Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0283100 |
Transcript ID | LotjaGi2g1v0283100.1 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | SOSS complex subunit B like; TAIR: AT5G63690.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog; TrEMBL-Plants: tr|C6T2C8|C6T2C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0283100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75549791..75556592) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAATTTTTCATTAATTTTGGTCTCTTCATCCATTCTTTGGCATTCTATGGCGGCTTAAACCGTCACTAACATATTTT ATCGCGGTTATAATCTATTTTATTCATTTTTAAAAAAAAAAAAAAAAAAAACCCTCAATCATCGTACCCTCTCTGCCGAC TCACGCACGCTCTGTCGCTCTCGGCCTCTCTCTGCTCTCCAGCCTCTCCTTCATTCGAAGCTCTCTCTCTCTGTTCGTGC CTCTCCTCTCCATCGAACTGATCGAAGCTCTCTGCCTCAGTGCCTCTCAACTGCACGCACGCGACGACCGACGACGGTTT GGAAATTCACTTCTGTTCAGCAAAAAAGATGAGATGTAATGATAGCTAAATTTTCTTTCCTGAATTTTCTTTCTCACTTC CCTGAATTTTCAGATTTTGGAAATGGCTTAGATGCAAAGCAAATGGGTTTTCTTACTCTTATTATGAGTGGCATACAAAC CCAGTTATCTGTTTAGAAGGGTTGTCATAGTTAGCAAGGTACACAAATTGATGTTGGGATGCTTGCATTCATATGGGTGG CAATTACAAGTTGATTAGCAATTGTCTAGGTTATCTGTTGTTGCTGTCTTTACTGGCTTGCTGTTTTCATTGTTTTGTTT CTTTTGTTATATATCGTTGTAAGCCTAGTCCTTCTTGGACTATAATGTAAACTCTTCTATTTCCATGAGAAACTTTCTCT CATGGTTTTATCTATAATATTTCTCTTTTTTTAAAAAATAAATATTTTCAATATATTTTAGTCTATAATTGCTTTTATGT TTAGCCTCACTGATATTTAAGGTCTGGATCCGCCCCTGGCCGTGACAGCTTCTTCTTCACCGCGCCACAGTTCCTTTTCT CCGCCGAACAATCCCCTCTCCGGCGACCTGTTCTGTTACAGTGTGAGTTTCCCTCGTTCCCTCATTTGCTCTGAATCATC TAACCATTTCAGTACTGCCCCCTTGCACAAGATTGAGCCAGTCCTTTTGTTAGTGTTCTTGTATTGTTTTCTGATTTCTT CATTGTTTCTGATATACTAATGTTTATTATTAGCATTACTACTGGAATACTAGTTGTTTGGTATTGCTATATAATTGTTA ATTGATATTTAGAGGTATATGATGATTTGCAGCACTGATATTTTGAATGTGTCATGTTTTTTCCATTGATATTTAGAATG TCTCAAGTTGATGGATCAAAATTTATCATGACTCATGAACCTAAGATTTGGATATTTGGCAAGTTTATGCATAGTTTTAA CTTGTTCTTATAGCTATTGTTGGATGATTAGGTTAGTTTTTAATGTTATTAGTGTGTGTTCATCATTATTAGAGTTTTGT AAGTATCTTTTTTGCATGTGAGGTGAACTCGAGTTTACGATTCGAGTTTACCCCCTCCACGAGTTTATATTAACACTCTA GTTTGACAACCTTGTAAAGAAGTATCCAAAAAATCAGATACAAAAGTCATGTTCGTATCAGGTTTTCAAAGTTATTCAAA ACAGAAGAAAATAGAGAGGAACTAACCTTGTGCCGATACTGTGTTTTCCTAGATAGGAGAATCAAAACTAGTTGTCTTAG AAACTAGATTATAACCTTTAATTGGGGCATTGATAGATAGATTGTCCCTGTGTTTCATGGCAAGCGTCCCTCTAGCCTCT ATTTTTTTGGTTCCTCCATACTTTCCGCCTGGCAGTCTGCTTTCTACTACATAGTTGCAGCTTTTGCAAGAAAAAAATTG TTCATTTTCCCGAGGGTTTGCTATTCCAAAATTAATTCCTCAATCCAACCTAAGGCTCTCTCTTGTTTGATTTCCATAGT TGTACTTTTATTTCTCAACCTAGCTCTTCCCTTTGTCTCATATGAAACCACTATAGATTTTGGAATTTATATGGGTACAT AAAAGGACTGATAACAAACTGATAATCCAATATAAATTTGGTACTTTTGGTGATTCTGTCAAGCAGTATTGAATGTAAAA TGTGAGTTTGAAGTTGTTACGGATATGAGCTGGGCTTACCTTTTTCCTGTGTTTCTAAGAAGTTATGATTTTGGTTTGCT TGTCATATATGATGATTGGAAGCTCCTTTTGTCTTTCTAAGCAAATTTTAATTTTTGTATGGCTGACAATTTTTTAGGTG TGAATTATTCACCTGCTAGTTCTAGTAGCTCCCGATTCACCTACAGAAAGTTCTACTTCCTCCATTTTCATTGCAGTGTT GTTAAATATCGGCCATGGCGTTTTTCTATGGCGGGTTTTCAACATACCGCCACAAAAAGTGTGTGGCGGGCCATGGCAGC CGCCATGCACATGGCGGTTGCGGAAATTCCCCAAATTGTTTGGGGAAAATAAACTGTACAAAGGGCCCATGGATTTTTAT GGCCCAAGTCCAAATTTGAGGTTCTAATCCCCCAAATTCAGAATTGGAACCCTAATTCCACCCAATCTCACTCAATATCT CTCACCTTCACTACTCCCATAGCTGCTGCCAGACCATCGGCGACCACCACTCCGGTCTCCGGCCACCGCGTTTCTGCTCC AATCAAGCTCTCAGGTACCATTTTTCTTGTCTGTTTCTGAGTCCTCTGTTTTCACTTTACACTACCCTCTCTCATCTCCC AAAGGCTTGTGTCTTTTCTCTTAAACCCCCGTTCTTCTCCTCTGTTACTGTTTGGTTACAAGTTACAACCCTCATGTTCT TCTCCTTTGTTTAAAGACTCAAGTCTGTTTTCTTTCCCCTTTTTAGTGCTGGTGCGTGTTCCTCTGTTTTGCAATGGCAA GGGGAAGTGGTCGACCTTCATCAAAAGCTGCTGCTCCTTCCTCTTTTTAGGATGTAATATTGAGACTTAATATCTATCTA GTATCTAATATCTATTGAACTTTTGTATGAGATTTCGCTACTATATCTATGATATTGAGCCTATATTTGATGATATAAGT TGTTACTAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTTTTTTTAATGTGTGTATGTATAAT TGTACATATAATATATATGTTCTATCTAATGAAATGCAGGTTCATAGAGGAATTGATCCAATATGATTCTTCTCAAAGAC ATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAAAAGGCATGACAACATTAGAAGGGCAGAA TAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAGCTTTGGGGGGATGAGTGTGATGTTTTTG ATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAATAACCTCTTACTAAGGGCAGGCAAGAGA GGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAAACATGAGTGAGATTCATTGGATTCCTGA CCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCACGCATCTTCCCTCCAAATCCATAAATGA AATTTGCACTTGTCACAACTCTGATCTACATCAGAATTCAGGTTGGACCTAACTCTATCTTAAAAGCTAGTTCAGCTAAA CTACACCTACCTTTGTTTATGCGCTTTTGTCACAATGCTTAGGCAATCTTGTATATTGAGGATCATTTAGTTTGTTGGTT GTAGTAGCCTTATTATTAGTTTAAAGTGTTGTTCCTATGGGTGACACTGTTAAAATGCACAGGGTAGTTTACATGGTTTA AACTCCCTCATTATCAAAGTGGCATAAACAGGGTAAAGCAGTTTCAAAGAAAAACTAGGAAGCCATTTTAGGAAATGAAA CCCAGGGTAGCAGAGTTCACAATATGACAGATAAAGAAGTTTATTGTTTATGGTTCACTAAACTTTGATGATATGCTTAT AAACATGTATAATTATAATAAATATAGCTTGTTTAACAAGTGACTGATTTGAATTTTAGTTTTAATAATTTGTCTTTTTA TAGTTTCTTCTGAAAATATATATTTTTGCAATGTATCACGCATTTCCTGATATCTTTATACTAATTATGAAACTAAGATA TTTAGACTAGGAACTACTTCGAATTTGATTAGAAATTCACATACACATTCTGAACATCGAATTCTCATTATGTGTTAACA AATCACAATTGATACAGAAGTGTCTGTTACTGTTATCAAATAAGAGGGTTCTGACATAATTTTTGTTAGCCTACGTCATT ATCTAGTTACTATTAGTCAACAATGCAATAGAGCTTTCAAAAATGAAGAATAGTTGAATGGATTTCAGGTCAAAGTTTGT GGTGCCGATGTTTTGTATTAGTTCTTCATATTAGATGTTATTATGGCGGCATGGTTATAGGTCAAAAGAAACATCTATGG CGGCAAGGCCTCTTTATTTCAGTCCAAAAGAAACGCAAAAAGCACAGGATAAAGGTTGTAGTAACATTCATTTATTGAGT ACTAGGAAGGAATGATTAAGTGCTTCATATTAAAATTTGACTATCTTTCACACCATATAATATTTCCAAATAATATACTC CAACGGCTTTACTATTTGTCATGGGCATGTAGCCTCTATTATCTTGGTTGAAACACAAGCAAAGTTGATTTAATTCATTC ATATTAGCCTAGTCTCACCCTAAGTGATTAGGTCTAAACGGATATAATTCTCATTTTGTGACAACTCTGTACTTTTTGCA TGCAGGTTCAGGGCATGTATGATGCAATCAAGGGATAAAGTTTAAGATTTGCTGTCCTCATTATATATATAATATTACAG AATAACTTTAAGATTTGGTCAAGAGAGCCTGGGAAGTTCTAGAATTAAAGAAAACCGTATGAATCTTACTTTTCCTACAG TTGTATCCTATCTAGTTGAAAACTAAGAGAGTTAGAACCGTTAAATATACATATGAAATCAAGGTGCTGCTTCAACTAAC ATTACACATTACTAGAACAGTTGACAAAAATAACAAATTGTAAGATGAAAGAACAAACTTGAAGTTGATACATTTGGGGA TGAATTTGTGCACATGTATGCTTTTACAAATTAACGCAATACAATTTACTTTTTAGGGCCTAAATTATTCATAAAATACA TTTAAAAAATCAGTACCTTATGGTTTTTTATGAATTTCCTCATTAACTGAGAAAGTAAAAGATTATGTATTTTTAACAGA AGCTTAGAAAGGAAATTTCTGTTTCAGTTTCAAGAGACCAGGCTAGAATTTTCAATAACTCTGTGAACTACGAGAAAAAT GTCTTCCTGTTGATATCTGTAGCAAGACAAGCACAACAAGGAAAACAGAAATATATGCGTACATCACTGTGATTAGTTGC AAAAATAGTATAGTTTTAGACCCTTGTTTCTTAAAACAGGGCATTTTGAATGTAAAATATACACAAGTAGACATGCAGGT AGATAAATGCCGCAACATACTAACAAATTTTCACATGATTCGGTCAAGAGAAAAAAGTTCATTCTATCAAGAAGAATTAA CAATTTTTTTGTCCCTCACAGCATAGAAGTTAGGAAAAGGATAGTGAGGGAAGTTTACTAATTTTCTTTTGAAGAATAAT CGCATCATGATCATTTTACATAAATTTGTTGAACTAGTACAATAATATTGGAAAAGCGGGATTTTGGCACGTTGAGCTTA ACGTGAAATCGTGTAGAGTTCAATAGAGATCCAAACACACTTAGAATAATCGTGGCTGGGATTATGGGCAACCTGTAAAA TCAAACTTGCAATATATTTGTTTCAAACAATAAGAACTTAGTTCCAAACAAGCTAACCTTCAAGATGGATTGTAAACTAA GAAACTTTGATATACTAAAATTTGAAGTTTATATCTGTGACTATGCTTCCCACTAAAGTTACGACTCACTTTGGAAAATC AAAGTGACTTGTCGATCCATTTTGTTGGCTTTATGCCAAACAATAAGAAAACTTGATGATGATGCTTCATCATGCAAGGT TCCATTGTAAGATTATGCCAGTGTATGTATAAAGTCCTAATCTCAAGATTATTAAGACCCTGGGAAACTGTTGTGGATAA CTAAAAATAAAAGTCCAACTTTATTTCTACCAAAGTCAATATACATTGGTTATGAAATTGGAAAAAAAAAGAGAAATTAA ACCTCCTGTCTGCAACTACAAGTGAAAGAGAGATAACTATACTAAACTAGCTCTTGTCAAAAGCAGCATATAGAGGCTAA TGCTTGTGATTCTAGTCTTGTACATAAGATTACTATAAATAGTTGATCTCATGGCTTTTGCTTCTGTGTATAGATATAGT CTGTGTGTGCTGCAAGAGTTCTTCTCATCAAGCATTCATCTTCACCAATGTCTTGACAAGCTTCCTCTATGCTGTTCATT TCCTCTTCCAAAACCTTCAAGTATATAAGAGCAAATATTATTTATAATGGATACAGAAAAGTGTATGCACATATAATTGC AGAAGTTCTGAAAAAAAAAATGATATAATTAATGAAACTAACTCACCCCATGTTGATTACTTTTTGAAATTACAGAGGAA GAAGCAGGGCCAAGTCTGGTTGCATATGTGAGGGTTAAGAAAAGGAAGAAGAAGGTTGCCATGAAAACTCTGAGCTTATA CCACATTTTCATTCTTTGCTTCCTACAACAGCCAAGTGCCAAATGCTATAAGTGGAATCAATTTATAGGCAGTGTTTGGA ATTAAAAAGGGCAGGAATGTAATTTAAGTCCTTTGAGAATTGTACAAAAGTAATTTAAACTATAACAAAATCTATCAACA AG
CDS sequence (LotjaGi2g1v0283100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAAAAGGCATGAC AACATTAGAAGGGCAGAATAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAGCTTTGGGGGG ATGAGTGTGATGTTTTTGATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAATAACCTCTTA CTAAGGGCAGGCAAGAGAGGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAAACATGAGTGA GATTCATTGGATTCCTGACCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCACGCATCTTCC CTCCAAATCCATAA
Protein sequence (LotjaGi2g1v0283100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFDLGDIICLTNGIFSYQRNNLL LRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTYIQEHVVSPHSRIFPPNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
Gene3D | 2 | 108 | 107 | 1.4E-21 | – | |
SUPERFAMILY | 4 | 113 | 110 | 1.58E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0283100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…