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LotjaGi2g1v0310400.1

Overview

Field Value
Gene ID LotjaGi2g1v0310400
Transcript ID LotjaGi2g1v0310400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin cross-linking protein; TAIR: AT1G27100.1 Actin cross-linking protein; Swiss-Prot: sp|Q76PC7|IF3M_SCHPO Probable translation initiation factor, mitochondrial; TrEMBL-Plants: tr|I1JBT0|I1JBT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0310400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:78469380..78478072) extracted from Lotus japonicus Gifu genome v1.2.

TAGAAAAGAAAGACTTGATCCATTTTCTTGTTATATCCATTAATCTCAAAGAAATACAATTTATAGCTTCTTAAAATAAA AAGCCCTACATGTGGCATCATCTCACTTCTAGGAATATACTAGTACTGGAATATAAAAAGAACTAAAACATATAAATAAA GTGACTAAACACAAGTTATCCATCTACTTGGCTTAGTAGATCTAGCTGAAGAGAGTCCAATAACTTGGTAGCTATCAACT ATCAAGCACCCCTTTAGAAATCAACACATAGCCACATGAGCAAAAGCCGTTATGCAATGAGTTAGGGATTTATTTGTATA TAGGGAGACCTCGTCAAAAGAGACTTCATATCCACTTTAATACACATACTCTGTACGTACGCGTTGAATTCTCCTTAGGT TTCAAACTTAGTATTTCTTACGTATACTACGAGGCCTCGGTAAAACTTTTTCTGGTTCTGACCCTGAATGCAGCTACTTG TATATCAGACGGTCCCTTTTCATACCCTCTGTCGCCTTCACAGAAATTTTCTTCACATTTTAAAAAATATTTCTTCAGAC TTTCATTTTCAACACGCAACAATAATAACATTTATTCGTCTCAACCGTTTGTATTACCTGGAACTTTCTCCGTCAAACCT ATCTATTTGATTCTTTCTAGTACTCTTCTTATATCAAACAGTCCAGAAGGGGTTTCGTTCTAATCTTTTTCTGCTGTCGT GATTTAAATCATATCCATCTAATAAGAAATACAAATATCACTACCACTTTCAAACAAGTTAAGCCCCAACATGATTAACC TTTTCATTAACCTTTCCATTGTGACGAAAAAGTATTTACGTACAAGATCATCATATATATACCAACTTCCCGAATAATAA TAATAATAAAATTGCATGGCCGTATTACACACCATAATATTTGATTATATATTTGAACTATTTGTGCCGTGTTGAACATA AGAAAGAAAAATAAAATCTGTCGCCCATTTTTCTTCTAACTTTTTTGAAAATAAAAATTTTAAATGACTTGCGAATATAA ATACCGTGTCATACCATCCACATTACATAGTCATAGTCCCTTGACTATTGAATATTGTCATTGATAACTCAGTAACTAGC TAGGCAGAGCCCAGAGGTTCCACGTAGTTGCAGCCCCAATCCCTTGTAGTTTCACGCCTTTGAATATTCTAGAGGCCTAT GTGCAGGTATGTATACAAGAAATATTTTTTATAATACATTTCTTTTTCTTTTCATTGTATTAAATTTATTTATTAGGGTA TCAACAATGAAGTTTTCACAATATAAGTAATACTATATATATATATATAACTAATAAATTTTTGAAATAATCATCATTCA TTTGTTAAAAAGTTAGGTCTTAACAACTTTTATTGTAAAAAATTCTTACTATGTAGATGTTATAAAAACACCAATTATTA GAAAAGACATATCAAATGAAAATATAATTTGTTTTTTTAGTTTCAACTTAGAATTAACTTTTGACAAGTTATTAGTGGAG GACGCGAAGAGGAGAAGTTAGAGAAAGAGAATATTAACTTTATGATTTAAGTAATACTATATCTATATCTATATTTTAAG TCTCGAATAATAGCTTAAGTGGTAAGATGTATGAGATATGTGAGTTATTGGGGTAGGTAGAAAAATTAATCCCATCTTTC TAATGTATCAAAAGAAATAATTTAAATTTAAATATATAGGAGAGTTTTTTTTGTCACGAAAGAAATCAGATATATAGGAG ATTTAATTGTAAATAAGATAACTTTTTTCTTTCTTAAAATTACATCTTTTATAATTGTAAATTAAAGATAAATATCAACA AGAAATTTGATTGACTTTTTATCTGATTAAGATAAAATTTATCATTCCACTCTTGAAATTGACATTGAAAGATAAATTTA ATCAATCAATTATTTACTTTAAATTTACATTTTATTTTGAAAACAATAAAATTGTAGCAATTGAGAGGCAATATTAAAAT TTAAAATCTATAAAAGTATTTGAGAGGCCAAACGAAGAGTTATGAGAGGATATCTGTAATTTTTTTGGGGTCAAACTAAA AAAAAACTCGTATTTATAAAAATATATATGAAAATTAAAATTCTTGGGGCAGCCCATAACAATCCTTTAGATCGACATTT TTTTTTACAGGAATCCTTTAGATCGACATGATCACATGACTCATGTAAAACAAATTAATAAAATTATAAATATCATATCA CGCCTTTGATTATTTTAAAATACTTAAGTTAGAGTTGAATTCTTGCTCTCCTATGTGTCCTTTTTTTTTTGAAAGTCTCT CTGTCCCTTTTTTTTTTGGTACATTGAAAAATACTCCTGTGTCCTTGAAATAAAATAAAATATATCAAGTATTTTTGACA GCAAAAGATATTTTATTGGATATATCAAGTTGAGTTGCCTAAATGACCCATGATAAAGTTTGAGTTAAATAACCCATCAT CCAATCACATTGGAGATAAGTGAGTTGGAATTTCTATATTTTATTTATTAATTTATTTCCAACTCATTTATCTCTAATGT GATTTGATGATGAATTATTTAACCCAAACTTTATCATAGTTCATTTAGACATCCCCTATCAAGTTATCAACTGAAAAACA ATCTATTAAGTCTATGCACTTCAAACTCAGGAGGCGTATAAAACTAACCATTCACTTCTTGTCTTGGCAATTATATTAAC CCTTTTCGCCAAAGGTTGCTTAATGATATACACTTGATTTTAGTCACAACTCCTATGAACGCGTGATTGATTTCATAAAT ACTCTGATTAATTAGTGATTAAGCTTCATCATCAAGTGTTAATTAATGGAGTTTTTCGGAAAAACCAAGGTAGTGAAGCT TCGGAGCCACATGAACAAGTACCTGGTGGCCGACGAAGACGGCGAGAAGGTCCACCAGAGCAGGAGCGGCTCCGGGAGGA GAGCAGCATGGACTGTGGAGCCAGTGAAGAACAACCACCGCGTGAGGTTCAAGAGCTGCCACGGGAAGTACTTAACCGCG ACGGAGACGCCGTTTCTGTTGGGGATGACGGGGAAGATGGTGAAACAAACGGAAGGGGGTGTGGATGGGAAGGAAGAGTG GGAACCGATACGGGATGGGTTTGAGGTGAAGCTGAGGAGCTGGTGCGGGAAGTTTCTGAGGGGGAACGGTGGCACGCCGC CGTGGAGGAACACGGTGACGCATGATGAACCACATAGCTCCGCCACGAGGGATTGGGTTCTGTGGGAGGTTGAGGCGGTG GAGGAGGATGAGAATTCGATTGTGGATGAGTTTCCTGAGAGTGTGTTGTCCTCTTTTGCTAATTCTGATGATCTCTCCGT CGCTGGTTCTGATGAACCGTCGTCGCCGATGTCCGTTTTCAGTCTCACTTCTCCGACGCCGGTGCGAAATTTTCAGGTGA GTCTTCCTCTGTTTTTTCCATTGCTTTTCCCCTGTTCTCGTTCATTCACACAAAACCTACTCTCTATCTCTTTTTACCTA GATTTTCTATCGCATTAACTATCACATATTTAGTTTCAAAAAAAATAACTATCATATATTTATATTTTATTATTTTCTTT TCTGTTCATATCTCTAGTGTAAAAAGAGGTCAATTAACAATTGAATTTTCCTTGTTGGTTGAAAAATATGGTTTTTATAA CTATTTATTACTTTACATTTCATTAATTTAATGTAGATTTCAGTTCACACTTCACATAGTGGTTGCACGCGGAAAGAAGT TCTTATATTATATATTAATGTGAGGGTGTTGCTCCGGTACCCATTAAAATTAAAAATAAGAGGGTATAATACATTTTAGT TCATTTTTTACCATACAAATGACGTATTTATAAATTTTGAAAAGTTTACTATGGAGAAAACATAACTAAAAAGTATGGAA CCCTCCACTTTTGAAAGGGTACCAAAGAAATTAAAGGGTACCAAAGAAATTGCCTGACTCTTATTGTTTTGGTTTTCGGG AAAAGTCTACATAATAACTTTGAATTTTATGCCTTTTAGTTTACATTTGAATTTCTATTTTCTTCGCAATTATTATTAAC AGTAAATAAATCCTCAAAACTATTTTTTTAAATAAAATAAATATAAATCAATTGTACGTGGATATGTAGGTCAGAATATG TTCCTTTATAAATCCTTAAATTTATGATTTTTAGGTATGCAAGAAAGGTTTTGGTTAAGGTCCTTATAGTTATAAGTATA AGGAGGGTTTAATTTTAATTATATGAAGGTTTTAGAGTAGAATGATAGGAAGAAATTCCTATGAAAAAGGTTCAGCTAAG AACTAATAATAAGAAGAAAGCTATTAAAATATAAGGAAGAAACAAAATGAGTTATGATACATCCACATCTCTCACCTTTT TTTCACCTTTATTTTCTATCTATTTCTCTCTTCTCTATCAATCAAATCACTTATCACATCTTTACTTTCTCTATCTTTTC TTCTTATCTCTCTCTCATTCTCCACCTCTTTCCACCTCTACTTTGAGGTGTGAACTAAACATTATTCAAACCTTATTCAA ATACTCCAAATAAAACTAACACATTAGGTGTTCTTGTCTAAGAACAAGAGAATTTTAAGGAAACTCTAACAGACATATAG TAAAGGAAATAAGTAGCATGTAATAAATGAATTAGTCCTTTTACAATATATGACCTTCCCTTTTATAGTCGGGTGATCCA AAACCCTAATTCTAAGCCTAAATTGACCCTGGCGCCTCATAAATCATCGGCCTAAGAGTCCTTACAAGAGACACAATCCA AGTCTGATTACTAGGGGCATGACCTAACCACTTCACAAGGGTTAGATCGCCATAACCTAGCTAAAGATGTGACAAGTCGC TCTTTTGGGGTTCGAAGGAGGTCTCGCCCTGCCTTTATGTAGTCACGTCAAGCTCTGATTTTGGGCGGGTTCTATCATGA CAATTCTCCTCCTTCCCATAAGCCCACAAAACACCGCGCCCAAAGCATGAGAGTAAAATGTGTGTCAATCATCTTGATTT GCCTTTGCCTTCTAATCTCCTCTGAAGACGTGTTCTATCATAGGAGGTCCCGCCAAGTCCAGTGTTCACAAGCCAGTATT TCCTAGCCACTTGAAGGTCACGAGATTCCACTTCCAATTGATTACCACTTTGTTGGATTTCAGATGCTATCTATGTTGAT TGACCAAAAATAAATTAAAAGAGAATGCTATATGTTGCTCCATGCCTTCACCAACTCTTCTCCACTAACGAAAATGTGAT CACACTCTTTGCACTAAACGCACTATATACATAAAAGATTGATGACACAAAAGTGGTTGATATCAAGAGCTTGTTTTAGA AGATAATCGTGCATCTTTTATTCCCACAAGTAATTAATATTCATGTCTACTCGTGTCTTGTGCATTTTATATGAAAAGTT CTTGATGCATATAGCGTTTCCCTGTCCAAGCTATATTTGATGTAGAGAATGGAGAATATAGCTAACAATAACACATCATT ACATTTTTCTAAAATGAAAATGATTCTTACAAAAGTGTCTATTTGTGGAAAACATCTTGTGTAGACGTTAGTTTCATCCT TTTTGGTGGGCATTTGTCGCAATGCGAATCACCCACCATATTCCACAGCTTCCACCTCACATATTGTTTATTTTCCTTCT TTGTATGGGTCTCTATTCCTTTATGCTTTTTTTATTGAATTTTGAATTTTCTATTTCTGTGTATTTTACTTATTTCTAGA TGGCTAGATTCAACCTTTATTCTCTTTAATTTCTTTGCTATCCTCCAACACGCACCATTTTATGAAACTTCCATTAGATC CCAGCACATATAATAGCATATCCGATACTCATACTTAATTGACTAGTCCTGAATCTTTATGTATTGAATTAGGCTGACTC AGCAATTCTTATCCAACTTCCACAGTAGGAAAATGATATGGATTAAGCTATTTAATTCAATCAAATAATAACTGCATGTT TAGAAAACGTTTATGTTCAGAACGCGGAATCAATTCTGTTACAAAATTTCTTTGAGTAGTTTTTGAGTTTTAAAATTGAT TCCAATAAAACATAAACCGATTCAAACATGCTATAAAAGTCTAAAATCAATTTGGAAATTTTCAATTAATATAATAGTAA TTCTTGCTGAGAATTTGAGTAAGAAATAATCAAATAATTTGTTTTACATTTCCGGAATATTTCTAATACTTTTCAACTCA TAATTGCCAACAATTCTACCTTTACCTCCTCTTCTTCAAACAGTCTAGATCCTTGATGGCGGCCACACACCACACGCAAG TCTAAGTAGAAGTGATTATATTAGATTAAGTCTAAGTAGTAATTAGATAATTGAGATTCTTAATCACTTAATTTAGAATA ATTCTTTTTTGGTACATCGAAAAGATAAATTGTACCCGCCAAGAATTGATCCCTGGACCTCCCCCTACCCAACTCATACG TCTCTTGCTCATACCACTTAAGCTATCATACGGGGACTAATTTAATTCTTGAGCGGTGTGCATGTATAATAATTTGTTGA GAAACATATACTCACCTAATGTAATTTCCGAGTTTTAAGCGGATTAGTCTCGTTCCTGCCTACAACTCCCAAACAGAGGA TACAAAAGTGACCGGTTTGTCCACGCAATGCCCGCGTGCACTCAAACGTGTTGCCAGTTGCCACTGCTGACTGCTGTTCT ATATTTCACAGTGCACACCAAACCTTTTCAACCTCACCAGTTCCAATCATAATCCCACTAATATATAAATACACCCCTCA AATCCCTTTCATTCAATATCCACCTTAATAATTCTTTCATTTTTTCCCTGAAATCAAAACCAAACTCTCAACAATTCAAC TAACCACCCTCCCCTGTTCTGTTCTGTTTCTAAACAAATATTCATCACATTCACATTCATTCACATATATGCAGGCAGTG AGCTCCAACAAATTCAGAACAGGCATGGACTTCTTCCACTTCGCCAAGGCGGTGCGCCTCCGCAGCAACCACGACAAATA CCTCCTCGCCGAGGAAGATGAAGAATCCGTCACACAAGACCGAAACGGCTCCTCCAAGTCCGCCAGCTGGCTCGTCGAGT ACGTCCCTGAATACGGCAACATCATCCGCCTCAAAAGCTGCTACGGCAAATACCTCACCGCCTCCGACCACCCCTTCCTC CTCGGCATGACCGGCCGCAAGGTGCTCCAGACACTTCCCTCCTCCACGCTTGACTCCGCCGTGGAATGGGAACCCATCAG GGACGGTGGTCGTGTCAAGCTGAAGACCCGCTACGGCAACTTTCTCAGAGCGAATGGCGGCCTTCCGCCGTGGAGGAACA CCGTCACTCATGATATCCCCCACCGGACCGCCACGCAGGATTGGATCTTGTGGGATGTTGATATCGTCGAGATTCATGTT AAACAACAACAACAACCTTCTGCTCCACCCCTCTCTGTTCCGGACTCTGTTCCCACAAAGCCTGTGGCGGCTCCCACCAT ATCTGCTAGCTTTTCACGGCAACAGGTATAAACTTCTTGGAAAAGTTTGCAAGTTTTTATCTGGGTTGCTTTGAGCCTTT GAATATGGTTAAATTTTGACTATTTTTTGGAAATTTGTTTCCTGATTGAGTTTGGTTCTGTTTTGCAGTCGAATGATAGT GTTGGTTATTCACCGAAGAAGACGACGGAGGGGCGAACTATATACTACCATGTTGCTGAAGATGATGGAGAGGTGAGTGA TGAAGGTGTACAAGGGTATTCTTTGATTTTCAAAGGGAATGGAGTTGAAGAATTGAAGAGAAAGTTTGAGGAAGAGACAG GGCTAGAGGGAGTGATTGTGTGTAATCGGAGTCCTTTGAGTGGGAAGCTTTATCCTCTTCGCTTGCAGCTTCCTCCCAAC AATGTCACCATGCATGTTGTTCTGGTTCTTCCTTTCTCTAAAGGTGAGTTCTGATTCCCATTTGACTGTTTGCATTGCTT ATTAGACATCATTTGCTTTTGTTCTGTGTTGTTTCATCATTTGTACGTGCTAGTTTGTGACCTTAACATTTGCCTTCTTT TCTGGTGTTTCAGTGGCAAGAGATTTTGAGGCACAAGGTTTCATATGATCAGAAGAAGCTTAGATTTTTGGAACACAAGG CTCTATGTACATACTGATCCATCCATTGCATTTGTTAAGCAGAATTCATCAAGGTCCTATGGGAATCATGGCAGCAATAA TCATTCATTGATTACATCCAATGTATTATATTATAGGGGGCTAATACTTCCAATGTTGGATTTTGTTAAGGCATCTTCTA CAGTCACACTACCTATAATATTAGCTGTCTTTCATGTGGATTCTGGAATTTTGTTGTTTCATGATTTTGTAATTTTCTGT GCTTCATTATTTTTCTCCAGACTATAATGATTAGTGAGGCATGTGCATATAAATTTTGTTAGGCAGATTTGTTATCAGAG ATAAAATTTCTATTATTCATCAGAAATATTACCAGGCCCAACACGCTTTGTTCTTAATCATAATTTATTTGTGATAAGTT GTTTCTATTCTCAGGCACTTAGGCTTCACCTAAGTAAAAAATTGGTAAATTTTACTTTACTCCATAGAGTTTAAACTTTA AAGGATATATATACACGCGCGATTATAATGATATTAACTTACTTATACTACGC 

CDS sequence (LotjaGi2g1v0310400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTTTTCGGAAAAACCAAGGTAGTGAAGCTTCGGAGCCACATGAACAAGTACCTGGTGGCCGACGAAGACGGCGA GAAGGTCCACCAGAGCAGGAGCGGCTCCGGGAGGAGAGCAGCATGGACTGTGGAGCCAGTGAAGAACAACCACCGCGTGA GGTTCAAGAGCTGCCACGGGAAGTACTTAACCGCGACGGAGACGCCGTTTCTGTTGGGGATGACGGGGAAGATGGTGAAA CAAACGGAAGGGGGTGTGGATGGGAAGGAAGAGTGGGAACCGATACGGGATGGGTTTGAGGTGAAGCTGAGGAGCTGGTG CGGGAAGTTTCTGAGGGGGAACGGTGGCACGCCGCCGTGGAGGAACACGGTGACGCATGATGAACCACATAGCTCCGCCA CGAGGGATTGGGTTCTGTGGGAGGTTGAGGCGGTGGAGGAGGATGAGAATTCGATTGTGGATGAGTTTCCTGAGAGTGTG TTGTCCTCTTTTGCTAATTCTGATGATCTCTCCGTCGCTGGTTCTGATGAACCGTCGTCGCCGATGTCCGTTTTCAGTCT CACTTCTCCGACGCCGGTGCGAAATTTTCAGGCAGTGAGCTCCAACAAATTCAGAACAGGCATGGACTTCTTCCACTTCG CCAAGGCGGTGCGCCTCCGCAGCAACCACGACAAATACCTCCTCGCCGAGGAAGATGAAGAATCCGTCACACAAGACCGA AACGGCTCCTCCAAGTCCGCCAGCTGGCTCGTCGAGTACGTCCCTGAATACGGCAACATCATCCGCCTCAAAAGCTGCTA CGGCAAATACCTCACCGCCTCCGACCACCCCTTCCTCCTCGGCATGACCGGCCGCAAGGTGCTCCAGACACTTCCCTCCT CCACGCTTGACTCCGCCGTGGAATGGGAACCCATCAGGGACGGTGGTCGTGTCAAGCTGAAGACCCGCTACGGCAACTTT CTCAGAGCGAATGGCGGCCTTCCGCCGTGGAGGAACACCGTCACTCATGATATCCCCCACCGGACCGCCACGCAGGATTG GATCTTGTGGGATGTTGATATCGTCGAGATTCATGTTAAACAACAACAACAACCTTCTGCTCCACCCCTCTCTGTTCCGG ACTCTGTTCCCACAAAGCCTGTGGCGGCTCCCACCATATCTGCTAGCTTTTCACGGCAACAGTCGAATGATAGTGTTGGT TATTCACCGAAGAAGACGACGGAGGGGCGAACTATATACTACCATGTTGCTGAAGATGATGGAGAGGTGAGTGATGAAGG TGTACAAGGGTATTCTTTGATTTTCAAAGGGAATGGAGTTGAAGAATTGAAGAGAAAGTTTGAGGAAGAGACAGGGCTAG AGGGAGTGATTGTGTGTAATCGGAGTCCTTTGAGTGGGAAGCTTTATCCTCTTCGCTTGCAGCTTCCTCCCAACAATGTC ACCATGCATGTTGTTCTGGTTCTTCCTTTCTCTAAAGTGGCAAGAGATTTTGAGGCACAAGGTTTCATATGA 

Protein sequence (LotjaGi2g1v0310400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFFGKTKVVKLRSHMNKYLVADEDGEKVHQSRSGSGRRAAWTVEPVKNNHRVRFKSCHGKYLTATETPFLLGMTGKMVK QTEGGVDGKEEWEPIRDGFEVKLRSWCGKFLRGNGGTPPWRNTVTHDEPHSSATRDWVLWEVEAVEEDENSIVDEFPESV LSSFANSDDLSVAGSDEPSSPMSVFSLTSPTPVRNFQAVSSNKFRTGMDFFHFAKAVRLRSNHDKYLLAEEDEESVTQDR NGSSKSASWLVEYVPEYGNIIRLKSCYGKYLTASDHPFLLGMTGRKVLQTLPSSTLDSAVEWEPIRDGGRVKLKTRYGNF LRANGGLPPWRNTVTHDIPHRTATQDWILWDVDIVEIHVKQQQQPSAPPLSVPDSVPTKPVAAPTISASFSRQQSNDSVG YSPKKTTEGRTIYYHVAEDDGEVSDEGVQGYSLIFKGNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNV TMHVVLVLPFSKVARDFEAQGFI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 146 146 2.4E-201
PANTHER 1 146 146 2.4E-201
Pfam 1 140 140 1.2E-60
Gene3D 6 139 134 6.0E-18
SUPERFAMILY 8 144 137 3.14E-24
PANTHER 194 501 308 2.4E-201
PANTHER 194 501 308 2.4E-201
Pfam 208 350 143 5.3E-71
Gene3D 212 351 140 1.5E-15
SUPERFAMILY 212 355 144 1.57E-25
MobiDBLite 364 404 41 -
MobiDBLite 382 404 23 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0310400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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