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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0290500 |
| Transcript ID | LotjaGi2g1v0290500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BSD domain protein; TAIR: AT1G26300.1 BSD domain-containing protein; Swiss-Prot: sp|Q9D5V6|SYAP1_MOUSE Synapse-associated protein 1; TrEMBL-Plants: tr|I1J654|I1J654_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0290500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76395001..76399494) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGCTTCATTTTTCCAATCTCTTTCTTGTGTTCCTCTTCTTACTCTTGCAATCTTCTTCAACCTTTCTCTCTGACTTT CTTTCTACTGTGACACGAGCAATGGAGGACTTCTGGAAGAGAGCCAAGACATTCGCGGAGGAGGCGGCGAAGAAATCGCA AGCCCTCACCAGCTCCTCCGCCACCGCCCGGATCGCCGATCTCGTCTCCGAAACCGCCAAGAAATCCAAGGATTTCGCCG CCGAGGCCTCCAAACATGCCGACATCATCAAAACCGCCGCCCTCCGCCAAGCGGATCAGATCAAGTCGTTCTCCGACACC ATCTCCATCCCTCCCCAACTCTCCGCCATTGCCGCTGCTGCTACCGCTACGGCACCACCACAACCCTCCGTTTCTGAGGA AGACCTTGAAAAGTTCTGCGTCACCGATGATCTCAGATCCTTCGTCAAAGGGCTCACTTCTACCACCTTCACAAACTTTA CCCTCAGTTCTGGTAATTTCCGAGAATTTTGTTCATCGTTTCACTGTGATTTCTTTGTGATTCTCTGTAAAAACTGAAAA CAAAGGCGAAATGATTGGTAGTAAAATTAGTAATCATTCTGTGTTAGGATCATAGACCTATGAACAATGCAATGATTGAA CAGTTTTGATTAGAAAATGTTTTGGTTGGTTTGATTGAGTGAGTGCATTTGGAAATGTAGATGAATCTGAGGGTTCTAAT GTGCCCACTTCGGGCTCGAATGTTCGGAAGGATCTTAATGAGTTCCAGGAGAAGCATGCCACTCTTGTTTTAACTACTGT CAAGGTGAATACAGAGCTTACTATTTTTATTTAATCTAGTGTGTTTTTATATTGGGTGTGATTGGTTTGTAATGCATTTC GCTTCACATGTTTACTTTAGTTATGTGCCAAGGGCATGAGGAGTAAGGCTGCAAGAGATAGCATCCATATTTTAGTATTA GTGTGTTGAGGTGATTGCTTTATAATGCATTCAACTTCACATGTTTACTTTAGAAATATGTAAAGGCATGTGTAAGTGTG ACTCGTGCAAGTTGCATTTTATTTTCTGGGGAACAAACAACAATGATGCATGATTAAGAAATGCATGTACGCTTTGCTTT GATATCCTTTTTTGTATGCTTGCTTTGATATCCTTTTTTCCTTCTAATTCATTGTTTTTATGGTTGATGGTGGTGTTGCA TTCATATATACAGGAGTTGTATCATATGAGAATGGTCTCTCTATGTGATAATGGTAGGAATAAATCGCGACTGTTTGTAA TCATGAATGGTGAAGTTTTAAACATTAAATCACTTGACTATTTTTAAAAGTTGCATGGCATTTTTAAGTGGTCACGTGAC CATTAAGTAATTTTTTATCTTGACCATTCATGGTCCCGCTGTCCCTTTTTACATGTCGTGTTTGAGTTTGATTTCTTTTC ATCCTCTGTTGTTTTTTTATTGAGATGATAATAATTCATTAAAAGTACCACCTGCTTATATTGCCATAGTATATCGACAT TTACCAGCAGTAATGCTAAATTGCTTATATAATGTATGGAATATGGATTGAAAAAACATGTATGTATTTGAAAATGCAAG TTATCACAGGATGGCTAGTTACAATTATATACTTTAATTGTTATTCTTTTACAGGAAATTTCAAAGTTGAGATATGAACT ATGTCCGCGTGCTATGAAAGAAAGACACTTTTGGAAGATATATTTCATACTTGTCAACACCCACGTGGCTCCGTAAGCAT TATATCTTTTTAACAAGTGATGTACTGTGTTAGATTTGTTAATGAAGGTGCAGAATTTTGCTATTATATGTGATATTTTT GTTTAAAATGTTCTCTGACAGTTTCTGTATTCTTTGAAGAAATACTATTCACATAAAAGAGGAAGTACAAGAAAGAAAAT AGAAAATATACTAGTGATCTCTGCTGGCTTTTGCTATGTACTTATGTATGCTAAAATCAAGTTGTTCTGTAACAAAGTAA AGGAATACAAGTAAAAAGGAAAGATAGAAAATGTTGTGGAACAGCACATTTTAATGATTCTGTTGTTCTACACATTGTTT GGTTCTGAAATTTATGCAACAATGGAAATAATATATAAAATATTAAGAAATTTTCTTGTTAATCATTTTATATGCAATTT CATATCAGGATGTATTCATATTCTTCTCTTAAGTCAGGATTCTAGATAGACAGAAAAAGTATTAGATGATCTCAATAGGT CAGATTTCAAAGTGATAATTCTGGCTTGTGTTTCTAGATTCCTGGCCTTGTATGTTAAAAGAGACGAGATGGCATTAGGA AACTTTTGTAGTATGAAAAAGAGCATTTCTGGTTTCGAATCTGGTTGCACAAGTATTAGACAGAGATCCTAATGTTGACA ATAAAGCTAACTAGCTAAGATTTCTTCTACCTGTGATGCAATTAAATTAAATTTGATAGGGGCCTAGGCTAGTAATTATC TAGGAGAATATTTGAGCAAGATATGCTGAGTGAGTGTGTTCAGGGAATGAATTATTTACTTCTGGAATTGTGGTATATTA TGAAAAGACTGTGACCCTGTAGATATCATTTTTATGTATTAGAGTTGGCACTTGGGTTCTAAATAGTTTGAGCTGCCTAA ATAATTTGAGGGCAGTGTTTTAACATTTTTAAGTTAGCATCATCCAATAACTATGATGTTACAATCAGGTATGAGAAGCG ATATATGGAGGAGGTTCAGCTCAGAGAAGCAGCAAAGCAGAATGTGGATACTGAGGTAGAGCAAACTGCTGTTAGTGGAG GATCTGGAAAGGCTGAAGCAACAGGGAAGAATTTGAAGAGTAAATCTTCCAATTCATCCTCTGAGCAGGACTTGGATTCA TTTCTTCTTGGAGACCTTGAAGACAGTGATGGAGGTCCAGGTATATTACTCACAGTTTGTTTAGATTTCAATACAGAAAC ATGCAGTTTTTGTATGTTGAATCAGTAACTGAAATTTTGCGCATTATGTGGGAATTATGTGCAAAAGCATGAATACTTAA CATTCTTAAGATTCCTAGAAAAGAACTAACTAGATTTTGAAATCTCAGGGCAGACATTGTCTTTGATAGTTAACTAAGAT TTGTCTGTCATAATCGCACCATGGTCTTGTCATTGTGCCTCTCTACTTTTAGATTGATTATCTTTTACATCTTTCAGATG ATGGTGAGGGCAGCTTTGATGATGATTTTGACAAGATTGGCAATTCTGTAAGTGCTTTTTATCTGGATCTACTTTGGATT TCTGTTTTCCTTTCATTTACCATTCTTTAGCCACCTTAATGTTGTTTGAGCCCAAGCAAACAAGACACTTTCTATGTGTT TGTTAAAATAAAATGGGATAATAATCTATGTGTATTCTGTAAAACTCATTTTGTTATTAGTAAATATAAGAGGGGCGATA AAAATAGAAGGAGTATCAGAAGGGCAGCATGACATTTGGCACATGGGTAGAACAGAATGTACAGAATGTTCTTTTTTCTT CAGTTCCACCTTTTTCAGTGAAACCAAAATGTACTAGCTACTTCAATGTTGATTGAGAAGGAGTATTTTGAGATATTTGT AAAGGTTCATTTGCATAGTAGACCTCCCTCAGCATTAATAATAAACTTTAGCTGCACACATCTTTTCTTGATATGCTGAA TTTGATTTTTATCACTTCATGGGTGCTTTCAGGATGTTGAAGATGAGAAGCATGTGAAGAAAACATCTTCTGCAACAGTT TAGTATGTGCAATTACTTGTGTTTGAGACTCTAGTGAAAATGAAGTTTGCTGCTTGAAACTAACTGAGATATCACTGAAT GGTAAAAAGATAAAAGGTTGCAGCAGGTCTGGAGTTCAAGAATGATGGCTGTGACAATGTGTAGATTTGGTGAGCTGGTT AGGAAAACTCAAGTTATTCGTTATTGTTTATTTGTTCATCGTAGTGCCCTATATAGTGGCGCATATCGTTAGATAAACAA GTTGGCGATGTACAGTTTACCTTATTTGTTGATGTGTTATCAGTTACCAAATTCTTACATATGAAGTTTTAACTAGTGAA TAGCGCGAGCATAAAAACTCGGCCTTTGTTGCAAGAACTTGATGGTTTTGTGTGGATACTAGTATTATAGTATTTAATCC GTCTAATAATTTACATGTAATATTGATTTGATATAGTATTCACATAATACTGTGTATTTCTCAAAAGTGGGTACGTGTTT ACTTTACAAACAAGAAATCCCGTGAATAGAACTCCATTTTTTTTTTGGTTACATGGGAAGATAAAACAAACTAGACTAGC AATAGAACTCCATTAGATTCAATTCTATCAGTTTCCACATTCCAGGTTCCAAACAAAGCTAAAAGCTGAGATGAGGTCAT AGGCACACCATAGAATGAAAGCAGGCCTAATAGTTCATAACATCAAATGTAGAAAACTTATGAACTTCTCTGTGCATAGA GTCTATTAAATCAG
CDS sequence (LotjaGi2g1v0290500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACTTCTGGAAGAGAGCCAAGACATTCGCGGAGGAGGCGGCGAAGAAATCGCAAGCCCTCACCAGCTCCTCCGC CACCGCCCGGATCGCCGATCTCGTCTCCGAAACCGCCAAGAAATCCAAGGATTTCGCCGCCGAGGCCTCCAAACATGCCG ACATCATCAAAACCGCCGCCCTCCGCCAAGCGGATCAGATCAAGTCGTTCTCCGACACCATCTCCATCCCTCCCCAACTC TCCGCCATTGCCGCTGCTGCTACCGCTACGGCACCACCACAACCCTCCGTTTCTGAGGAAGACCTTGAAAAGTTCTGCGT CACCGATGATCTCAGATCCTTCGTCAAAGGGCTCACTTCTACCACCTTCACAAACTTTACCCTCAGTTCTGATGAATCTG AGGGTTCTAATGTGCCCACTTCGGGCTCGAATGTTCGGAAGGATCTTAATGAGTTCCAGGAGAAGCATGCCACTCTTGTT TTAACTACTGTCAAGGAAATTTCAAAGTTGAGATATGAACTATGTCCGCGTGCTATGAAAGAAAGACACTTTTGGAAGAT ATATTTCATACTTGTCAACACCCACGTGGCTCCGTATGAGAAGCGATATATGGAGGAGGTTCAGCTCAGAGAAGCAGCAA AGCAGAATGTGGATACTGAGGTAGAGCAAACTGCTGTTAGTGGAGGATCTGGAAAGGCTGAAGCAACAGGGAAGAATTTG AAGAGTAAATCTTCCAATTCATCCTCTGAGCAGGACTTGGATTCATTTCTTCTTGGAGACCTTGAAGACAGTGATGGAGG TCCAGATGATGGTGAGGGCAGCTTTGATGATGATTTTGACAAGATTGGCAATTCTGATGTTGAAGATGAGAAGCATGTGA AGAAAACATCTTCTGCAACAGTTTAG
Protein sequence (LotjaGi2g1v0290500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDFWKRAKTFAEEAAKKSQALTSSSATARIADLVSETAKKSKDFAAEASKHADIIKTAALRQADQIKSFSDTISIPPQL SAIAAAATATAPPQPSVSEEDLEKFCVTDDLRSFVKGLTSTTFTNFTLSSDESEGSNVPTSGSNVRKDLNEFQEKHATLV LTTVKEISKLRYELCPRAMKERHFWKIYFILVNTHVAPYEKRYMEEVQLREAAKQNVDTEVEQTAVSGGSGKAEATGKNL KSKSSNSSSEQDLDSFLLGDLEDSDGGPDDGEGSFDDDFDKIGNSDVEDEKHVKKTSSATV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 295 | 295 | 2.4E-139 | – | |
| PANTHER | 1 | 295 | 295 | 2.4E-139 | – | |
| SUPERFAMILY | 107 | 202 | 96 | 4.18E-16 | – | |
| Gene3D | 124 | 203 | 80 | 2.6E-7 | ||
| SMART | 144 | 196 | 53 | 8.8E-12 | ||
| Pfam | 148 | 196 | 49 | 1.7E-10 | ||
| ProSiteProfiles | 151 | 196 | 46 | 11.405 | ||
| MobiDBLite | 215 | 301 | 87 | - | – | |
| MobiDBLite | 237 | 254 | 18 | - | – | |
| MobiDBLite | 256 | 276 | 21 | - | – | |
| MobiDBLite | 277 | 301 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0290500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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