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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0278500 |
| Transcript ID | LotjaGi2g1v0278500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G25855.1 Copper transport protein family; Swiss-Prot: sp|Q84J88|HIP36_ARATH Heavy metal-associated isoprenylated plant protein 36; TrEMBL-Plants: tr|G7JZE9|G7JZE9_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi2g1v0278500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75019500..75020679) extracted from Lotus japonicus Gifu genome v1.2.
GAAGTTAAGGATAAAAAGGACCAAGACAAAAAACTACCTCTTAGCCTAGTCCAGCTCCGAGTAGAATCAGATTCCAAAAT GAAGGGAGACATAGTATCTTACTTGTTTTAGACAACACAAAAATTATAAATACAAGTTGATCCATTACCAAGAACATTCA TATTCTCTGACCCCCACAAATTTCCTTTTTCCTATGCCTTTTGGCTTTTTTCCAAAAGTAGAACCAATCCTGGGTGCCGC CACTTCCAACCCCATGTCCGAACAGGCAAGTTTTTTTGTTCTATTCCCACAAATACACTTCCTTTTCACGGATCAACATC TTCTGTCTCATTTCCTGTTTAATTTTTCTGTCATAACACTGAAACTTTGACATGCTATATATAAAAAACATGCGTGAGCC GGTTACAAACTTACAATTGTACTTTGTGATTGATATGATGAACATTTATTGGTGAGACAGGAAAACGAGACGCGAAATTG AGACAAACTATCTTATCCACTTTTCACAAGACGACTGATAATTTTGTTAAAATGATTTATAGATTTTGATGTTGGTTTCG TTTTTACAATTGCAGTACTGTTGCATGATCATGAGAATCAATGTTGATTGCAATGCTTGCTGCAGAAGATTAAGGAGAAT CCTTCTAAGGATGAAAGGTAAAAGATTTTCACAATGAATCTAATCTATGTAAGTGTTATTGTTAAAAACAAAGAGAAACT AGGGAAATTCTAACAATTCTCATTGGTTATTGAAGTAATAGAGACTCATTTGATAGAGAAGCAGCAGCGCAGGGTATGTG TCTGTGGCAGATTTGTACCAGCAGATGTTGCAATCAAGATACAGAAGAAATTGAATCGTAGAGTTGAGATTCTTGAAGTA CAGTTCGAAGGCGAAGAAGATCATAATGAACCACCATAGAAAGTAACCCAGGAGAGTTCAGAGAAACCTTAAAATGACCC AGAGATGCCTACGGCATAGTGTACATAATAGGCTACTTTGTAGCAGTTGTTTGTGGTTACTTTCAAAAGTACTATATGGA AATTGTTGGGAAGAAGAAAATGGTAGACGATCTACGCAGAAAAATAATAATACACGTTACATGTAGAATTCTTAGAAGGA CTTAATGTATGTACTTTACATGAATTGTTTGTCACATCAGAAAGTAAACTTGATAAATCT
CDS sequence (LotjaGi2g1v0278500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTTTGGCTTTTTTCCAAAAGTAGAACCAATCCTGGGTGCCGCCACTTCCAACCCCATGTCCGAACAGTACTGTTG CATGATCATGAGAATCAATGTTGATTGCAATGCTTGCTGCAGAAGATTAAGGAGAATCCTTCTAAGGATGAAAGTAATAG AGACTCATTTGATAGAGAAGCAGCAGCGCAGGGTATGTGTCTGTGGCAGATTTGTACCAGCAGATGTTGCAATCAAGATA CAGAAGAAATTGAATCGTAGAGTTGAGATTCTTGAAGTACAGTTCGAAGGCGAAGAAGATCATAATGAACCACCATAG
Protein sequence (LotjaGi2g1v0278500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFGFFPKVEPILGAATSNPMSEQYCCMIMRINVDCNACCRRLRRILLRMKVIETHLIEKQQRRVCVCGRFVPADVAIKI QKKLNRRVEILEVQFEGEEDHNEPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 102 | 82 | 5.3E-53 | – | |
| PANTHER | 21 | 102 | 82 | 5.3E-53 | – | |
| Gene3D | 26 | 94 | 69 | 6.7E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0278500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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