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LotjaGi2g1v0295500.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0295500
Transcript ID	LotjaGi2g1v0295500.1
Lotus japonicus genome version	Gifu v1.2
Description	Chromatin modification-related protein Eaf7; TAIR: AT1G26470.1 chromatin modification-like protein; Swiss-Prot: sp\|Q6CX31\|EAF7_KLULA Chromatin modification-related protein EAF7; TrEMBL-Plants: tr\|A0A0A0KQU2\|A0A0A0KQU2_CUCSA Uncharacterized protein; Found in the gene: LotjaGi2g1v0295500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:77034398..77037219) extracted from Lotus japonicus Gifu genome v1.2.

TGGAGCACTAAATATTTGTTCCCTAAGTTCCCCTTCTCTTATCAATTCATTTTGAAAATTTCATAATTTCTTGTTCCCAA CCTATTTTACAGGCAACAAGTTAATCATCTCAGCCACAGAATAAAACAAAGTACAGTCACTTGGGCTTGCCCAATTACAG TTTTTTTGTTTTGAACCAGCGTTGATCAAAAAAACAAGTTCTGTTTCCATTTTCAAAACCTTTTTAGATCAAACACCAAA ACCCTAACAAACCAACAAAAGAAAAATCAGCAAAGGGTTTCTGGTTAGTTTGAACAAAAGTCTGATCACAGAACGAGAAG ATGAGCAGTGGCGGAGGAGCTGGCAAACCCAAAGAGGAGGAGCAAGATGGCATGTCTGTACACTCTCCTTGCAAGCCTCA TCCTTCTTCTGCTTCCTCTCTCCCCAAGGTATCTCTCTCCCTCTCTCTAATGCTTGAAATTTGAATTTGAAGCTAACCTC GTGATCATGGTGATAGGATCAAGCTCAGGTTGAATTGGAGCTCCAATTGTTGGAAGCTCTTGAAATTTATCCTCCAATGA AACTACAAGGTACCACTCTCTCGCTCTCTCTGTGTTGTTGGTGTTGTTGTTGTTATCGTCGTTGTCGTTGTCGTCGTTCT GAATTTTGCATATATTGAATTTGTACATTAATATTTGATATTCTCAATGAAATAGAAAATGTTTGTTATCATGTGAGGCA ACTTAGGGATTAGGAGAGGGAAACAAGTTTTAATTTTTGGGGAAATGGAAAGTTTATGATGAGTGAGACTGTTTAATCCT GAGATGAATCCCTGCTCTGCTATGAAACGAAACAGAATCGTCGAATTACTGGAGCATTGTATATTCATACATTCTTGGGT TGTTGGCATTTTCTCCTCCGTAGATGATATGATGACTTCAAAATATCTTTTTCTATTTGTTCCTGTACAAAATAATGATG TTCATTTTGTATTTGTTATACATGTGGACACGCCGATTCAAATTTCGTAGATTCATTCATGCACTTAGAATGCTTGACAT GTAAGATATTTGAATGGATGAAATTCTCTTTAATAATAGTGATACTGGATTTCAAGTTTAATAACGAAGGTGATTTTTTT AAGTGGATCATGTTTTACTGGCTATACATTTGTTATCGAGAAACGGGGAGGGGGTCCCATAGAACGCTTACTACATGTGT GTTAATGGATACTAGGCCAAGGCATATACTGCATCATGATTTATGTTGCATGGAGGCACTCTTTCTTTTGAGATTTCCTG AGTGAGAAATGATTAGAAGTATAAGTTTTCTCCCTTTCTGCAATATTTGGTTAGAGTTTGGAGATAACGAATAAAAATAA CACAGTTGAAGATATTTCTCATTTTTGACTCAAAAGTTTTTGTCCAGTTTTGGGCATAAACCTTTCAAGTAAATGCTAAG GAATTTGTGAAGACTACTAGAAGAATGAAGAATTGATCATTTAATACTTTGCAAATGCTTAAGGAGATGATAATACTGCT TGTTTCGTTGTTATTTGAAGAACAATCCGTAGACATGCAAATGTTGCTTGTTTAGTTGTTATTTGATAATTTGCGTTTCT TATTTTATCCAGTTATGTATGGATGATTTCTTCATCCTTGTAAAAGCAATAGTAAGTTGTATAGTTTGACAGTGGTTGTC ACTTGTCAAGGATCAATGTTGATATTTTTTAGTAGGATTCATCAAATTTTATGCTTACGATTAATATGGGTTTTATGAAG GAATACATCGCCACTTTGTCCTTTATGGTCTGATGGATTTTCTCAGGAGGAGGTTTGTTCTTTTTTCCACTCTTAAGCCT ATATTGCTTTTTTTGGTTATCAAGCATGATGTGTTAGACCTATATAATCAGATATATAATCAGAGAACTGCGTATTTTTC ATTCAGATTTGACAGACACTTCTCTTCTGAGGAGGTTCTTCAACTGCTGGATCGGTTCTACAACTTAGAAATGCTGGTAT GTTATCATTAAGTTGTGATTATTCCCATTCTTCATATACCCCCCTCAAATAACATGTTAGTTGATGCCTTAATTGATTTT TGAGATTTGATGAAGTGTGGTGTTTGTCTTTTTTCATCAGAAAACAGATGATGAAGAGATCGAATCGCTTAATCATGAAG AAGATTTCTGCTTGCCTGAGAGTTACTTTGTCAAGGAAGAGCCATGAACAGAAATTTTTGAACCATTGCTCCACCGTTTG ATGTGTAAAGCTGGTTATTCCAATCTCCCATTTCCCTCACCCCGCGTTTTGGATTACATTATGTTTTGGTGGTGTTTCTT TTCTCCTTTATCTCCTAGGTTATGGTAGTTTTAATATCTCGTATATATCTCATGTTTGGTGGAAGTTTTAAATATTCTGC CCGGGTTTGATAGCCTCAGTTTGGGCTACATCATATTGTACTTAACTGCTCTTATTTTGAAATAATGCATCTATATTTAT GTTGTTAATCCTTGAAAAATTGGGATAGCAAGATTCCACATTGCGGGATAGCCGCAAAACGGTGGTCACTAGAGAGGCAG AGGAGAAGGGGAGGAAGAGGCGAAGGATACTTCACATTTTTCTTCCTCTAGGGTTTTTATTGTGGAAATTATAGAGGAGC CCTTAAAACGTTTGAAGTATGAGGTTATTTTCAAGAGGCTTAATCCAGTTTTTGGTCCCCAACCTTTGTTATAAATATGG TTTTAGTCCCTCGCCGGAGTAAAGGTGGGGAGTAGTCCCTAGTTTTTGGTAAAATGATTGGTTTTGGTCCTTCCGGCCGG TTGGGTCAACGCCGGAGCTCCG

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0295500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAGTGGCGGAGGAGCTGGCAAACCCAAAGAGGAGGAGCAAGATGGCATGTCTGTACACTCTCCTTGCAAGCCTCA TCCTTCTTCTGCTTCCTCTCTCCCCAAGGATCAAGCTCAGGTTGAATTGGAGCTCCAATTGTTGGAAGCTCTTGAAATTT ATCCTCCAATGAAACTACAAGGAATACATCGCCACTTTGTCCTTTATGGTCTGATGGATTTTCTCAGGAGGAGATTTGAC AGACACTTCTCTTCTGAGGAGGTTCTTCAACTGCTGGATCGGTTCTACAACTTAGAAATGCTGAAAACAGATGATGAAGA GATCGAATCGCTTAATCATGAAGAAGATTTCTGCTTGCCTGAGAGTTACTTTGTCAAGGAAGAGCCATGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0295500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSGGGAGKPKEEEQDGMSVHSPCKPHPSSASSLPKDQAQVELELQLLEALEIYPPMKLQGIHRHFVLYGLMDFLRRRFD RHFSSEEVLQLLDRFYNLEMLKTDDEEIESLNHEEDFCLPESYFVKEEP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	37	37	-	–
PANTHER	PTHR13581 View details on PTHR13581 Search for proteins/transripts with this domain View external data on PTHR13581	19	126	108	2.0E-37	IPR012423 Show description in modal box View details on IPR012423 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07904 View details on PF07904 Search for proteins/transripts with this domain View external data on PF07904	47	116	70	1.1E-4	IPR012423 Show description in modal box View details on IPR012423 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0043189 View details of GO:0043189 AmiGO InterPro QuickGO	Cellular component	H4/H2A histone acetyltransferase complex	A multisubunit complex that catalyzes the acetylation of histones H4 and H2A.	Subterm of View details of GO:1902562

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0295500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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