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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0283100 |
| Transcript ID | LotjaGi2g1v0283100.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SOSS complex subunit B like; TAIR: AT5G63690.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog; TrEMBL-Plants: tr|C6T2C8|C6T2C8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0283100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75552645..75556460) extracted from Lotus japonicus Gifu genome v1.2.
CCTCAATCATCGTACCCTCTCTGCCGACTCACGCACGCTCTGTCGCTCTCGGCCTCTCTCTGCTCTCCAGCCTCTCCTTC ATTCGAAGCTCTCTCTCTCTGTTCGTGCCTCTCCTCTCCATCGAACTGATCGAAGCTCTCTGCCTCAGTGCCTCTCAACT GCACGCACGCGACGACCGACGACGGTTTGGAAATTCACTTCTGTTCAGCAAAAAAGATGAGATGTAATGATAGCTAAATT TTCTTTCCTGAATTTTCTTTCTCACTTCCCTGAATTTTCAGATTTTGGAAATGGCTTAGATGCAAAGCAAATGGGTTTTC TTACTCTTATTATGAGTGGCATACAAACCCAGTTATCTGTTTAGAAGGGTTGTCATAGTTAGCAAGGTACACAAATTGAT GTTGGGATGCTTGCATTCATATGGGTGGCAATTACAAGTTGATTAGCAATTGTCTAGGTTATCTGTTGTTGCTGTCTTTA CTGGCTTGCTGTTTTCATTGTTTTGTTTCTTTTGTTATATATCGTTGTAAGCCTAGTCCTTCTTGGACTATAATGTAAAC TCTTCTATTTCCATGAGAAACTTTCTCTCATGGTTTTATCTATAATATTTCTCTTTTTTTAAAAAATAAATATTTTCAAT ATATTTTAGTCTATAATTGCTTTTATGTTTAGCCTCACTGATATTTAAGGTCTGGATCCGCCCCTGGCCGTGACAGCTTC TTCTTCACCGCGCCACAGTTCCTTTTCTCCGCCGAACAATCCCCTCTCCGGCGACCTGTTCTGTTACAGTGTGAGTTTCC CTCGTTCCCTCATTTGCTCTGAATCATCTAACCATTTCAGTACTGCCCCCTTGCACAAGATTGAGCCAGTCCTTTTGTTA GTGTTCTTGTATTGTTTTCTGATTTCTTCATTGTTTCTGATATACTAATGTTTATTATTAGCATTACTACTGGAATACTA GTTGTTTGGTATTGCTATATAATTGTTAATTGATATTTAGAGGTATATGATGATTTGCAGCACTGATATTTTGAATGTGT CATGTTTTTTCCATTGATATTTAGAATGTCTCAAGTTGATGGATCAAAATTTATCATGACTCATGAACCTAAGATTTGGA TATTTGGCAAGTTTATGCATAGTTTTAACTTGTTCTTATAGCTATTGTTGGATGATTAGGTTAGTTTTTAATGTTATTAG TGTGTGTTCATCATTATTAGAGTTTTGTAAGTATCTTTTTTGCATGTGAGGTGAACTCGAGTTTACGATTCGAGTTTACC CCCTCCACGAGTTTATATTAACACTCTAGTTTGACAACCTTGTAAAGAAGTATCCAAAAAATCAGATACAAAAGTCATGT TCGTATCAGGTTTTCAAAGTTATTCAAAACAGAAGAAAATAGAGAGGAACTAACCTTGTGCCGATACTGTGTTTTCCTAG ATAGGAGAATCAAAACTAGTTGTCTTAGAAACTAGATTATAACCTTTAATTGGGGCATTGATAGATAGATTGTCCCTGTG TTTCATGGCAAGCGTCCCTCTAGCCTCTATTTTTTTGGTTCCTCCATACTTTCCGCCTGGCAGTCTGCTTTCTACTACAT AGTTGCAGCTTTTGCAAGAAAAAAATTGTTCATTTTCCCGAGGGTTTGCTATTCCAAAATTAATTCCTCAATCCAACCTA AGGCTCTCTCTTGTTTGATTTCCATAGTTGTACTTTTATTTCTCAACCTAGCTCTTCCCTTTGTCTCATATGAAACCACT ATAGATTTTGGAATTTATATGGGTACATAAAAGGACTGATAACAAACTGATAATCCAATATAAATTTGGTACTTTTGGTG ATTCTGTCAAGCAGTATTGAATGTAAAATGTGAGTTTGAAGTTGTTACGGATATGAGCTGGGCTTACCTTTTTCCTGTGT TTCTAAGAAGTTATGATTTTGGTTTGCTTGTCATATATGATGATTGGAAGCTCCTTTTGTCTTTCTAAGCAAATTTTAAT TTTTGTATGGCTGACAATTTTTTAGGTGTGAATTATTCACCTGCTAGTTCTAGTAGCTCCCGATTCACCTACAGAAAGTT CTACTTCCTCCATTTTCATTGCAGTGTTGTTAAATATCGGCCATGGCGTTTTTCTATGGCGGGTTTTCAACATACCGCCA CAAAAAGTGTGTGGCGGGCCATGGCAGCCGCCATGCACATGGCGGTTGCGGAAATTCCCCAAATTGTTTGGGGAAAATAA ACTGTACAAAGGGCCCATGGATTTTTATGGCCCAAGTCCAAATTTGAGGTTCTAATCCCCCAAATTCAGAATTGGAACCC TAATTCCACCCAATCTCACTCAATATCTCTCACCTTCACTACTCCCATAGCTGCTGCCAGACCATCGGCGACCACCACTC CGGTCTCCGGCCACCGCGTTTCTGCTCCAATCAAGCTCTCAGGTACCATTTTTCTTGTCTGTTTCTGAGTCCTCTGTTTT CACTTTACACTACCCTCTCTCATCTCCCAAAGGCTTGTGTCTTTTCTCTTAAACCCCCGTTCTTCTCCTCTGTTACTGTT TGGTTACAAGTTACAACCCTCATGTTCTTCTCCTTTGTTTAAAGACTCAAGTCTGTTTTCTTTCCCCTTTTTAGTGCTGG TGCGTGTTCCTCTGTTTTGCAATGGCAAGGGGAAGTGGTCGACCTTCATCAAAAGCTGCTGCTCCTTCCTCTTTTTAGGA TGTAATATTGAGACTTAATATCTATCTAGTATCTAATATCTATTGAACTTTTGTATGAGATTTCGCTACTATATCTATGA TATTGAGCCTATATTTGATGATATAAGTTGTTACTAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGC AGGTTTTTTTAATGTGTGTATGTATAATTGTACATATAATATATATGTTCTATCTAATGAAATGCAGGTTCATAGAGGAA TTGATCCAATATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAA AAGGCATGACAACATTAGAAGGGCAGAATAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAG CTTTGGGGGGATGAGTGTGATGTTTTTGATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAA TAACCTCTTACTAAGGGCAGGCAAGAGAGGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAA ACATGAGTGAGATTCATTGGATTCCTGACCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCA CGCATCTTCCCTCCAAATCCATAAATGAAATTTGCACTTGTCACAACTCTGATCTACATCAGAATTCAGGTTGGACCTAA CTCTATCTTAAAAGCTAGTTCAGCTAAACTACACCTACCTTTGTTTATGCGCTTTTGTCACAATGCTTAGGCAATCTTGT ATATTGAGGATCATTTAGTTTGTTGGTTGTAGTAGCCTTATTATTAGTTTAAAGTGTTGTTCCTATGGGTGACACTGTTA AAATGCACAGGGTAGTTTACATGGTTTAAACTCCCTCATTATCAAAGTGGCATAAACAGGGTAAAGCAGTTTCAAAGAAA AACTAGGAAGCCATTTTAGGAAATGAAACCCAGGGTAGCAGAGTTCACAATATGACAGATAAAGAAGTTTATTGTTTATG GTTCACTAAACTTTGATGATATGCTTATAAACATGTATAATTATAATAAATATAGC
CDS sequence (LotjaGi2g1v0283100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTTCTCAAAGACATTGTGCCTGCAGCTCAGAACAACATAGACACGAAATTCATAGTTTTGGAAAAAGGCATGAC AACATTAGAAGGGCAGAATAAGGTGTGCTTGGCGCTTGTAGCTGATGAGACTGCAGCTGTTCATTTTCAGCTTTGGGGGG ATGAGTGTGATGTTTTTGATTTAGGTGACATAATTTGTTTGACCAATGGCATCTTTTCCTACCAGCGCAATAACCTCTTA CTAAGGGCAGGCAAGAGAGGGAAGCTAGTGAAGATAGGAGAGTTTACAATGTCATATGTTGAGACACCAAACATGAGTGA GATTCATTGGATTCCTGACCCAAATAATTCTAGGACGTATATTCAGGAGCATGTTGTATCTCCCCACTCACGCATCTTCC CTCCAAATCCATAA
Protein sequence (LotjaGi2g1v0283100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILLKDIVPAAQNNIDTKFIVLEKGMTTLEGQNKVCLALVADETAAVHFQLWGDECDVFDLGDIICLTNGIFSYQRNNLL LRAGKRGKLVKIGEFTMSYVETPNMSEIHWIPDPNNSRTYIQEHVVSPHSRIFPPNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
| PANTHER | 1 | 135 | 135 | 6.4E-55 | – | |
| Gene3D | 2 | 108 | 107 | 1.4E-21 | – | |
| SUPERFAMILY | 4 | 113 | 110 | 1.58E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0283100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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