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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0306500 |
| Transcript ID | LotjaGi2g1v0306500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein 8A; TAIR: AT1G14340.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3SUK5|I3SUK5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0306500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78007065..78009807) extracted from Lotus japonicus Gifu genome v1.2.
ACTCTTTTTCAGAAACAGTGAGAGTGAGAGTCTTGGTGAATCGCGCTGTTCCAAATTCCAATTCCATCATTTTCTTCGAT CTGAAAATTCTGAACACTGGTGCGTGCATCTGATTCATAACGTATAAATTATTTTTCTTTTCTATTGATATTTCAGTTTC TTATTGTGGTGTATGCACTTTGTTGTGATTTCAGTGTTGAGCTGAAAAACATGGATTCCGGTGGTGGATACACTGTAGAA GTCACAGGTCTCTCACCCAATGCCACTGAAAAAGATGTCCATGACTTCTTTTCTTTCTCTGGTGCCATTCAGCATGTTGA AATTATCAGGCAAGTCTTTATAATCATGTGCTTAATGTGATAATTACTAACTATTGATGATTTTTAATTTTTTTCATATT TTATGGCTTAGCTTAATTTTTTTGCAGTATTTTGAAATTTATGCATTTAAATTATTGGTCACTTCTTTCTTGAGGGATGA GTTTGTAGAGGCTATCCATGATTAACTAGTTGTAAAATGAATCAATTAGGCTAATTAACTGATTATTAAACTAGCTAGAA TAGACTGTTACTGATTTGGTTGGTGATGCGGCATCTGCTAACTAGACTAGCTGTAGTGAATTGTGGAAGCAAGGCAGACT GGCAGAGGTTATTGAACTGAATTGCTGTTGAATTATAAGCCAGTGTTCTATTCATCAACCAGGCTGCGACCGAACCTAAC CCATTTCCAAATGTGTCTGGAGTCTGAACGAGACTTCCTAGCACTTGATTTTTAGGTTAAATAGTTCCTATAGTTTTACC TGATTTGGATTTGGTCCTTCAAGTTGTTTCCCCCCCTAATATTGGTCACTTAGGGTGTGTTTGGGAGTCTTTAGGGGAGG GGAGGGGAGGGTAAGAGAGGGAGACAGGAAGTAAGCCCTTACTTATTTGGAAGTAACAAATTCCCCAAAACCCCCCAATT TGGGGGAACTAAAAAAATATATCTAAAAGATGATTCTTGAGGGGTTTTAGAAATATTCCAAAGCCTTTCCTCATAAGCCA ACCATTTTTCAAAACTCAACTCACAAACACACTCTTAGGGACCAACATTTTAATAATTATTCGTTTAAGACCTATAATTT ACAAGTAAGAACTATATTATGGGCTAAAACCCATGTGAGTGAAAAATATTAGAACGTGTAATTTAGTGGTTGATGCTTAA TTTCAAATGATTGCAAATGCTGGGATGACTATCTTAAAAAATAAATATAGGGACCAAACTCAACATAGGGAGAAACTGTA AAGATTAACTGTGGTCTGGAACCTAATTTTCTTTTTAATTTCTTACTATTTTTGTTCCATAGCTTACCGTTGCGTAATGT ATGATTTTTAGTCTGGAAACAAATTCCATGACACATTTTGGGGATGACTTTAAATACTAATTATGAGTGTTTGAATTAGT TATGAGGCCTATTAGCTTTCCTGATGGGTTTATTTGAATTTTCCTGTTTGAATAAGGGGATTGAGCATTGATGTTTCATG TTTGGTAATATCTGTTGGGTAGCTGAGCTGAAATCACTTGCACTGCCAGAGTTTACCATAATTTGTTTAATATATTCTTT AATTTTTTGCATGGTATTTTGAATTTGATATGGTACTTGTTTATTGTCGAGGGCAGGTCTGGTGATTATGCTTGTACAGC TTATGTTACCTTTAAAGATGCATATTCTCAAGAAACTGCATGCTTGCTCAGTGTAAGTATTTATCTAGCTCATACATAAG ATTGGGGCTCGAATGATCTCGCAGTCTACTGATCATCAAGTTGCCTCAATGATGAGTTTGGTTCTTTGTCCCCTTCTTGA CAATCTGTTATTTTAGGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGGAACTATGAAGATGCATACG ATTTTTGGAACCGGCCCTCTTATAGTCATGAAGAGGAGAGAACTTCAACTGTATGTATCTGTATTTCTTTCAATGGGGCT AATGTTTATGACCTTCTCTGCTCATGGTCTAACATTCAATGTTTTAACTTGTTCTCTTTTAGACACCGCATAGTAATCAA TTTGTTTCCTCTGCTGGAGAAGCAGTCACTGTGGCTCAAGAAGTCGTGAAGACCATGTTAGCAAAAGGATATGTTCTCAG TAAAGATGCATTAACAAAGGCTAAAGACTTTGACGAGTCCCATCAGGTTTCTGCCACTGCAACCGCAAAGGTTTCTGAAC TGAGCCGGAGAATTGGCCTCAGTGAAAAGATATCAGCAGGTGTTGAAGCTGTTAAATATGTGGATCAGATGTATAATGTC TCTGGAACAACCAAGGCAGCTGCTTCCGCGACAGGAAGATCAGTAGCGTCGGCTGCAAGCACTGTGGTCAATAGTAGCTA TTTTTCAAAGGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAAGTTACTTCTGATTTGGGTACTCGTGGTG GCAGGCAGTAAGACTTTGAAACAATTCCTCTCTTGTATATCTTGCATATATGTTTGCATTTGTTAAATAGCTTTTGTAAC TCTGGTTAATAAATTGTTATACTGTTGCAGTAGCTAGTGCATGTAACTAAGAATATATATGTCTAGTGTGCACCTAAACA GATCACCATGAAATTAAACCTTCGCTAGCTCTACTTAACACCACCTACATATAAGATATTTCTATTAATTGCATAAGTTA TTTTCTTTTAAAAGCTAATTTAT
CDS sequence (LotjaGi2g1v0306500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCGGTGGTGGATACACTGTAGAAGTCACAGGTCTCTCACCCAATGCCACTGAAAAAGATGTCCATGACTTCTT TTCTTTCTCTGGTGCCATTCAGCATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACAGCTTATGTTACCTTTAAAG ATGCATATTCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGG AACTATGAAGATGCATACGATTTTTGGAACCGGCCCTCTTATAGTCATGAAGAGGAGAGAACTTCAACTACACCGCATAG TAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTCACTGTGGCTCAAGAAGTCGTGAAGACCATGTTAGCAAAAGGATATG TTCTCAGTAAAGATGCATTAACAAAGGCTAAAGACTTTGACGAGTCCCATCAGGTTTCTGCCACTGCAACCGCAAAGGTT TCTGAACTGAGCCGGAGAATTGGCCTCAGTGAAAAGATATCAGCAGGTGTTGAAGCTGTTAAATATGTGGATCAGATGTA TAATGTCTCTGGAACAACCAAGGCAGCTGCTTCCGCGACAGGAAGATCAGTAGCGTCGGCTGCAAGCACTGTGGTCAATA GTAGCTATTTTTCAAAGGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAAGTTACTTCTGATTTGGGTACT CGTGGTGGCAGGCAGTAA
Protein sequence (LotjaGi2g1v0306500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSGGGYTVEVTGLSPNATEKDVHDFFSFSGAIQHVEIIRSGDYACTAYVTFKDAYSQETACLLSGATILDQRVCITRWG NYEDAYDFWNRPSYSHEEERTSTTPHSNQFVSSAGEAVTVAQEVVKTMLAKGYVLSKDALTKAKDFDESHQVSATATAKV SELSRRIGLSEKISAGVEAVKYVDQMYNVSGTTKAAASATGRSVASAASTVVNSSYFSKGALWVSGALTRAAQVTSDLGT RGGRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 85 | 84 | 1.7E-9 | ||
| SUPERFAMILY | 2 | 95 | 94 | 1.24E-13 | ||
| PANTHER | 4 | 244 | 241 | 5.0E-125 | – | |
| PANTHER | 4 | 244 | 241 | 5.0E-125 | – | |
| ProSiteProfiles | 7 | 81 | 75 | 9.559 | ||
| SMART | 8 | 78 | 71 | 4.5E-6 | ||
| CDD | 9 | 77 | 69 | 1.96917E-37 | ||
| Pfam | 11 | 71 | 61 | 3.3E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0306500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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