGTATGCACATCTGTTTACTCTTAACTGTTTCATTCTGTGCCTC GCTTCTCACTCACATCACCGACTAACAACTGTGAGTGTGAGTGCTCTCGCAAGGTACGGTGACTTCAGATTTCTCTGTTT TCTTCATTTCCATTTAGATCCACACCATTTAGACCTTCCCAATTTTCCCCTTTTGGCTTTGCATTCTCTATTTTTCATTT GTTGTTTTTACATTTAAATTTCTGTCCCTTTCTTTCCTTGAATGCTTGTTTGGATTTTCTTTTTTGCTGAAAAATTAGTA GGGATCAAGCTAAGACAGGACATATAAGAGATACTAGATGAAAATTTGATTGGTTTTTGAAGAAATGGGACTTGAAAGTT TAATGTGTCTTGCAAATTTCTGCTGAAAATGTTTCTGCATTTAACAAATGATTAGGAAATTAATAATACTTGTGCATCTT GGATTTGTTCTTCTGAAGCAAGGGAAGGGAAACTTTTTCCAATTATTCTAATAGCAATGTTTGGATTAGCTTCTTTTTAG TCGGAATCAATTCTGACACTCAAAAGCTACTCTTGTAAGAGTCCCTCCAGAACTGAGTTTAGCTTTATAATCAACTGTGG AAGAATTTCTAAACAGGCCTATGTTATATGTTTTCGCATTTACGCCAATACAAATGTAATTTCACTGATCTCGATGTATA ATCGTAGAAGTAGGTAATTTTAGTTTAATGAAGAAAGGATGGAGGCTTTATATATTTGGAAGTTTTTATATACTCTTAAT TTAAGTAAAATAAATATGTATGCGGATTAAACTTTAGTAAATACTCGAGTGATTTTAACATCATATCCATTTTAGATGGT TGTTGCTTTCTGTTGACTTCTGATGGTTATTGGTTCTGTCTGCTGCATTTGAGGTTAATTTTTTTGTCACTACATGAAAG ATGAATGTTAAATTTCTCATGAAAGAAATTTGTGGTGCTGCTGTATTATAGGTTTAGCCACGAAAGTTCTGAATTGGCAG GGAAATGGGTCGCGGGGTGAGTAGCGGTGGTGGTCAAAGTTCCTTGGGTTATCTCTTTGGCGGCGGAGAGACTGCTGCCA GCAATATCCAAGGTGGGCGTGCTCAAAATGCTGATGTTGCTCCTCCGCCTGTAAATGGTGGGCGTGCTCAAAATGCTGAT GTTACAAACAATCAAGTTGAGCCTGTAATTGGCGGGCGGGCTCTAAATGCTGGTGCTGCTTCACCACCTATTGATAAGGA AATTCCAGCTGGAGTTCCTGGGTGTCTCAAAAACAATTACCACCGTGCTGATGGGCAAAACTGTGGCAACTTTCTCACTG TATGGCCCTTTTCAATTTTTTTGTTTTGATAATTTGAGTTTTACTGCATCATAGTTAGCTCTCATTGGTATTTCTGCTCT AAATATTGTTGCCCCCCCCCCCCCCCCCTACCTTAGCCTGGAAAATACTAGACAGATTAGTACCATAATGTATGAGGATT GGAGTCAGTTTCCTCATATTTCTTATAGTCTACCCTAACTTTTCAGTAAAAAAAGTAATGAAAGCATGGTTCCCTACCCT TTTGGTAAGAAGAAAACCATGTAAGTTATAACATGTTGGAGTAGCAGAAATTCTGTTCTTACATATCCATAAGATAGGAT ATGCACTTTAGGCTGGCTTGCTTATTTTTTATGGTTATCTTGTATGGATCATTCATCATCGTATACTGTTTGTTCTTAAG ATTTGATAGTTTCTCTAATCTGAATTATTGGATTTTGATTGACAGATAACCTAACAATGCCGTTCTCAATCTTAAGAATT ACTATTTCTTCCTCTCTGTCCCTAGTCCCATCTAACCTGATTTATGTTCTGTTTCCTTTTATTCTTCCATCCTCATTTTT CTGTCGGTGAGTGAATAATGGTCTCTCAACTCATGCTTTATGACGCATGCGAAAGAAAATTTTCCTAAGCTTTCCAAGTA GCTATTTCATATTTTGGTTTTAATGGTGACTTCTATTAGAAATTTCCCTCATGACTTCATGTCCATAATGCTTTGTTCAT GATGGAAGTTCGTGTATATGTATGATACTGGCCTTTGTAAACACAGTATGTTATTTGAGTGGTGAGTGAAATCAGATGAG GCATTTGATGATTCAATGTAGTTTTAGTTTCACTTGAGTGAATAATAGTTATTTATGAGTGGAGAAAAAAATACTAAACA ACGACGGTCAACAAGTCTTGTTGTACTTCTCTTCTCCATTCTACACAATAGGATTGGTTTCATGGTTTTGGAGTGAAGAT CAAATGATATTTTTATTTACACATTGAATTTATTGTCCTTGGTTGTAGGCCTTTGTTATGATACTGAAACATTGTTCTTA CTTCTTAATCATTGTTTCTGTTTTTGGTTCCAGGATCGACCATCTACCAAGGTTCATGCTGCTCCTGGTGGTGGGTCTTC CTTGGGTTACCTCTTTGGTAGTCCTGGTGGTAATTAATTCATCAATGTGACTTTAAAGAATGCTTTGCATTCGAACCTAC CATGTGTAAAGTAGATAGTAGCTTGGGTTTAAACAGTGGACTTGTTTCTTGTGCAATTAAACCCTTGACAATGTTGGAGT GGCTTAATGGAATTAAGCTGATTCATAGGTTTGTTGTTTCATGGAATTATGTGGGACTCGATTTCTGAATTTACTATGAG CTAAACTTGCTCACAATTGCTATAGTATTGTGATCATATTCTATTGTAATGCTGACTCTTTTGTAATCACTCGTGGTTAG CTAGTTAGCCTCGTTGCATGTCCTGCTTCTGTTACAGCAGCAATGAGGGAAAAGTTTATTTTCTTTGCAATATGGGGAGA ACCACAATTCCTTTGGTTTTGGAAATATAAATATTTGACGTGCATCCCCTATATTTAAATGTTCTTAGATTGGTATGAAT CACTCGCAGGGTCTTTTATTATGATATAGGACCTTTGTTGTGTGGTTTTAAATTGTGTCAATACATTTATGCTGCTAAAA GTGACAATGTGCTTGTAACCTGTCAACAGTGGCGGAACTTGAAGAAAAAATTTGAGGGAGCTAAAAGAAGATTGCAATAT AAAAACTATAATATTTTGTATTATTAATGCACAAATATTCATA
CDS sequence (LotjaGi2g1v0267100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGCGGGGTGAGTAGCGGTGGTGGTCAAAGTTCCTTGGGTTATCTCTTTGGCGGCGGAGAGACTGCTGCCAGCAA TATCCAAGGTGGGCGTGCTCAAAATGCTGATGTTGCTCCTCCGCCTGTAAATGGTGGGCGTGCTCAAAATGCTGATGTTA CAAACAATCAAGTTGAGCCTGTAATTGGCGGGCGGGCTCTAAATGCTGGTGCTGCTTCACCACCTATTGATAAGGAAATT CCAGCTGGAGTTCCTGGGTGTCTCAAAAACAATTACCACCGTGCTGATGGGCAAAACTGTGGCAACTTTCTCACTGATCG ACCATCTACCAAGGTTCATGCTGCTCCTGGTGGTGGGTCTTCCTTGGGTTACCTCTTTGGTAGTCCTGGTGGTAATTAA
Protein sequence (LotjaGi2g1v0267100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGVSSGGGQSSLGYLFGGGETAASNIQGGRAQNADVAPPPVNGGRAQNADVTNNQVEPVIGGRALNAGAASPPIDKEI PAGVPGCLKNNYHRADGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGSPGGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 128 | 128 | 1.8E-41 | – | |
| PANTHER | 1 | 128 | 128 | 1.8E-41 | ||
| MobiDBLite | 111 | 132 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cortical microtubule organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. |
Expression pattern of LotjaGi2g1v0267100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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