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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0291500 |
| Transcript ID | LotjaGi2g1v0291500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS box transcription factor; TAIR: AT3G02310.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1; TrEMBL-Plants: tr|K7K7W6|K7K7W6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0291500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76549062..76556353) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTTTTGGAGGATAAAAATAGGATCTGCCTCTTTGCTGAGATTGCTTTCAAATGCTTTATAAAAGGGTTCATCTCCA CCACTCCTAGCATATACAAATAGGTTTACCATGCCTAGCTACTAAAACACACAGTCGACAGCTCATACCATGCATAACCT TACATAAAGAAGAGGTAGAAGGAAATTTTGCAGAAAATAGCTGTACAATATTAAGTCTGCAAACTGATGTTTTTGTTCTG AAAAAGCAATTAATGTTTAATGTTTATTTGTGAAAAGATACTATTATAAAAGTAGTGATGGGTAGGGGAAAGGTGGAGCT GAAGAGGATTGAGAACAAGATAAACCGCCAAGTGACATTTGCAAAGAGAAGGAATGGGTTGCTCAAGAAGGCTTATGAGC TCTCTATTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGAAAACTCTATGAGTTCTGCAGCAGCTCC AGGTACCTATTTGCTTTGTATTTTGGAATTTCGGTTTCTGGGTCTGGCTTGATTTTCTTTTTTTCTTTCATGGGATGCAT AAAGTTTATATCTTGCTGGTAATAACTGGTTGTTTTGTGATCTTGATTTCCTTGGGTGAGTTTGTGAGTCTCATGATTTT TTTTTTTTTTGCTTTTCTTCTTCTCTCTAGTCTTCTATGCCCTGATCCATATGTAGGGCTGCGCTTGACTAGATTTATTT TGACTTTCCTGGTATTTTAGTTTCTTTGTTGTTTTCCTCATCCTGCTTTGTAAAAATTATTAGATGGCAGTCATAGTTAT TGTAGATCATTTTACTTCAAAATCTATCTTAATTAATTTGATTAGTTTGTAGTGGATTTGTAATGGTTCAATTTCAGTTG TGGTTTTAACCCTTAATAAAGTTGAGCAATATTTTATACTACTTAATATATCATGCTAATAATCTAACAAATTTATTTTA TTTTGTTTAGAAGCTGATCTGAGATGAATGGTTTTGTAAATGTCTCCATTTTCTGAGCTAAAAAATGAGCTTTTGTTTAG TTTTTTATGGGAAAATAAAGAACCCACTTTAGGGTAGAGAGGGTGGGGTGTATATGGTCTCCTTCTGAAATTCAAAATTT TCTTGTAATTAATTGTTCGAAGGTTTCATATCTTCCAATTAGCATTTACTAACTCGATTCAAGGGCTAATATTAACTAAT TAATTTAGTGGCTTATATACAAAATTAATACAGTAATTAACAAACTTTTTTTTTGCTTTGTTGAGTACTTAATTTTACTT AGTTTTGACAAAAAACAATTGATAGTTGATTTACTCCTGTGTTATGGCAATAATAATGCAGGATTATAACGCGTAATCTT TATTTTAGGAGCATTTTCTGACCAAAGATTGTATTATGAAGAGAAACACTGACATTCTTTTGATAACTATAATCTTAACC TTAACCCCCAGGTTTTCTTCGTTGATAGCTACTACCTAGATACCTGGTTTTGATTAGATACTCTCCCAGTCTCCCATATA TATATGTCAGAACTCATCAAAAGAGAAAAATAGAAAAGGAATTAAGAAATTAAGAAATTACACATGAATACAAAATATCA GATTTCAGTACCACAAATGCTTTTAATACGAAAAGACAAATAATATTACTATATTATTTATGCTTGAAGTGTCATGAAGT AGCTTTTAGGTTACATCAGTTTCAGCTTCTTTACTGTTACAACAGGATTCTCTCTCTGTTGTGAAATTTTGTGATTTTAC GAGTCATTATGTTTGATCAACATTCATATATAGTTGCTATATTCTGAGGCATTTGCCTCTATATAAGGTTTGGCTAAATC AAAATCATATACTTCATAAACAGATGTTTTAACTTTTGAGTCCAATGAGAGTTAGAGTTAGAGTAGTGCTTGCAGATTAA TCCTACATGTAAGCAACCATGCATTAGAGAAGCTATGAAGTATAGGAGTTAAGGGTAGGTCTAGAAGAAGTGAATCACAA TCTGAGAAAAGGGAGAGCAACACCATGGTGCAGGAATCATTTTTCAGGAATAGGATAAGACAGACAACAGACAAGCCCTG TGTGTTCGTTTCCAACATGTCTTGTTCTACTTCTGTACGGCCTATATATCTTGCCTTGCATTAAACTGTAGTTCATAGGT TTTGCTGGCAATGGATGATGCTTGATCTTTCTTAAGAAGTGGTTTTTGAAACTTAGAATAAGAACATTGGTTTCACATTA AAACTGCAAGAGATTGTTATAAGGAAATGAGCTTTTTTTTCTTTCCCAAAAGCTCAATTTGTCATAAAGAAATTAACTTT TTGGAGTAGTGAAAAAAGTACGTTAATTAAGGTATTCTTGGAGCAACAAAAATCTGCATGCCATTTGCCATTACTTGTCT TTTACATTAAGATTTGAGAAAAAGGATGATGCATCGACGGTGTAAAGTTTTTTACACCGTCAACCAATCGGATTTTAAGG ATGTGTCACGTCAATTAATGAAATTAAATAAAAAGAGAGATTTTCTCACATCTTTGAAATCTGGTTGGTTGACGGTTTAA AAAAACATTACACCATCGGTGCATAGAAATTAAACTCTTAAGATTTTAGTATACTTTTATCAAATAATTTACAATTTTAA TGTTTTGTGTAATATAATGCACTACATATTCAATTATGTAAACCAACACATGTCGACTCATTTGCTAAGGATATACTATT TTCTTTAAGAAAGCAACCTATGATCTTAGAAGCATAGTATGATGATGATTGAAACCGAACTTACCCAAACTTTTTGTAAC TAAGAATACAAGATACCTAATAAAAATTTGTTTATGAAATACACTTTTTGATAAGTGAAATATATTATTAATAAAGAGTA CAAGGTACCCCAACCAAATAAAAGAAACTGAAATTGTGAATAGGATGTCTAAGCATAGCAAAATAAGTACAATAGAGCAA GAAAAAGAATCTACTCAATCCTAGCTTTAATATGACAATTCAGTAGCCCCAATAGTACCCCCTAAGTCCCTAACACTTCA TGTGAATGTAATAGCACCTTATTGATTACAATTTTCATTCACAAACTGGTATGGTTGGATGCTCATGGCTGGGCATTTCA TTAATCAAAACTGTAATTATTTTCATGTAAGTCTAGCGCCCCTTAGCTATACTATTAATCCATTTTGGCTTTTTCCAAAT AAAATCATTAAGTATGAAGGCAATTGATCACACATAAATCATGTTTTAACTACTAATATTATTATATGTTATTTACAATA TATTTTTTATGTATTTAAATTAGTTTGCAATTTTTTAACTAGTGAACCAAATTTTTCTTAATTCATGATAGAAAAAGTCT ATATAAGATTTTGGTGCAGGTTCTCCTGCTTCCTTGTCTCCCCAACAACATAATAATTCTGAATTGTATGAAACTATCCA CTTAAATATTTAGGAAGTAGACACCTATGAATAAGTCTTGCGAGATATATTTTTTAAGAAAATTCAATCTAAAGATGAAT TTATTGAAAAAATAAGGAAAATACATAAATTGAACTTTAATACTGGCATTCAAATTATGTATTTTCCTTAATATAAGATT CAGTTGTAACCTTGATCATAAGGCATTGAATTCTCTAAATACAACAGCTAGGTAAGACTCAGTTGTAACCTCATCAATTT CTTTTTGTGCCTCGTTTATCCATTTGTTTTCAAACATCTCTCCCCAACCAGAACTAAATAATAATGCACACAAGAACATT TTTAAAAACCGAGACGAGAAACTTTACTAGGATTTATTTGTTTGCTTTATTTACTGATTTGATTTGTATGAACTTAATTG CTTTATCCTTGCATTTCCTTTTTCTTGAAGTAAAATATACAGCTATGTACACTCATTATACATTTGTTACGTTTAGCATG CCCAAGACACTTGAACGGTACCAAAAATGCAGTTATGGAGCCTTGGAAGTAAACCACCAATCTGAAATGGAGACACAGGT ATTCATTTTTCTTGTTTATCCATATCCTTGAATGTGTTTTTAAGAGGATAAAGAAGCAAAAACATGTGAGACTCATCCAA AAATTATGCTGGAGCCTGGAACAGTTAACATATATAATTAATGCCCTTGTGTAGAGGCGCTACCAAGAGTATCTGAAGCT GAAATCAAAAGTTGAGGGACTACAGAGAACACAGAGGTAGAATACTGGAGCACACTTTAGAATCCTTGACAAAATGAGCT AGCAGTGACCCAAGATAAAAGTGTGAGCAATTGTTGGTTGTATATTAATAAATTATGTCTGCATCCTGTAGAAACCTCCT TGGGGAAGAATTGGAGCACTTGGATATTAAGGACCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCTCTGAAGCAAATCA GGTCTAACAAGGTATGCATATTTGGTATCTGACTGTGATGAACTAACTGGTTATATGTCATGTTGTATGAATATTCTTCT TCTTATTGTTGATGGGGAAGCTGACAAGTTTTGCTCAACATTTTTTTTCTTATATAAGGAAGCCACGGTGGCCGCCTATA TGAATTTGATATCCGTTTGGGTTCATGAATTTTATTTTTCTAGCTGGAAAGGAGAACTCTAGAAATAGGGTTCCCAAAGA AAGTTAATACAAGCAAGTTACAAACTGCAAGTCACAAACTTTTTTCACTAAACATTATTCGGTGTAAAGTGGGTTTGTGA GTTGAGTTTTGAAACTTGAAAGGGAGAGAATAAAAAGGAAGACTTATGGTTGTTTGGGTTTTCTTTAGCGGGTTTTGGCC GAGGTTTTTAGTTGGTCGGGTGGTCTTTTTGCCAGGGGTCTTTGAATGTTGGGGTTTTCTTTTGTTGCTTTGTGGCGTGC AGCGGTATTTTTCCGCTTGAGAGGTGCTACTCTCATTTTGATCTATATATATTATCCTTTATCTTTCAAAATAAAAGGAA GACTTATGGAAAGACCTCTCATTGTTTGAGAGATTTTAAGAAAGGATGAAGAGTTTAGGGTATTTCTAAAAACACTCCAT AACACTTTCGAAACCCTCTTTTAATTATATGTAATAGTTCTCTTAAATTGGATGGTTTTGAGAATTCAGAACTCTCAAAC AAAGGAATGACGTACATCTTCCCCTTCTCTGGCCTTCCTCTTCCCTTACCCTTAAAGTCTTTCTCTCACCTCTCCTAAAA ACTCCCAAACAAGCCTAAGTTATAATAACACTACATATTTTTCGAAGTTTGATTTTGGAGGGGATCGAGGGAAGGGAATT AAAAGGCTTATGAGAAGCTCTCCCATTGTTTAGTTTTTTTATAAGGGGGCTAAGGTATGGAGAGTTTTTGAAAATACCCC AAATCTCCTTTGAGACCCTCCTCTACTTATTTTTTTGAAAAGAGAATTATTATTACAATAAAGGAAAGCAATAAGGGAAC AACTCTCCCAAATGAGATAAAAAGAAGGAAACCCAAACAGGGGGAACAAAACATTCTCCTTCCCTCCCTCAAAAACTCAT AAAAGATATGATTGAAAGAGAATTTCAGAGGGGTCTTGAAGGGTTATTAGAACTACCTCAAACTCTTCCCTCCTTTTTAA ATCTTTTAAGCTAGGGAAAGATTTCTCATAAGCCTCTCATTTCCCTTCCCCCTCCAAAACTAAACTCAAACACACTCTTA GTTGGTTGGGAGTTTATGTCCTTAAATCTCATAACTAAGAGGAATGCTCTCTAGTACTCTGTTTTAATAAATGATCTGAT TTTGTTTGAGAAAGACATGTTGTTGCTTCAGTTGCTTTGAGTCTTGTACATCATAAGATTTTGCACTAGATTACTATATG ATTTGAAGTTTGAACCATAGTTTCTTATTTATCTGTTCCTTGTCTACAGACACAACAAATGCTTGATCAACTCTCCGATT TGCAGAGAAAGGTAAAACCTTGTCTAGACTTACTACATCATCTTCAATTAATACAATATCATTTTCTTATAGACTGCCAA ACTCTGTTTTTGATCCAACACAGGAGGAGATGCTACTCGAAACTAATAATATCCTGAGGAACAAGGTATCAAACTAAACT ATTTCCAAGCAATTTTAATATGATACATATATTATAGAAGCTTAGACTGTTAGAGGCTGTTGAGACTTGAGATTTCATCT ATTACACAAAGAATTTCAAGTTTTCAAGTTTCAACAAATACTTAGTTTTTTTCTCTGTAATTTGCTCTGAGCTTCACCTT ACATTTTGGGATTGCTTGGTTTACTATTGAAATTTTCTGCTACCCCATTTAATGAAGTCCAAATTGTCCTTGTGAATTTC ACAGTTGGAGGAAATTGATGTAGCTATTCAAACAGCATGGGAAGGTAGAGAGCAAAATGCTCCCTACAGCTACCCTCCTC AATCAGAGGGATACTATGAGACACCACATTGCAATAGTACATTGAGAATTGGGTAATTTCCTTTTCCTGAAATGCAGAAA ATTTGAAGTTAAGGTTTTAAATTGTGTTTGTAGTTGTGATCACATTTTGTATAGTTCTTAGTGCTAATGCGGTCGCAATT GCAGTCACAATGCTAATCGCAAAGATATCTAAAACCTTGCCGACTACAATTTGAAACCTTATGTTAAGCACATTAATTGC ATGTGTATTTTGTAAGAAACTGATTCCTCATTCTTCTGTGCAGCTATGATCCTTCAGTGGTAAATAATGAAGCAGGAGGA GGTGAAGGAACCTCAGCCCAGACTACCAATCAATTCATGCATGGATGGGTTACCTGAATTTCTAACTTAATTAATTCATA ATTCTCATAAAATGATGCATTTGTAGAGATCTTGTGGCCATGAAGAACAGGGCTATATAATAAATGTGTCATGCCACTAA AAAAAGAAAACAAAAGCTTTGCTTTAAATTTCCAAATAAAACATCCCATCCAACTTAACCATCTGGATCAAATTCAGATG AGGTTCTATGGTACTTACTATTTAATTTGCTTATTGTCTTTTATTTGGTTTACTTTTCCTTTGCTTGTGTGTAGAATATT CATTTCAAAGGTGAGTGTTGCAGCAAATGAATGCCCATTTACTATTTTGTTTATAATTGTAAAGTGTATCTTTAAGCTTG ACATGGTACTTAAATTGTAATTAAAGTGCATCTTTGATTTGTAGTTTCCATTTAAATTAATTAAGTAATTGACGATAAAA TTAGTGTTTTTAAACTTTTGGCTTCGTTATGGACTCAGTTGAGATATTAATTTCACGACTAACATTTTTTTTAAACAATT TCACGACTAACG
CDS sequence (LotjaGi2g1v0291500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGCCAAGTGACATTTGCAAAGAGAAGGAATGG GTTGCTCAAGAAGGCTTATGAGCTCTCTATTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGAAAAC TCTATGAGTTCTGCAGCAGCTCCAGCATGCCCAAGACACTTGAACGGTACCAAAAATGCAGTTATGGAGCCTTGGAAGTA AACCACCAATCTGAAATGGAGACACAGAGGCGCTACCAAGAGTATCTGAAGCTGAAATCAAAAGTTGAGGGACTACAGAG AACACAGAGAAACCTCCTTGGGGAAGAATTGGAGCACTTGGATATTAAGGACCTTGAGCAGCTTGAACGTCAGCTGGACT CTTCTCTGAAGCAAATCAGGTCTAACAAGACACAACAAATGCTTGATCAACTCTCCGATTTGCAGAGAAAGGAGGAGATG CTACTCGAAACTAATAATATCCTGAGGAACAAGTTGGAGGAAATTGATGTAGCTATTCAAACAGCATGGGAAGGTAGAGA GCAAAATGCTCCCTACAGCTACCCTCCTCAATCAGAGGGATACTATGAGACACCACATTGCAATAGTACATTGAGAATTG GCTATGATCCTTCAGTGGTAAATAATGAAGCAGGAGGAGGTGAAGGAACCTCAGCCCAGACTACCAATCAATTCATGCAT GGATGGGTTACCTGA
Protein sequence (LotjaGi2g1v0291500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSMPKTLERYQKCSYGALEV NHQSEMETQRRYQEYLKLKSKVEGLQRTQRNLLGEELEHLDIKDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLQRKEEM LLETNNILRNKLEEIDVAIQTAWEGREQNAPYSYPPQSEGYYETPHCNSTLRIGYDPSVVNNEAGGGEGTSAQTTNQFMH GWVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 33.543 | ||
| SMART | 1 | 60 | 60 | 5.0E-42 | ||
| PANTHER | 2 | 181 | 180 | 1.3E-94 | – | |
| PANTHER | 2 | 181 | 180 | 1.3E-94 | – | |
| SUPERFAMILY | 2 | 88 | 87 | 7.19E-35 | ||
| CDD | 2 | 78 | 77 | 6.05889E-47 | ||
| PRINTS | 3 | 23 | 21 | 6.6E-33 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 3.6E-26 | ||
| Gene3D | 13 | 100 | 88 | 2.1E-29 | ||
| PRINTS | 23 | 38 | 16 | 6.6E-33 | ||
| PRINTS | 38 | 59 | 22 | 6.6E-33 | ||
| Pfam | 85 | 172 | 88 | 3.9E-25 | ||
| ProSiteProfiles | 88 | 178 | 91 | 15.913 | ||
| Coils | 122 | 145 | 24 | - | – | |
| Coils | 151 | 174 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0291500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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