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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0270400 |
| Transcript ID | LotjaGi2g1v0270400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT3G02310.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2; TrEMBL-Plants: tr|A0A072U5X0|A0A072U5X0_MEDTR MADS-box transcription factor; Found in the gene: LotjaGi2g1v0270400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74122106..74126593) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAAGAAAGTTGTATGAAAATGGAAACTATAACACCAACCCTAGGCTAAGCTAAGCTAAGATGCATTCATCTCTTTT TTCCTGGTGAAGATAAAAAAGATGATATTGATAACACAAGAAGAATGCAGAAGTAGTAGTAGCAGTGTGTTTGGTTTCTC TCTCTTCTAATTTTTCTCTCTTTCTAGGGTTTTCTAGTGTCTCTTGTGTTTTCACAAATTTGGTTACATTTGGGGACTCA CCCAGAAAAAGAAGGTTCAGCAGGTGCCAAGAGAAGGAGATTAATAGTTTAGAAAATAATAAAGAAATTAATAAATAGGA AAAGGGAAATTTTTTGAGTGAGAGTGAGGAATTGAATAAACTAGCTTAGGTTGGGAATTGAAAATGGGGAGGGGAAGAGT GGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCTAAGAGGAGGAATGGGCTTCTCAAGAAAGCCT ATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTTTGTAGC AGCTCTAGGTATGCATATATCATGTATCATGTATCATGTGTTTGTTATGGTTAATTTGTGCTTGTGTGTTTTGGGGGAGG GACTATTAATTAATTATACACATATTATTGAATGAGTTTCTTTTATGTCTTTCCCTCTATTAAATTTGTGTATATAGCTA ATTTCTCTTTGTTGATGAGATAGATTCTAGTCTTTTAAGCTGCAAAATTTTGATTTTTTTTTCTTTGTTGATGTATAAGA TCTATTTGGGTAATGGGTTTCTTTTTTTTGGAATGTGATTTTTTTTATAAGGCAACAAATTTCATTGATGAAAAAGAAAT GAGTACAAGGCTTGTGTGAGCTCTATTGGGTTGAGAGGAGTTTGATGCTTCTCTTTAATTTCTTTGAGCTGGTGTTTGAA GAAATCAAGCTTCAACTTTGATTTCATATTTTGAATGTAACAGTGTGGATGAAATATGAGATCTGGAGATACAGTACATG ATCTGGTGAATTGTTGTTGTTGTGCTAGCTGTTTACTTGTACTATGATTTTTTTGTTGGATTAGTTATTGTTGATTGGAC TCTCCTTTTTACTTTCTCCCTCCTGTTTTTGAGGGATTTGATATTCTGCTTAATTTCTTGTAATCATCATCTTCATCTGC TTCTTTTCATTTTTTTAATGCCTTTTTGTACAAACTGATGATGAGTACTAGGTCAGTAGATCTGCTCCTTTTATTGACAT GGTTTTTGTAAGTTTTCTTTAGATTTAATTTCCTTCAAAATTCTGGCTAAGTGAGTTGCTTGAAACTTCTAGTTGTTAGC AGAATTCCTACTAGATTATCTTGAAATGCAATGCAAATTTCTATAATATTATTTGCTTACTTTTGATACAAAGAGTTTTA CATCTGAAAAGCATTTAATATGATAAATTTCATCAGCTTTCAACCATGTACCATTGTGTGCATTTCTTCTCTAAAATAAC TGTATTAACAAGTTTTTTTTAAGGTGTAAGTTAATTATTATATATAAAACATATCTCATTTACCGAACAACTTAAGCTTT TGGGAAACAGCTTAATATACGGACAACGAGATGATGTTAATATATTTTTCTTCCTTCTAAGCTGCTTGATCATGTTCTAG GCTTCTAGCGAATCAACACAGTGCAAACATTGTGCTTTCATATATTAGGACCATATTTGGTTTGGTGTGGAATTTGTGAT TGAATGAAATGGATGATTTGTATGATTTGTTTGGTATGCCTTGAAATATAATTATGATTTGGTTATCCATCATCATATAC ATATGATATATCATCATTAATTTGACGGTTCTTCCTCTCTTCCTTCAAGCAGCATGCTCAAAACGCTTGATAGGTACCAA AAGTGCAGCTATGGTGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGGTACCAACTGTTTTTCTTTAACAAACATC ATAGCATATTAGCATTAACATCTCTTAGAAATTTCACATAGGAAAGCCTTTATACTGCTATAATTTTGAACATATATATA TGCCAACTTATTATAGAATTAGAATCTATAACGCATGTTTTTTTACTACGAGATTGTGAAGCAGTTTTGTTAATTTTCAC TTGTCACTTGCCTTTTTAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCC AGAGGTGAATTTCATACAAGAATAAATGTTTTTAAAAATATAAAAACACCAAAACTCTTCATACAATTAGTACTTGAAAG AACTTATAAGAATATTGTCTTCTACTTTTTCTTGTAGTCAGTTTAGCCACCATTGTTGATTTTTCTTATTTTTCAGTGAT TTAGCTTAAGTACTTTTTCATTATGATCAATGTATATTGTTTGCTGCAGAAACCTTCTAGGTGAAGACTTGGGCCCCTTA AATAGCAAAGAACTCGAGCAGCTTGAGCGGCAACTAGATGCATCTCTGAAGCAAGTGAGGTCCACAAAGGTAATTAAATA TTCATGTTCAATTTTCATAAAATCAGAGATTAAAAGTTCACTAACTTGGTACTTATTAGTTGTGACAATGACCATAGTTA CCTGACTAGCTAATGCAATTATCATCATAGGATTTCACATCTTTGTAGAAGACATTCTATAACAACTTTTTTGCAACTAA TAGTGATTATTCAAAATGAGACTAGATTGGAATCCTAGTTTACTAGTCTATGAAAAACTTATCTTGATTCCTGTTATGTG GTCATTTTGCAGACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGTAAATGGTGTTCTCATAGCTATAAA ATAGAAACAACTTAATGTGTGCCTAACACTTTTAAGCTATTGCATGGATACAGGAGCACATGTTAATAGAAGCAAACAGA GCTTTGAACCTGAAGGTAACATTATACTTGAACTTCATACTTCATACAACAAGCAAAAAGATTGGCAATATAGCATTCAT GTTGCTTCTCTATAGCAAATTAAATTTTGTAGAAAACATATGGCATAGTGTGATAATTTTTTGGTACTAAATCTGCTCCC ACAAATCCATTAAGAAGTACAACCTTGCACCTATATTCTTGGGCAATCAGATAGGAATTGGATATTTAGAAGTTAAAAAT TCTTGCAAAGAGCCCTTAAGATTAGTCTTAGAAGAACACCTATGAATTTCATGAAATAGAATGTATAAGAACCTTCTCAA AGTGCCTCCTCCATTTTCTCCTCTTCTCTGTCCATTCAACATCAGTGTATTGCTCTTAATTTCCTCTTACATGAGTTGAT TGTTTGTGCCCTTATCTTTATACTCATAACATGAAAAATACTATTTTGTATTGTTTAATGTCCCTTGAATATTTATTCTT TCATTCACATTTAAGTCCTTTGCTGAAGAGTGTTTTCATGACTATTCTTTTGGCAGTTGGAAGAAATCAACTCAAGCAAC CATTATAGGCAAACATGGGAAGCTGGTGATCAAAGCATGGCATATGGTAACCAGAATGCTCCTTCTCAAAGCTTCTTCCA ACCTTTGGAGTGCAATCCCACATTACAGATAGGGTAATCCACAATCATTTTCTTGTCTATTGTTACTTAATTAACTAATA GAAACTCACAATATAGTGACCAATTTAGTGTCTCATGTGAAAAAAATAAATTCAGTCGCTAATTCGGTTGCTATACTGTT AGCTACGAAAAAACTGTTAGCAACCGATTTTAATGTATCGGAGACTGAAAATATGGTCTAGCTGTTAAGGTTATTTGAAT TATATTTTAACATTTGTCCCTGGATGCAGTACTGATTACAGGTACAGTCCTGTAGCTTCAGATCAGCTAAATGCCACAAC TCAACCTCAACAAGTGAATGGTTTCATTCCTGGATGGATGCTTTGAACTTAGCTCAGTGTTTGGCTTGCTACATAAATGC AAACATCTAAGGCCAAAAACAGATGTATCTTTTTGACAATGTGTAAATGCTGCATGTGCTTCTGTTATTTGTTTTGGGAC AAAAACAGCAGTGGCTGACTCTTAGAACTATGGATACCTTTAGCCATAGACATTTGGCATATAAGAAGTTAATTTGTAGT ACTTTGAATATCTTTGGAGGAGAACTTGTGAACGACCAGTCAGTTTCATTTTTCTTCTTGATTACTTGCTAATCTTACTG CTTTATGAATTGCTTTTAACCATCAATCTTACATTCATTAGTGGAGGGTTGGATTTATATGATGTGAAATTATTGTAAAT ACAATGTGAAACTATGGCAATTGGCAAGATCAAAAGAGAACTTAGGAAAAATAGAAACTAAGAACTAAGGTCTTGAGCCT TGACAGCTTTATGATTTGCAATGGTCTGGTCTATTTGGTGTGTGTACGTAATGATGTAATTTTCATAAATGTTAATTTGT GTATTCCA
CDS sequence (LotjaGi2g1v0270400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCTAAGAGGAGGAATGG GCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGCAAGC TTTATGAGTTTTGTAGCAGCTCTAGCAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAA GTCAACAAACCTGCCAAAGAGCTTGAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAG GACCCAGAGAAACCTTCTAGGTGAAGACTTGGGCCCCTTAAATAGCAAAGAACTCGAGCAGCTTGAGCGGCAACTAGATG CATCTCTGAAGCAAGTGAGGTCCACAAAGACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCACATG TTAATAGAAGCAAACAGAGCTTTGAACCTGAAGTTGGAAGAAATCAACTCAAGCAACCATTATAGGCAAACATGGGAAGC TGGTGATCAAAGCATGGCATATGGTAACCAGAATGCTCCTTCTCAAAGCTTCTTCCAACCTTTGGAGTGCAATCCCACAT TACAGATAGGTACTGATTACAGGTACAGTCCTGTAGCTTCAGATCAGCTAAATGCCACAACTCAACCTCAACAAGTGAAT GGTTTCATTCCTGGATGGATGCTTTGA
Protein sequence (LotjaGi2g1v0270400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLDRYQKCSYGAVE VNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLDASLKQVRSTKTQFMLDQLADLQNKEHM LIEANRALNLKLEEINSSNHYRQTWEAGDQSMAYGNQNAPSQSFFQPLECNPTLQIGTDYRYSPVASDQLNATTQPQQVN GFIPGWML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 33.515 | ||
| SMART | 1 | 60 | 60 | 1.3E-41 | ||
| PANTHER | 2 | 198 | 197 | 6.7E-102 | – | |
| SUPERFAMILY | 2 | 79 | 78 | 8.89E-34 | ||
| PANTHER | 2 | 198 | 197 | 6.7E-102 | – | |
| CDD | 2 | 77 | 76 | 7.02365E-46 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| PRINTS | 3 | 23 | 21 | 9.0E-33 | ||
| Pfam | 10 | 57 | 48 | 3.5E-26 | ||
| Gene3D | 13 | 77 | 65 | 7.1E-29 | ||
| PRINTS | 23 | 38 | 16 | 9.0E-33 | ||
| PRINTS | 38 | 59 | 22 | 9.0E-33 | ||
| Pfam | 86 | 172 | 87 | 1.3E-26 | ||
| ProSiteProfiles | 88 | 178 | 91 | 15.477 | ||
| Coils | 125 | 145 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0270400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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