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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0292200 |
Transcript ID | LotjaGi2g1v0292200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Alpha-1,4-glucan-protein synthase [UDP]-forming]; TAIR: AT3G02230.1 reversibly glycosylated polypeptide 1; Swiss-Prot: sp|Q8RU27|UPTG2_SOLTU Alpha-1,4-glucan-protein synthase [UDP]-forming] 2; TrEMBL-Plants: tr|I3SIM7|I3SIM7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0292200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76661178..76665462) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATCATAGTAGAATAATAATAATAAAAAAAGTGTGAGAAAAAAAATATCAATATTCTTGTTCTTATATAATTCAC ACCCCACAGCAGACAAACACACACATTCTCTCCGCGTTGAACACCATCTCCACTCTCCTCCTTCCTTCAGTTCTCTCTGA ATCTCCTTCAATGGCGACTACCCCATCGGTGCCACTGTTGAAAGATGAGCTTGACATCGTGATCCCCACGATCCGCAACC TTGACTTCTTGGAGATGTGGAGGCCCTTCTTCCAGGGCTACCATCTCATCATCGTTCAGGATGGTGACCCATCGAAGACC ATCAACGTCCCTGAAGGCTTCGATTACGAGCTCTACAACCGCAACGACATCAACAGGATCTTGGGTCCTAAAGCCTCCTG CATCTCCTTCAAGGACTCCGCTTGCCGCTGCTTCGGTTACATGGTGTCGAAGAAGAAGTATGTCTACACCATCGATGATG ACTGCTTTGTAAGTACCCGTTTCGAACTTTTGATATGTTTTCGTTTGGAATGAGTGATTTTGACCTAAAGTCGTTTGCTT TGGACTGTTTTCGTTGATGGGTCGTGAAATTGACTTGATGTTCTGTTTTGTGTTGTGAAGGTTTTGGTTTTGATTTGTCA ATTTTGATCTGTTTTTGTTGAATTGACTTGCTTTGATTGACCCCATTGCAGGGTTTTTGAAATGGGGTTTAGATCTGGGT TTTTGTTAAGGGTTTAAGCTTGGTTTGGATAATTGCATCCTAGAGATAGCTTGATTTTCTCATTGTTCTTTAGTGTGTGT TTGGAATGACTAGTTCTTGTGAGGAATTGGTTTGAATTTTGAAAGTAATTCTTTGGTTGTGAAGGTTTGAAGATTCAGAT TTGGTTTGAGTTTGAAATCAGTGAGTAATTATGAATCCACTCCAATTTGATTGATTTTGAAATTGAATTGACTTGATTTG ATTTGATTTTAGTTTTAATTGTTTAAATTTTAAGACTTGTTTGTTTATCCATTCAAGCTGATATTTGCAGAAAATGAATT CTACTTTGTAGGTGTTCTTTAAGCAGGATTTACATTAGGTTTTTCAAACATGAGATTTGATTTCTGACTTGAATTGAATC GAATCAAATCCAATTGTAATGATTTCAAACACAGCTGGATCTATGATGGCTTTTAAAATTCATTTGGATCTGTTTTTCAT TACCTTTTCATGTAATATATTTTAACTTTTATGCTTTTCAAAATCAACCATTTCTTTTCCGTTGTTTTTGGCTTTATGAA CACAATGATTACCGGTCAAATTTGAAAGTGCATTTTCTTGTCTTATCGTTTCTTTTTCCTGTTCATTCTTTCTAGATCTA CATTTTAAATTTTTAACTAAATGATTGAAATGTCGATTTGATTTGATGATTGCTATCTGTAGATTCTTTTATATTGTGAT CCTGATAACCTGTTGATTCTACTGTGTTCAATGCAAAATTGCAGACTTAGTTTTCTCAATGCTTTCTATTTTCATGTGCA GGTTGCTAAGGACCCATCTGGCAAGGACATCAATGCACTTGAGCAGCACATTAAGAATCTGCTTACTCCATCCACTCCAC ATTTCTTCAACACCCTTTATGATCCTTACAGGGAAGGTGCTGATTTCGTGCGTGGATACCCTTTCAGTCTCCGTGAAGGT GCCCCCACTGCTGTTTCTCATGGCCTTTGGCTCAACATTCCTGACTATGATGCTCCAACACAGCTTGTCAAGCCCCGTGA GAGGAACACCAGGTATGTAGATCCTCATTGTGGCCAGTAGTTAACATAAATACTCTTATTTATAGACATTTACTGAATAA TCGAGTATTTTTTTTCAGGTATGTTGATGCGGTTATGACCATTCCCAAAGGAACATTGTTCCCCATGTGCGGTATGAATC TGGCCTTCGACCGCCAGCTGATTGGACCTGCAATGTACTTTGGACTCATGGGTGATGGCCAGCCTATTGGACGATACGAT GATATGTGGGCTGGGTGGTGCATTAAGGTATATTAATAATGTGTCCCTTTTCTGTTAACCCTTGCCAACCCCTTAAATCA ATGAGTCCAAGACTACCTGTGGGTCTTTTTAATTATAATTGATATTTCTATTAGAATTGCTTAACTTCTGACTTATATGA TGTTTGGTTTATGTTGTCTTGACATTTTTATTAAAAGTTCCAACATATACCTTTTGTTTTTTACTATTTTTTGTTTTCAA GAATTTGGAAAGTAATTGTCAAAGCATTAGCCTCTGATCATCTTTAGTTGTTTGAAAAACAGAAATGTTACTCCTATCCT TGTTTTCTACTTCGACTCTTCCACAGTTCTTCATTCTTCAATTTCAATCCCTTACCCTTACTTATTTTGGCCCCGTTTGG AAGAGTTTATTTGAACTTATCTTATAGCATAAGCCCTTAGGCAAGTATTTGAACTTATGTAAACAGCTTATGACCTACTC ATAAGCTCTTTTGTGCTTATTTTCTTAAGTCCTTCAGATCAGCTTATGAACCTGTGATAAACGTTTATTGTATAAGTGTT TAATCAAGCTGTTTACCCAAACATACCCTTATTCTTTAAGGGAATATGTGATCAAATGCCTCCAATTGTTATAAATGGAT GAACCACCTTTCTAGTTGCAATTTTTTTTTTCAAAGCTATTAACTCCTATGTTGACAGACAACTCATTTATGCTGCATTG ATGAATTTACAGGTTATCTGTGACCATTTGGGCCTGGGAGTCAAGACTGGTCTTCCATACATATGGCACAGCAAAGCAAG CAACCCGTTTGTTAACCTCAAGAAGGAGTACAAAGGCATCTTCTGGCAAGAAGAGATCATTCCATTTTTCCAATCTGCTA CCCTTCCAAAAGACTGCACCTCTGTTCAAAAGTGCTACATTGAACTCTCCAAGCAAGTCAAGGAGAAGCTTGGCCCTGTT GATCCCTATTTCAACAAGCTAGGCGATGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACAACTCGTCTGAAGA GGTCTCTTCAAAGCCTAATGGGGCTGCTGCCAAGTGAACAACTTTGTAGTTGCAGGGCGTAGTTTACAAATGGAGTTAGT TCCATCTCAGTTTTAATTTATCATCTTGGTCATAGATATTTGTTGTCATTATTATTTTTATTGATATTGCTAGACTCTGC AGAGTGCCCAACAATTTTATTGATATTTATGTCGTTATTATATTGATATTATTATCCTTATTGTATTTCAGTATAACTTT TCACCATTACTGGTGGAAGCCTTGACATTTCATCTACCTTCGTGGATGAATTGCTTTCTATATTCATGCAGAATTTTGAA GAATAGAGACTGTGTTAGACGACTAGCTAAGGTGATAATCTTGAATCCTTAAACTCATCTGAAGTGGATGACCAAATACT TAGATCACCAAGTTATAGATATTGTATGGCAAATGCACTGACCCTGGAAAGTTCATTAACCGAACTCAAACGTCGAAAGA TCATGAGTCTTTGGAGTCTATCTAATAAGTGCTCTTTAGTCGGTGTATCCGATAGTAAAATAGTGAATCATTCAAAATAT TAAAATTTTAACCTAACATAAGGTTGTCCTGCTTAATGAGTCTATGTCAATGTCAGTTTTGCTGCATAGCTCAGATGAAT TGAAGTTGAAGCCTGGACAAAAAAACTGTGGGCCTTCTTAACTGTGCCACCCTCTATTTTCAAATTTTGGTCACCAAATT TTGTTTGTACTTTGTCGTGAACGTTTTAATTCCAATCAATTTTTGAGAAATTTTACAGCTGCAAGTGTCGGTGACTCTGT GTGGCCCTCAACCTTGGCATTTTGTGTATTGTGAATGTTTTGAATTCAAAACTGGTGGAAGGGACAGCAACAGAAGGACG AGTGAGAAATGAGGGAAAATAGATAAAGGGCCTTTATCTAAACAATTAAAGGCTCATCATAGTGAAGAGTACTCATGAGT CATGACCGTGGGGTTATAATTGTTTAAATTTTGAAATCACTTACTTTTCTTTTTCCCTAGGCTAAGATTGTTATGCCACA GGATTTGGCAACCAGAATCTATGAAAGAAAGCAACAAGTCCATCCATGTGCATACTGTATTTCATCTCAATTATCATGTA GCAATGAAGGAAATTAATGAGGATTACTTTTATCACATGAGAATTATGACATTTGTCAGGTCCAATTTCACATGTATAAT TGTCCATGGTTATTACTATTTCTTTCCATATGTTAAGTGAACCCA
CDS sequence (LotjaGi2g1v0292200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTACCCCATCGGTGCCACTGTTGAAAGATGAGCTTGACATCGTGATCCCCACGATCCGCAACCTTGACTTCTT GGAGATGTGGAGGCCCTTCTTCCAGGGCTACCATCTCATCATCGTTCAGGATGGTGACCCATCGAAGACCATCAACGTCC CTGAAGGCTTCGATTACGAGCTCTACAACCGCAACGACATCAACAGGATCTTGGGTCCTAAAGCCTCCTGCATCTCCTTC AAGGACTCCGCTTGCCGCTGCTTCGGTTACATGGTGTCGAAGAAGAAGTATGTCTACACCATCGATGATGACTGCTTTGT TGCTAAGGACCCATCTGGCAAGGACATCAATGCACTTGAGCAGCACATTAAGAATCTGCTTACTCCATCCACTCCACATT TCTTCAACACCCTTTATGATCCTTACAGGGAAGGTGCTGATTTCGTGCGTGGATACCCTTTCAGTCTCCGTGAAGGTGCC CCCACTGCTGTTTCTCATGGCCTTTGGCTCAACATTCCTGACTATGATGCTCCAACACAGCTTGTCAAGCCCCGTGAGAG GAACACCAGGTATGTTGATGCGGTTATGACCATTCCCAAAGGAACATTGTTCCCCATGTGCGGTATGAATCTGGCCTTCG ACCGCCAGCTGATTGGACCTGCAATGTACTTTGGACTCATGGGTGATGGCCAGCCTATTGGACGATACGATGATATGTGG GCTGGGTGGTGCATTAAGGTTATCTGTGACCATTTGGGCCTGGGAGTCAAGACTGGTCTTCCATACATATGGCACAGCAA AGCAAGCAACCCGTTTGTTAACCTCAAGAAGGAGTACAAAGGCATCTTCTGGCAAGAAGAGATCATTCCATTTTTCCAAT CTGCTACCCTTCCAAAAGACTGCACCTCTGTTCAAAAGTGCTACATTGAACTCTCCAAGCAAGTCAAGGAGAAGCTTGGC CCTGTTGATCCCTATTTCAACAAGCTAGGCGATGCTATGGTCACCTGGATTGAAGCTTGGGATGAGCTTAACAACTCGTC TGAAGAGGTCTCTTCAAAGCCTAATGGGGCTGCTGCCAAGTGA
Protein sequence (LotjaGi2g1v0292200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTPSVPLLKDELDIVIPTIRNLDFLEMWRPFFQGYHLIIVQDGDPSKTINVPEGFDYELYNRNDINRILGPKASCISF KDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKDINALEQHIKNLLTPSTPHFFNTLYDPYREGADFVRGYPFSLREGA PTAVSHGLWLNIPDYDAPTQLVKPRERNTRYVDAVMTIPKGTLFPMCGMNLAFDRQLIGPAMYFGLMGDGQPIGRYDDMW AGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQSATLPKDCTSVQKCYIELSKQVKEKLG PVDPYFNKLGDAMVTWIEAWDELNNSSEEVSSKPNGAAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 4 | 348 | 345 | 8.7E-202 | ||
PANTHER | 6 | 351 | 346 | 1.7E-242 | – | |
PANTHER | 6 | 351 | 346 | 1.7E-242 | ||
Pfam | 10 | 344 | 335 | 3.6E-179 | ||
SUPERFAMILY | 35 | 243 | 209 | 3.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Intramolecular transferase activity | Catalysis of the transfer of a functional group from one position to another within a single molecule. | ||
Biological process | Plant-type cell wall organization or biogenesis | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. |
Expression pattern of LotjaGi2g1v0292200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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