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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0283100 |
Transcript ID | LotjaGi2g1v0283100.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | SOSS complex subunit B like; TAIR: AT5G63690.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog; TrEMBL-Plants: tr|C6T2C8|C6T2C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0283100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75552558..75556695) extracted from Lotus japonicus Gifu genome v1.2.
AAACAAACTCGCAAGTTCACACCTCGTCCACCGAGTTGAGATAGCAACTAGGAATAGACTTTTTTGGCCCTCATAAAATA GTGAAGTATTGAATTTAATCCATCTTTAATTTTTCATTAATTTTGGTCTCTTCATCCATTCTTTGGCATTCTATGGCGGC TTAAACCGTCACTAACATATTTTATCGCGGTTATAATCTATTTTATTCATTTTTAAAAAAAAAAAAAAAAAAAACCCTCA ATCATCGTACCCTCTCTGCCGACTCACGCACGCTCTGTCGCTCTCGGCCTCTCTCTGCTCTCCAGCCTCTCCTTCATTCG AAGCTCTCTCTCTCTGTTCGTGCCTCTCCTCTCCATCGAACTGATCGAAGCTCTCTGCCTCAGTGCCTCTCAACTGCACG CACGCGACGACCGACGACGGTTTGGAAATTCACTTCTGTTCAGCAAAAAAGATGAGATGTAATGATAGCTAAATTTTCTT TCCTGAATTTTCTTTCTCACTTCCCTGAATTTTCAGATTTTGGAAATGGCTTAGATGCAAAGCAAATGGGTTTTCTTACT CTTATTATGAGTGGCATACAAACCCAGTTATCTGTTTAGAAGGGTTGTCATAGTTAGCAAGGTACACAAATTGATGTTGG GATGCTTGCATTCATATGGGTGGCAATTACAAGTTGATTAGCAATTGTCTAGGTTATCTGTTGTTGCTGTCTTTACTGGC TTGCTGTTTTCATTGTTTTGTTTCTTTTGTTATATATCGTTGTAAGCCTAGTCCTTCTTGGACTATAATGTAAACTCTTC TATTTCCATGAGAAACTTTCTCTCATGGTTTTATCTATAATATTTCTCTTTTTTTAAAAAATAAATATTTTCAATATATT TTAGTCTATAATTGCTTTTATGTTTAGCCTCACTGATATTTAAGGTCTGGATCCGCCCCTGGCCGTGACAGCTTCTTCTT CACCGCGCCACAGTTCCTTTTCTCCGCCGAACAATCCCCTCTCCGGCGACCTGTTCTGTTACAGTGTGAGTTTCCCTCGT TCCCTCATTTGCTCTGAATCATCTAACCATTTCAGTACTGCCCCCTTGCACAAGATTGAGCCAGTCCTTTTGTTAGTGTT CTTGTATTGTTTTCTGATTTCTTCATTGTTTCTGATATACTAATGTTTATTATTAGCATTACTACTGGAATACTAGTTGT TTGGTATTGCTATATAATTGTTAATTGATATTTAGAGGTATATGATGATTTGCAGCACTGATATTTTGAATGTGTCATGT TTTTTCCATTGATATTTAGAATGTCTCAAGTTGATGGATCAAAATTTATCATGACTCATGAACCTAAGATTTGGATATTT GGCAAGTTTATGCATAGTTTTAACTTGTTCTTATAGCTATTGTTGGATGATTAGGTTAGTTTTTAATGTTATTAGTGTGT GTTCATCATTATTAGAGTTTTGTAAGTATCTTTTTTGCATGTGAGGTGAACTCGAGTTTACGATTCGAGTTTACCCCCTC CACGAGTTTATATTAACACTCTAGTTTGACAACCTTGTAAAGAAGTATCCAAAAAATCAGATACAAAAGTCATGTTCGTA TCAGGTTTTCAAAGTTATTCAAAACAGAAGAAAATAGAGAGGAACTAACCTTGTGCCGATACTGTGTTTTCCTAGATAGG AGAATCAAAACTAGTTGTCTTAGAAACTAGATTATAACCTTTAATTGGGGCATTGATAGATAGATTGTCCCTGTGTTTCA TGGCAAGCGTCCCTCTAGCCTCTATTTTTTTGGTTCCTCCATACTTTCCGCCTGGCAGTCTGCTTTCTACTACATAGTTG CAGCTTTTGCAAGAAAAAAATTGTTCATTTTCCCGAGGGTTTGCTATTCCAAAATTAATTCCTCAATCCAACCTAAGGCT CTCTCTTGTTTGATTTCCATAGTTGTACTTTTATTTCTCAACCTAGCTCTTCCCTTTGTCTCATATGAAACCACTATAGA TTTTGGAATTTATATGGGTACATAAAAGGACTGATAACAAACTGATAATCCAATATAAATTTGGTACTTTTGGTGATTCT GTCAAGCAGTATTGAATGTAAAATGTGAGTTTGAAGTTGTTACGGATATGAGCTGGGCTTACCTTTTTCCTGTGTTTCTA AGAAGTTATGATTTTGGTTTGCTTGTCATATATGATGATTGGAAGCTCCTTTTGTCTTTCTAAGCAAATTTTAATTTTTG TATGGCTGACAATTTTTTAGGTGTGAATTATTCACCTGCTAGTTCTAGTAGCTCCCGATTCACCTACAGAAAGTTCTACT TCCTCCATTTTCATTGCAGTGTTGTTAAATATCGGCCATGGCGTTTTTCTATGGCGGGTTTTCAACATACCGCCACAAAA AGTGTGTGGCGGGCCATGGCAGCCGCCATGCACATGGCGGTTGCGGAAATTCCCCAAATTGTTTGGGGAAAATAAACTGT ACAAAGGGCCCATGGATTTTTATGGCCCAAGTCCAAATTTGAGGTTCTAATCCCCCAAATTCAGAATTGGAACCCTAATT CCACCCAATCTCACTCAATATCTCTCACCTTCACTACTCCCATAGCTGCTGCCAGACCATCGGCGACCACCACTCCGGTC TCCGGCCACCGCGTTTCTGCTCCAATCAAGCTCTCAGGTACCATTTTTCTTGTCTGTTTCTGAGTCCTCTGTTTTCACTT TACACTACCCTCTCTCATCTCCCAAAGGCTTGTGTCTTTTCTCTTAAACCCCCGTTCTTCTCCTCTGTTACTGTTTGGTT ACAAGTTACAACCCTCATGTTCTTCTCCTTTGTTTAAAGACTCAAGTCTGTTTTCTTTCCCCTTTTTAGTGCTGGTGCGT GTTCCTCTGTTTTGCAATGGCAAGGGGAAGTGGTCGACCTTCATCAAAAGCTGCTGCTCCTTCCTCTTTTTAGGATGTAA TATTGAGACTTAATATCTATCTAGTATCTAATATCTATTGAACTTTTGTATGAGATTTCGCTACTATATCTATGATATTG AGCCTATATTTGATGATATAAGTTGTTACTAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTT TTTTTAATGTGTGTATGTATAATTGTACATATAATATATATGTTCTATCTAATGAAATGCAGGTTCATAGAGGAATTGAT CCAATATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAAAAGGC ATGACAACATTAGAAGGGCAGAATAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAGCTTTG GGGGGATGAGTGTGATGTTTTTGATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAATAACC TCTTACTAAGGGCAGGCAAGAGAGGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAAACATG AGTGAGATTCATTGGATTCCTGACCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCACGCAT CTTCCCTCCAAATCCATAAATGAAATTTGCACTTGTCACAACTCTGATCTACATCAGAATTCAGGTTGGACCTAACTCTA TCTTAAAAGCTAGTTCAGCTAAACTACACCTACCTTTGTTTATGCGCTTTTGTCACAATGCTTAGGCAATCTTGTATATT GAGGATCATTTAGTTTGTTGGTTGTAGTAGCCTTATTATTAGTTTAAAGTGTTGTTCCTATGGGTGACACTGTTAAAATG CACAGGGTAGTTTACATGGTTTAAACTCCCTCATTATCAAAGTGGCATAAACAGGGTAAAGCAGTTTCAAAGAAAAACTA GGAAGCCATTTTAGGAAATGAAACCCAGGGTAGCAGAGTTCACAATATGACAGATAAAGAAGTTTATTGTTTATGGTTCA CTAAACTTTGATGATATGCTTATAAACATGTATAATTATAATAAATATAGCTTGTTTAACAAGTGACTGATTTGAATTTT AGTTTTAATAATTTGTCTTTTTATAGTTTCTTCTGAAAATATATATTTTTGCAATGTA
CDS sequence (LotjaGi2g1v0283100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAAAAGGCATGAC AACATTAGAAGGGCAGAATAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAGCTTTGGGGGG ATGAGTGTGATGTTTTTGATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAATAACCTCTTA CTAAGGGCAGGCAAGAGAGGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAAACATGAGTGA GATTCATTGGATTCCTGACCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCACGCATCTTCC CTCCAAATCCATAA
Protein sequence (LotjaGi2g1v0283100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFDLGDIICLTNGIFSYQRNNLL LRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTYIQEHVVSPHSRIFPPNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
Gene3D | 2 | 108 | 107 | 1.4E-21 | – | |
SUPERFAMILY | 4 | 113 | 110 | 1.58E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0283100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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