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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0294000 |
| Transcript ID | LotjaGi2g1v0294000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SPIRAL1; TAIR: AT1G26355.1 SPIRAL1-like1; Swiss-Prot: sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1; TrEMBL-Plants: tr|I3SXF8|I3SXF8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0294000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76879991..76883014) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAACAACTTTGTTTATGCACTTTAATAATAAATTATATATTGAAAAAGTTAGAATTAATTTTAAAAAATGAATTTA TTCATGTATGAATTTTAAAAGTGAGGGGATGGCCTATTTATAACGCATACATCTCTCTTTTCTCCTCCGCCTTGGCCCTT GCGTTGTTTTTCAGATCTGTTCCTTCCAAAGCCACAGGTAACTCTCTCTTCCTCTTCCATTTCCAATTAGGGTTTCTTGA TCATCCATTCGCTTCGATTTCGATTCACAATTCTGCACTTTTTCTTCTGGATCTGGAACCTCCTGTGTGCAATTCGCATT TTGTTTGATTTATATGAGATCGTTCTCCATTGTTCAGATCTATTTCCAGTTTCCAATTTTTGTTGTATTAGGTCGAACTC TGTGTTGAATTAGGGATTTTGAGATGATGAGTTTTCTTGCTTCCGGGGATGAATATTTGCTTTGATTTGATTTGATATGA TTTGCTCTGGTTTGATTTGATTCGTGGTGTTCGCTTATGCTTATACTGTGAAATGTGAATGATGATACAAGGGTAGTTAG ATTAGGGAGTGTAGAGTTTTTTCCCTTGTGCCGCTTTTCGTGCATTGAGTCGGCTAGAGAGTAGAGAGTTACCTTGGTAC CGTGAAAGTCCCTTATCCTGCATGTGTGGGAACTGGGAAGGTTAAGGATTTCTCGAAGAGGAGAAGTAATGAGGAATGGC TCTAAAATGAGAAAGGGGAGGAAAAAAGACATCAAAGGGAGTGGATACGATTGGGTTATTACTTGAAGAGTCTTGTTTTA GTGCATGTGATGTGGTTCGTTTGGACGATTGTATAGGAACGGCTTAGGGAAATGCTACTTTTGGCTAGGCTTTGATAAAG ATTATCGAGAAGGTGCTAGTTAGTGGGCTGGAACTTCTCTGAATCTGCTATTTAGAAATAATGATTGCCTTTTCCGTGCT TTCAAACTAATAGATGGGAAGAAAGGGGAGGGCAAGTGAGGAGGGATTATGTATATGTAATGGAAAATATTTGAAACAAA AAAGATATTCAACGATGGAGGCGGGGGAGTAGGAAGATAGAGATGTCTTTGTTAGTCGTATAGAAAGACAACGGAAAAGG GACATATGTGATATGACTGTTTGTTCCATTTTTTAATCATGTTTGCGGTTTCTGGTGTATTGCTAATTGACTCAAGAATT GAATAATCCACTAAGGTCACAAGTTGAAGTGAACTGGTATTTGTCGTAGAACTTAGAAGTGGTGTCTGCAAAGGTTGACA ATCAAGTTGTTCGTTCAACTTGGTCATTGGCTCTGTGATTTATTGTTATTTTTCCCAGCTTTCTAGTAGTTATGAAAATG GAAAAGTATGTTATACTTGTCTGAATGCAAATGCATTTGGTCAAGTTACAGTTTGTATATGGCATTGATTATTGTCTTAA TGAATATTTAGTTTCTCACAGTTAACTTTGTACTTATGTTTTCTTTGATCCTGTCCACATCCATGTGTAGGCAGAGTTTT CATCTTTCAGAAGGCAGTTGAACAGCATGGGTCGTGGTGTTAGCAGTGGTGGTGGTCAAAGTTCATTGGGTTATCTTTTT GGCAGTGGAGAGGCCCCGAAACCAGCACCAGCACCAGCAACAAATAATGCCCAACCTGAAGTGCAGCCTGTACATAATGA GCCTCCTTCAAAACCAGCTGCTCCTAAAACAATAATTGACCCAAACAAGCCCGCTGGTATAAATAGTAATTCTGCAGATG GCCTGAACACTGGCACCTTCATCACGGTATTATTTGTGCTTGTTATGTTTAATTTCCTCTTTTCCAATTGCTAGAATACT AGTTTAAGCGCTGAACTGCTTTACATAATCATGAATCTTTACATACTATGGGGGATTAAATCTGGTGCACTACACACTTG CAATAGATTTGGTAGTTTGGTATATTTGACCATCCCACGTAAGGTTTAGGTTCTTATATATTATTCAGTAGCCATTTTTG TTTCTATGTGGATAATGTTTTTATTTGCAACTTCATCTATTGAAATTCATAACAAAACTAGATCTGGTTGTTTCAATCTG GTTAGTTCTAATATCTGAAAAGGTGTGGAAATTTTCAAGCACTTGAATAATAAAAATTATAACAAGTTAGATTCTTTCTT TCATTGACACGTTTCACAGTATTGATCTGCCTATCTAATTAGTAAGAATAAATGTACTTAGTTATGCGTTTAACCTTGTA CATCAGTACTAAACTATGTATAGTCTCCATAAAGCTTGAACCTTTCTATCAGTTGATAATTGATTCTTGACATAAGTATG CTTATTTAAATGGTAGTGTGTAGTTAGTTTAGCCACTTTTATATCAATGATAAAGCATCTTCTGGTCTTGTAAAGTGAAT TCAATCCTTCATACAGACAATTGGCACTTTAACATGAGGGGATAATGTTTGGTTGTTGTTGTACTAGACTGATGTCTTGT TAGTTGGAACCAAGATGAAACTTTCCAAAAAACATTCTTAAGAAATAAATGAAGTGGTTTGAATGATATTTTTCTTCTAT TTGTTTTTTCTGCAGGACCGACCCTCAACCAAGGTCCATGCTGCTCCTGGTGGTGGCTCTTCTCTTGGTTACCTCTTTGG TGGGCCTGGGGAAGGAAAATGATACTTTGTTTGCGAGGCTTTTGCTTGAAGAATGTTGTGTGTTGCAATTCAAGTCATTG GAAACATATGGTGTATTATAGTTTATGGGTTGCTGGGATAAGTGATCAAGAGTCTTATATTTTGGACTTGCTAAACATCT GTTTCATAACTGTTTGTCAGAAACAAATATTTCTATTTTTAAGTGAACTTTTGCTTTTTGCACCTGAATTATACTTACGT GATGTGTGGAAACTCTTTTACAATTGACTCTAAAATATGAATCAATTTTGGTAAAAACTTTATGTTAATAGCTTCTTGGT GTTAATTTGACCAAAATTTGATCAATGATTCGATTTTAAAAATTATAATTTGGATAATACCCAG
CDS sequence (LotjaGi2g1v0294000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGTGGTGTTAGCAGTGGTGGTGGTCAAAGTTCATTGGGTTATCTTTTTGGCAGTGGAGAGGCCCCGAAACCAGC ACCAGCACCAGCAACAAATAATGCCCAACCTGAAGTGCAGCCTGTACATAATGAGCCTCCTTCAAAACCAGCTGCTCCTA AAACAATAATTGACCCAAACAAGCCCGCTGGTATAAATAGTAATTCTGCAGATGGCCTGAACACTGGCACCTTCATCACG GACCGACCCTCAACCAAGGTCCATGCTGCTCCTGGTGGTGGCTCTTCTCTTGGTTACCTCTTTGGTGGGCCTGGGGAAGG AAAATGA
Protein sequence (LotjaGi2g1v0294000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGVSSGGGQSSLGYLFGSGEAPKPAPAPATNNAQPEVQPVHNEPPSKPAAPKTIIDPNKPAGINSNSADGLNTGTFIT DRPSTKVHAAPGGGSSLGYLFGGPGEGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 103 | 103 | 4.6E-38 | – | |
| MobiDBLite | 1 | 108 | 108 | - | – | |
| PANTHER | 1 | 103 | 103 | 4.6E-38 | ||
| MobiDBLite | 61 | 82 | 22 | - | – | |
| Coils | 108 | 108 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cortical microtubule organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. |
Expression pattern of LotjaGi2g1v0294000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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