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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0272700 |
| Transcript ID | LotjaGi2g1v0272700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BZIP transcription factor family protein; TAIR: AT3G30530.1 basic leucine-zipper 42; Swiss-Prot: sp|Q9FMC2|BZP43_ARATH Basic leucine zipper 43; TrEMBL-Plants: tr|I3SUK3|I3SUK3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0272700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74361037..74363143) extracted from Lotus japonicus Gifu genome v1.2.
CACCCTTTGGGCCACTTGTGTCTGTGCACCATGCATCATTCATTCACACATAACATGTCACATATATGGGATGTACACAT AACATAAGTGCAATGCTTTTTAGAATAAGCAAAGAGAGTACAAGTGCAACCAACAAAACCCAGAACATAGACATCATCTG CACGAGGACATTCCATTAATGTTTAACAAAACTTCAACATTGTGAGTCAGTGGGGCCAGTATTGAGGACACTGAGAGAGC TCAAAGTAGAAGAGCATGCACCAATGAACTAACACTAAAAATGACTTAGAGCACAAATTCACTTCTTTATCCAAAATTTA AAGCATGATTTATGCGACGTCACGTATTTTTTTCTGACTTTACGTTATCTGTTCTTAATCAATGTGAGACACCACACTTC GCACTTAAATTACCAACGGTTACTCAATGGGGCCAGTTCCTAATTTCCCACACTATATAACACCTACTCCACCCACTCTT TCTTGCTCTTCCTCAAAACCAATTGAACTCACTCTCCATCACAACCATGCAGGCCAGAGAAGCACCAGGACTCAATTATA TGCTCCCTTCAAACCCACCTCCTTATCCAGCTAACTACACCATGATTCAGAACAACATTCCCACATTCCAATTCCAAAGA TTCTCTAACCAATTGTTTCAAGTACCAGATTTCAGTCCTCAATCCTCATGTATCAGCAGCAATTCCACTTCTGATGAAGC AGATGAGCAGCAACAAGGTCTGATCAATGAGAGGAAACACAGGAGGATGATATCAAACCGAGAATCAGCGCGGCGATCGC GCATGAGGAAGCAGAGGCACCTTGATGAGCTCTGGTCACAGGTGGTTTGGCTCAGGAATGAGAATCACCAGCTACTTGAC AAGCTGAGCCATGCCTCAGAGAGCCATGATCAAGTGGTTCAAGAGAATGCTCAGCTGAAAGAGGAAGCTTTAGAGCTTCG CCAAATGCTAAGGGACATGCAGATACACAGTCCCTGCCCTTCCTTTGCCCCTCTTGAAGATGCCTATCTGAGATCTGATT CTCCAAACCAATCCATCTCAAGTTCCATGGACCTGCTTGGTTAATTTGAAAACAAGCTAGGCCAAAATTTTCTCTGCCTG GTTTCACAATTTGCACAGAATCCAATACAAGTTTATTCATAAGCTAAGACTTTCAGTTGCAGCTTCCAACTAGAAGCGAT TCTAGAGCATTTCGTCGTGGAACCAAACATGTTTTTAGTCTTCTTCTTTTTTTCACTTTTGGTTTTTCTATCTCTGTGGA AGTTAAAAGTAGCAGCCTTTTACTTGTATGGTTGGAAGGTAAATGGCAATAACATGTCTTTTGAATATCATTATTTGAGC CTTTAGTTCATAAATTTGGCACTGGTCACTAGTCACTACCTATCTTTGATGATCTTTTTTAAAATGGTGTTGTCTCAGAT TTTTATGTCTAGAAATAAACATCTAAAGAGGCTTAAGACTTATCTATAAACTTTCTGGGTTAATTGTTAATATCAACTTG TTGGACACCCAGCATGGTCAAAAAATCCATCATGATTGATTCCTCTGCCCATAGAACAATATAGAAAGCCTTCATGACCT CATCTTCCAGCAATAATCAGAGCATTTTGGGCAGATTAAAGGAAGAAAAAGAGAAGATCATAAAATAAAGAAGATATGAA GGCAACATAATCCTATATATGTATGATATGTGTAAAATAATAGAACTGATTATGTCAGGTGGAATTGGATTGGGAGAGTT GGACAAGACACAGAGATAAAAGAGTGTCTGTAGTGGTCATTGGCTGATGATACAAAAGTTGCCATAAAAAGGAAAACATT TGACAGGCCACCCACTACAATTCTTATCACAAATCTTTTTCTGAGCTACCTTGACTGCATATTATTGGAAAATAACTGAA GCTTTGGTTTTGATAGGGATCCAACAGAAGTTGTGTATTGTGTTCAATTGCCACTGATGCACTTTATCCCATAGTATGGC TCTTCAATGAAAATTGGGAAAAGAAAAAGAAAAAAACTAGGCTTAAAAGCATTTTGTGCCCCTGATGTATCAAGTTTGAG CAAGTGTCACCCCGTTCTTTTTTCGTC
CDS sequence (LotjaGi2g1v0272700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGCCAGAGAAGCACCAGGACTCAATTATATGCTCCCTTCAAACCCACCTCCTTATCCAGCTAACTACACCATGAT TCAGAACAACATTCCCACATTCCAATTCCAAAGATTCTCTAACCAATTGTTTCAAGTACCAGATTTCAGTCCTCAATCCT CATGTATCAGCAGCAATTCCACTTCTGATGAAGCAGATGAGCAGCAACAAGGTCTGATCAATGAGAGGAAACACAGGAGG ATGATATCAAACCGAGAATCAGCGCGGCGATCGCGCATGAGGAAGCAGAGGCACCTTGATGAGCTCTGGTCACAGGTGGT TTGGCTCAGGAATGAGAATCACCAGCTACTTGACAAGCTGAGCCATGCCTCAGAGAGCCATGATCAAGTGGTTCAAGAGA ATGCTCAGCTGAAAGAGGAAGCTTTAGAGCTTCGCCAAATGCTAAGGGACATGCAGATACACAGTCCCTGCCCTTCCTTT GCCCCTCTTGAAGATGCCTATCTGAGATCTGATTCTCCAAACCAATCCATCTCAAGTTCCATGGACCTGCTTGGTTAA
Protein sequence (LotjaGi2g1v0272700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAREAPGLNYMLPSNPPPYPANYTMIQNNIPTFQFQRFSNQLFQVPDFSPQSSCISSNSTSDEADEQQQGLINERKHRR MISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLLDKLSHASESHDQVVQENAQLKEEALELRQMLRDMQIHSPCPSF APLEDAYLRSDSPNQSISSSMDLLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 172 | 172 | 2.4E-84 | – | |
| PANTHER | 1 | 172 | 172 | 2.4E-84 | – | |
| MobiDBLite | 50 | 68 | 19 | - | – | |
| MobiDBLite | 50 | 73 | 24 | - | – | |
| SMART | 72 | 136 | 65 | 5.6E-14 | ||
| ProSiteProfiles | 74 | 137 | 64 | 10.438 | ||
| Gene3D | 76 | 129 | 54 | 2.3E-15 | – | |
| SUPERFAMILY | 76 | 125 | 50 | 4.5E-13 | – | |
| Pfam | 76 | 126 | 51 | 2.3E-12 | ||
| CDD | 77 | 128 | 52 | 1.37271E-17 | – | |
| ProSitePatterns | 79 | 94 | 16 | - | ||
| Coils | 120 | 154 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0272700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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