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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0270400 |
| Transcript ID | LotjaGi2g1v0270400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT3G02310.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2; TrEMBL-Plants: tr|A0A072U5X0|A0A072U5X0_MEDTR MADS-box transcription factor; Found in the gene: LotjaGi2g1v0270400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74122489..74126071) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCTAAGAGGAGGAATGG GCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGCAAGC TTTATGAGTTTTGTAGCAGCTCTAGGTATGCATATATCATGTATCATGTATCATGTGTTTGTTATGGTTAATTTGTGCTT GTGTGTTTTGGGGGAGGGACTATTAATTAATTATACACATATTATTGAATGAGTTTCTTTTATGTCTTTCCCTCTATTAA ATTTGTGTATATAGCTAATTTCTCTTTGTTGATGAGATAGATTCTAGTCTTTTAAGCTGCAAAATTTTGATTTTTTTTTC TTTGTTGATGTATAAGATCTATTTGGGTAATGGGTTTCTTTTTTTTGGAATGTGATTTTTTTTATAAGGCAACAAATTTC ATTGATGAAAAAGAAATGAGTACAAGGCTTGTGTGAGCTCTATTGGGTTGAGAGGAGTTTGATGCTTCTCTTTAATTTCT TTGAGCTGGTGTTTGAAGAAATCAAGCTTCAACTTTGATTTCATATTTTGAATGTAACAGTGTGGATGAAATATGAGATC TGGAGATACAGTACATGATCTGGTGAATTGTTGTTGTTGTGCTAGCTGTTTACTTGTACTATGATTTTTTTGTTGGATTA GTTATTGTTGATTGGACTCTCCTTTTTACTTTCTCCCTCCTGTTTTTGAGGGATTTGATATTCTGCTTAATTTCTTGTAA TCATCATCTTCATCTGCTTCTTTTCATTTTTTTAATGCCTTTTTGTACAAACTGATGATGAGTACTAGGTCAGTAGATCT GCTCCTTTTATTGACATGGTTTTTGTAAGTTTTCTTTAGATTTAATTTCCTTCAAAATTCTGGCTAAGTGAGTTGCTTGA AACTTCTAGTTGTTAGCAGAATTCCTACTAGATTATCTTGAAATGCAATGCAAATTTCTATAATATTATTTGCTTACTTT TGATACAAAGAGTTTTACATCTGAAAAGCATTTAATATGATAAATTTCATCAGCTTTCAACCATGTACCATTGTGTGCAT TTCTTCTCTAAAATAACTGTATTAACAAGTTTTTTTTAAGGTGTAAGTTAATTATTATATATAAAACATATCTCATTTAC CGAACAACTTAAGCTTTTGGGAAACAGCTTAATATACGGACAACGAGATGATGTTAATATATTTTTCTTCCTTCTAAGCT GCTTGATCATGTTCTAGGCTTCTAGCGAATCAACACAGTGCAAACATTGTGCTTTCATATATTAGGACCATATTTGGTTT GGTGTGGAATTTGTGATTGAATGAAATGGATGATTTGTATGATTTGTTTGGTATGCCTTGAAATATAATTATGATTTGGT TATCCATCATCATATACATATGATATATCATCATTAATTTGACGGTTCTTCCTCTCTTCCTTCAAGCAGCATGCTCAAAA CGCTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGGTACCAACTGTT TTTCTTTAACAAACATCATAGCATATTAGCATTAACATCTCTTAGAAATTTCACATAGGAAAGCCTTTATACTGCTATAA TTTTGAACATATATATATGCCAACTTATTATAGAATTAGAATCTATAACGCATGTTTTTTTACTACGAGATTGTGAAGCA GTTTTGTTAATTTTCACTTGTCACTTGCCTTTTTAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGA ATCTCTTCAAAGGACCCAGAGGTGAATTTCATACAAGAATAAATGTTTTTAAAAATATAAAAACACCAAAACTCTTCATA CAATTAGTACTTGAAAGAACTTATAAGAATATTGTCTTCTACTTTTTCTTGTAGTCAGTTTAGCCACCATTGTTGATTTT TCTTATTTTTCAGTGATTTAGCTTAAGTACTTTTTCATTATGATCAATGTATATTGTTTGCTGCAGAAACCTTCTAGGTG AAGACTTGGGCCCCTTAAATAGCAAAGAACTCGAGCAGCTTGAGCGGCAACTAGATGCATCTCTGAAGCAAGTGAGGTCC ACAAAGGTAATTAAATATTCATGTTCAATTTTCATAAAATCAGAGATTAAAAGTTCACTAACTTGGTACTTATTAGTTGT GACAATGACCATAGTTACCTGACTAGCTAATGCAATTATCATCATAGGATTTCACATCTTTGTAGAAGACATTCTATAAC AACTTTTTTGCAACTAATAGTGATTATTCAAAATGAGACTAGATTGGAATCCTAGTTTACTAGTCTATGAAAAACTTATC TTGATTCCTGTTATGTGGTCATTTTGCAGACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGTAAATGGT GTTCTCATAGCTATAAAATAGAAACAACTTAATGTGTGCCTAACACTTTTAAGCTATTGCATGGATACAGGAGCACATGT TAATAGAAGCAAACAGAGCTTTGAACCTGAAGGTAACATTATACTTGAACTTCATACTTCATACAACAAGCAAAAAGATT GGCAATATAGCATTCATGTTGCTTCTCTATAGCAAATTAAATTTTGTAGAAAACATATGGCATAGTGTGATAATTTTTTG GTACTAAATCTGCTCCCACAAATCCATTAAGAAGTACAACCTTGCACCTATATTCTTGGGCAATCAGATAGGAATTGGAT ATTTAGAAGTTAAAAATTCTTGCAAAGAGCCCTTAAGATTAGTCTTAGAAGAACACCTATGAATTTCATGAAATAGAATG TATAAGAACCTTCTCAAAGTGCCTCCTCCATTTTCTCCTCTTCTCTGTCCATTCAACATCAGTGTATTGCTCTTAATTTC CTCTTACATGAGTTGATTGTTTGTGCCCTTATCTTTATACTCATAACATGAAAAATACTATTTTGTATTGTTTAATGTCC CTTGAATATTTATTCTTTCATTCACATTTAAGTCCTTTGCTGAAGAGTGTTTTCATGACTATTCTTTTGGCAGTTGGAAG AAATCAACTCAAGCAACCATTATAGGCAAACATGGGAAGCTGGTGATCAAAGCATGGCATATGGTAACCAGAATGCTCCT TCTCAAAGCTTCTTCCAACCTTTGGAGTGCAATCCCACATTACAGATAGGGTAATCCACAATCATTTTCTTGTCTATTGT TACTTAATTAACTAATAGAAACTCACAATATAGTGACCAATTTAGTGTCTCATGTGAAAAAAATAAATTCAGTCGCTAAT TCGGTTGCTATACTGTTAGCTACGAAAAAACTGTTAGCAACCGATTTTAATGTATCGGAGACTGAAAATATGGTCTAGCT GTTAAGGTTATTTGAATTATATTTTAACATTTGTCCCTGGATGCAGTACTGATTACAGGTACAGTCCTGTAGCTTCAGAT CAGCTAAATGCCACAACTCAACCTCAACAAGTGAATGGTTTCATTCCTGGATGGATGCTTTGA
CDS sequence (LotjaGi2g1v0270400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCTAAGAGGAGGAATGG GCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTAACCGTGGCAAGC TTTATGAGTTTTGTAGCAGCTCTAGCAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGTGCAGTAGAA GTCAACAAACCTGCCAAAGAGCTTGAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCA AAGGACCCAGAGAAACCTTCTAGGTGAAGACTTGGGCCCCTTAAATAGCAAAGAACTCGAGCAGCTTGAGCGGCAACTAG ATGCATCTCTGAAGCAAGTGAGGTCCACAAAGACCCAATTCATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAC ATGTTAATAGAAGCAAACAGAGCTTTGAACCTGAAGTTGGAAGAAATCAACTCAAGCAACCATTATAGGCAAACATGGGA AGCTGGTGATCAAAGCATGGCATATGGTAACCAGAATGCTCCTTCTCAAAGCTTCTTCCAACCTTTGGAGTGCAATCCCA CATTACAGATAGGTACTGATTACAGGTACAGTCCTGTAGCTTCAGATCAGCTAAATGCCACAACTCAACCTCAACAAGTG AATGGTTTCATTCCTGGATGGATGCTTTGA
Protein sequence (LotjaGi2g1v0270400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLDRYQKCSYGAVE VNKPAKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLDASLKQVRSTKTQFMLDQLADLQNKEH MLIEANRALNLKLEEINSSNHYRQTWEAGDQSMAYGNQNAPSQSFFQPLECNPTLQIGTDYRYSPVASDQLNATTQPQQV NGFIPGWML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 33.515 | ||
| SMART | 1 | 60 | 60 | 1.3E-41 | ||
| PANTHER | 2 | 187 | 186 | 1.3E-101 | – | |
| PANTHER | 2 | 187 | 186 | 1.3E-101 | – | |
| SUPERFAMILY | 2 | 79 | 78 | 8.76E-34 | ||
| CDD | 2 | 77 | 76 | 7.0885E-46 | ||
| PRINTS | 3 | 23 | 21 | 9.2E-33 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 3.6E-26 | ||
| Gene3D | 13 | 97 | 85 | 9.1E-29 | ||
| PRINTS | 23 | 38 | 16 | 9.2E-33 | ||
| PRINTS | 38 | 59 | 22 | 9.2E-33 | ||
| Pfam | 89 | 173 | 85 | 2.5E-26 | ||
| ProSiteProfiles | 89 | 179 | 91 | 15.486 | ||
| Coils | 126 | 146 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0270400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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