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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0315200 |
| Transcript ID | LotjaGi2g1v0315200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT1G70210.1 CYCLIN D1;1; Swiss-Prot: sp|P42751|CCD11_ARATH Cyclin-D1-1; TrEMBL-Plants: tr|A0A151TGM9|A0A151TGM9_CAJCA Cyclin-D1-1; Found in the gene: LotjaGi2g1v0315200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79065509..79071576) extracted from Lotus japonicus Gifu genome v1.2.
GTCGGGTCGGGTCGGGTGCCCATGGGTTCGGGCTTCTCTGCCATCCCTAATCCCCACTCAATAGTATTCGAAAAACTAAA ATTGGAAAAAAAAATACATGAAAAAAGAAAAAAGAAAAACATGACCCAAGGCTGCTAGGCCAGGCATCGCATATTATTTA TATTCAAACAAACAGATGAAGAGCTACACGTATCTTTCATCAACACTCACACTCTCTCCCTCCACACACTCACTCACCGA AACCCACCGCTCCGCCGACTTCGCCGATCATCTCCGGCGACTCTAAGCGATGGATACAGAATCATGAGCCACTGCTGCCG ATCGCCATGTCGGTCTCCTGCTCCAACTTCTTCCCCGACTCCGACCTTCTCTGCGGCGAGGACACCTCCAGCATCCTATC CGGAGATTCGCCGGAATTCTCCTCCGACCTCGATTCCTCGCCGCCGCCGTTGGACGATGATGATGAGACCATCGCCGGAT TCATCGAAGATGAGCGCAACTTCGTCCCTGGATTTGACTACCTCTCCAGGTTCCAGTCTCGCTCCCTTGACGCCGCCGCC AGAGAAGAATCCGTCGCATGGATTCTCAAGGTAACGAAACTCTCCGATGTTAACCGCTCTTTCGCGTTATTGCCACGCGC GTAACGGACCGGACGATGCTAAAATGCACCGGTGGTTACTGATATTTTTTTTTATTTTTTGATTTATTTTTCTGAGGCGA ATTGGTTTTGATATGGTGGATGCAGGTACAGGCTTATTTTGGTTTTCAACCTGTGACGGCTTATCTTGCCGTCAACTACT TGGATCGGTTTCTGAATTCTCGGCAGTTGCCGGTGAGTTCTGTGAAGTTCAGATTCAGAAAATTCAATAAAAGAATTTAA AACCAAAAATAGAAATAAATGGAAATAAATAAAGCTGAGCCCGAGAGTGAGAGAGTGCATGTGCGTGGGGAACAAAATTC TATGCAGTAATTATGTGTGACTTTTCTATCGTGAAATCAATGTCCATGGTGCATTATTGCCATAAAATCATTTTAATTAA TTAATGCCATTTAAATATTATATATATATGTGTGTGTGGTTACTTAAAAAAAAAAGTATATGTGGTTAACGTTACGTACA AATGATATAGTGTCTATTATTATGTGCATGTTTGGTTTCATATTTGGCCGCAGCAAACATGGATCCTTGAGTCTGAAAAC AACTACTATTTTTTACTTTCGAAAATGTGGATCACGTCAAATGTGGATTTTGGATGAGTTTTTTAAATATGCTCTATGTC TAAAAAATCTAATTCGTAAAAGAGAAATATGTGTCATTGAATGAAAATGTAAACAAGAATTACTTTCAAAAAAGTATGCT CCACTTATTAAATACAAAAATGTTAAATGCCTTTTGTGATTTAAAATATTAAGTATATTTTCCTCTTCAATTCAAATTTT AATAGTAATTAAGTATCAAAATAATTATTACTTGTAGAAAAATATAGCAAAGCTATGATTATAATGCATCCTATTTTAAT GTCATTATTGCGCAAATAACAAGAATGATATTGATAGCTTCTAAAGCTTTTAGTACTCTCGCCTAGGCACGTCCACCACA CGCGAGATTATATGCTACTTTTTTAGTTTTTTATTTATTTATAAGCATGCTACTTTTTTAGTACTCACTGTTTGATACCT ATAAATATGTTTACAGCAAACAAATGGGTGGCCGATGCATCTTCTATCAGTTGCGTGTTTGTCTTTAGCTGCAAAGATGG AGGAATCTCTAGTTCCATCTCTGGTGGACATTCAGGTACATATGAAACCCCCTTCTTAATTTACTGTAATAAAACAATAT AAATGGCTCATTCTTGATAGATACTACGTACTAATAAATAATAATGGATATATATACATTAATTAAATTTATGCTAACTC ACAGTTTGTCGTTAGTTATGTACTCCATTAGTCCATTATATACTTTGACATTACATCATTTATTTAATTTAATGTGTACA ATACAGGTAGAAGGTGCCAAATACATATTTGAACCCAGAACAATTCAAAGGATGGAGCTACTTGTTCTGGGCATCTTGGA TTGGAGGCTAAGATCAATCACCCCATTTTGCTTCCTCAGTTACTTTGCGTGCAAGTTAGATTCAACTGGAACTTTTTCTG GGTTTCTCATTTCACGGGCCACACAGATTATCTTATCTAATATCCGAGGTAGGTAGCTAAACACTTTTCTGCTGTACCCA AGTTTTAGAGAATGGAATTAGTGAAATGATGATGTTTTTTTTCTCTCCAGAGATAAGCTTTCTTGCATATTGGCCATCAT GCATTGCTGCCGCGGCCACACTCTATGCAGCTAACGAAATCCCTGATTGCTCTCTCGTTAAGCCCGAGCATGCCGAATTG TGGTGTGAGGGGCTTACGAAAGTAAGCATATCTTCTTGACTTCTGCAGATTGTCATCAAACGTTCGAAAAACAGTTGCAT GTGTCTAATTAAGTTGTAAAAAATCACTTATGTTTGTTTGTTGCAGGAGAAAATTATGGGATGCTACCGGTCAATGCAAG AATTTGGGATTGAAAACAACCAGAGTACTAAACCTCCAAGAGTGTTACCGCAGCTGCGAGTAACAACTCAACCTCTCATG AGGTCAAGTGTCTCATCATCTTCCTCTTCTCCTTCATCCCCATTGTCTTATAAAAGGAGGAAATTAAATAACTGTTTATG GGTAGATGATGACAAAGGAAACTTCCAATGAGGAGGGGAACAAAATATAGTAATAAAGGAGGGAGAAGAAAATAAAGAAA GAAATAAGGAACATGGTGGTCCAAGTTGTCCAGAAACCTCAACATTTTTTAGAGGGTTTTTGAGTTTTTATAATTGACTC TGAGTTATGGTGGACATTATAATATGCATCACCCTACTCTATGAGAGTTGTGAGAGATTATTATCGTTTTGTTGGTGGGT ATAGCCATTCATAAATGGCTTTGCAGATTCCCAAGGGAAAGGGGATTTTCTTACATAAATATTGCATAGTGGGAAAGATT GTGTGTGCCTGTGAGAAAACAGAGTGAGGAAATGTACATAGATAAATGCAATTAATATGGTTTGGGTCATGTTAGTGTGA AGTGGAGAGTTCAGAATTCAAAGATGCGCTGGTTCTTGGTGAAAGGGTAGAAGATGGTGGGACAGTACTGCTTGAGAGCT TAGGAGTTTGAGCTGTTTTCTTATAATGGGATTTCTAAGTCAAGCTTCTCATCTTGGCCAGTTAGTTTGCTTCTTTCAAC TTTGATGGGGCACCACAAGAGTAATGGTTAGAAGTTGAAGCTGGCTACATTTTGTGGACTTTTTCTTCTGGAGCGTGCGA CCACGCACGTGTGTATGGGTGTTTTATTTTTCTTTCTCTGTTTCAGTTTTGGCGGGAAATGTTTTCTTTCTTTTTTCTTT TTTCTTTTTTATGGCCTGGAGGTTTGGCCTAACTATACAGGACACATTGCCTAGTGTCCACGCGTGTGATGGATACACGT GATCTATAGTTTATAATTTTTGGATTTTTTCATTTGTTTTCAAGAGAGGAGAACCAACCCTCTTTTAAATAGTGGCCTAA TTGGCTAAGCTTTATAAATGGAAGATAAAGGTCTTTGGGGCCTTTTCCTGCGTGCTGTGTGTATTCAATTCATCACTAGT AACTATAAATTCTATAATTCCTTTCATTCTCTATCTAAGGATGTTCTTTACTCTTCAAATGAGTAGTAAATAGCAGATGA AATTTGTACATGAATCTTATCATGTAGGATTCATTCATCAAATACAATTTTATTGTTCTGTTCACTGATCTCATCATCAA CTTAATTTCCACCAATAAGCATGACACATTTTTCACAATTAGATACTATGTAGATTTTCCATTTGTTCTTATTTCGGAAT CTAAAGAAACTTCAAGCCCCTCCTCTGGAATCTAGTGAGGCATGACTCTGATTTCTGAAGTAGATACACTGCTTGGTCCC CCTAGCAATTATGAAGACGGTACACTCAGTGACTATGACTCTTCAATTGACCAGTTCCTGCTCGTGACAATCTCCAGCCT GTTCTATTATGGTTCTATAGGTGTTCTTCATATGAGGATCATTTAACTGGGTCACCTTAACATCTGAATTCTGAATTTTT ACCTCTTGATCAATAAATGACTCATCATGAAGTGGAAGAAGGATAGCAACTACCTAAAGAGCTCTGTTATGAATATCTTT TTGACACGAATTGAAGCGACAATGACTGAATTTCGGTGGATCGTGACAGCAATGTCACTTTGTCACTTACGATACCCCGA GCTTTCTTTTGAATGTTGATTAAGTGCTAATGCAGAAAAAAAACATCTCTTAGAAAAGCTACTTTAGTACAGAATTTGCT CTCTACAAAGAGAGCTTGTCATTTAGCCCCAAATCCCCGACACAAGGTATATTATTTTTGCATGCATTAACACTAGCAAA CACACTTGACACCACCATGGCTTTATTCCCATGTCTAATTTGCAGAAAAAGTAACTACATATGCATGTTAGGCATTTGTC CTGCAATCTTATCACTCACTTCCTTTGCATGACACCCATATGGCCACTCATTGGATGGTCTCATCCATACATACACTTCT GTCTAATTAAACCCATCTTCATCAAACTTTGCCACTGCAGAGATGGACCATAGTGAAGAAGACTATAGCAACAAGGTGAC AACTTAGGCTCAGTACCTATTTCTCTCATTGCTCTTGGATCCTTGCTCTGTTTAATTGATTATGTATGGAACAAAGACAG TGATTTCATTGGACCACTTTATTATTGATCTATTGCAATTTGCAAACACCAGGATTTTTGAATTATTTTTTGCCTTTTAT GTTGCACACAGGCATTCATTCTTGAACTAAAAAATCTGGTTCGTCCTGATTGAGAAGAGGTATAGTCTCTTTCTACATGT ACAATACTATAGTCTATAGTACTATTCTCGCTTTATGAATTGCTTCAGATAGTCCCACCAATGTGGATCCCCCAATTAAT CTACCATCTATTCCACTTGTCAGTTTATCTAGAGCTTCCAATTTATTAAGGTAACAGAGTAACAGTAGCTTAAATCAATT AATGCAGTATCGCAATAGGTCAATTTAGTAGAGCTATGAAAAATTGGATTAATTGCTAAATAATAAGGCCAGCCTCAGGC ATCTTCCCTGTGCCACTGAACTGATAGCAGATCAAAGTAGGGATGGCAACGGGTAGGATCGGGCACAGGTTTTACAATTA CCAAACCCAAACCCAAATCTCAGAACCCAAACCCAAACCCAAACCCAAACACAAACCTTATGGGCGATAAAATGAAATCC ATGCCCAAATCCATTGGGTTTCGGATATACCCGAAACCCAAACCCAAACTCATTAGTTACGTAGCAATTCAATCCAGAAC TTACTTTCATATAAAAATAAAAGTGAAATTCATAGGAAGAAAAAAAAAAACAAATACTATTCATCATCCTCATCCATCAC TAAAGTGAGACAACAATAGTTTAGAGTTTACTTTCTCAAACATACAAAAGTACAATTAATCATCAAACACTAAGAACAAA GTTTATAAATATATATATGTACGAGGGTTTTTTTGTAATTTTATGTTTCGGGTATCTTTGGGTTCGGGTTTGGGCGGGTA TGGGCACGGATTTAACTAATACCAAACCCAAACCCATAAATGGCTACAGTAACGGGCAAAACCCAAACCCAAATCCAGTC AACTCGGATTTTGCCCGTCAAATCGGATCGGGTTCGAGCGGGTACCCATGGGTTTGGGCAAAATTGCCATCCTAGATCAA AGTTACAGAATTACAAAAGGAATTTGGATTCAGCCCAATATGTACATCACTGAACAAATCACTGAACAAACGACCACTCC TGATCACACTCACTTTTGTGAATGTTATTTACCATTACAAAGTGAAAAGTTGAAAAAAAAAATCATTTTATAACAGTAAA AAACTACAATAAAAGTGGGCGCAACAATGATATATACACACCTCATTTTCAAAACACTTCATTTCCAC
CDS sequence (LotjaGi2g1v0315200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTCTCCTGCTCCAACTTCTTCCCCGACTCCGACCTTCTCTGCGGCGAGGACACCTCCAGCATCCTATCCGGAGA TTCGCCGGAATTCTCCTCCGACCTCGATTCCTCGCCGCCGCCGTTGGACGATGATGATGAGACCATCGCCGGATTCATCG AAGATGAGCGCAACTTCGTCCCTGGATTTGACTACCTCTCCAGGTTCCAGTCTCGCTCCCTTGACGCCGCCGCCAGAGAA GAATCCGTCGCATGGATTCTCAAGGTACAGGCTTATTTTGGTTTTCAACCTGTGACGGCTTATCTTGCCGTCAACTACTT GGATCGGTTTCTGAATTCTCGGCAGTTGCCGCAAACAAATGGGTGGCCGATGCATCTTCTATCAGTTGCGTGTTTGTCTT TAGCTGCAAAGATGGAGGAATCTCTAGTTCCATCTCTGGTGGACATTCAGGTAGAAGGTGCCAAATACATATTTGAACCC AGAACAATTCAAAGGATGGAGCTACTTGTTCTGGGCATCTTGGATTGGAGGCTAAGATCAATCACCCCATTTTGCTTCCT CAGTTACTTTGCGTGCAAGTTAGATTCAACTGGAACTTTTTCTGGGTTTCTCATTTCACGGGCCACACAGATTATCTTAT CTAATATCCGAGAGATAAGCTTTCTTGCATATTGGCCATCATGCATTGCTGCCGCGGCCACACTCTATGCAGCTAACGAA ATCCCTGATTGCTCTCTCGTTAAGCCCGAGCATGCCGAATTGTGGTGTGAGGGGCTTACGAAAGAGAAAATTATGGGATG CTACCGGTCAATGCAAGAATTTGGGATTGAAAACAACCAGAGTACTAAACCTCCAAGAGTGTTACCGCAGCTGCGAGTAA CAACTCAACCTCTCATGAGGTCAAGTGTCTCATCATCTTCCTCTTCTCCTTCATCCCCATTGTCTTATAAAAGGAGGAAA TTAAATAACTGTTTATGGGTAGATGATGACAAAGGAAACTTCCAATGA
Protein sequence (LotjaGi2g1v0315200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSCSNFFPDSDLLCGEDTSSILSGDSPEFSSDLDSSPPPLDDDDETIAGFIEDERNFVPGFDYLSRFQSRSLDAAARE ESVAWILKVQAYFGFQPVTAYLAVNYLDRFLNSRQLPQTNGWPMHLLSVACLSLAAKMEESLVPSLVDIQVEGAKYIFEP RTIQRMELLVLGILDWRLRSITPFCFLSYFACKLDSTGTFSGFLISRATQIILSNIREISFLAYWPSCIAAAATLYAANE IPDCSLVKPEHAELWCEGLTKEKIMGCYRSMQEFGIENNQSTKPPRVLPQLRVTTQPLMRSSVSSSSSSPSSPLSYKRRK LNNCLWVDDDKGNFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 333 | 325 | 4.0E-128 | ||
| PANTHER | 9 | 333 | 325 | 4.0E-128 | – | |
| MobiDBLite | 20 | 35 | 16 | - | – | |
| MobiDBLite | 20 | 46 | 27 | - | – | |
| SUPERFAMILY | 42 | 178 | 137 | 1.63E-33 | ||
| Pfam | 51 | 178 | 128 | 3.4E-27 | ||
| Gene3D | 52 | 242 | 191 | 1.1E-45 | – | |
| Gene3D | 62 | 179 | 118 | 1.1E-45 | – | |
| ProSitePatterns | 79 | 110 | 32 | - | ||
| SMART | 84 | 172 | 89 | 9.1E-16 | ||
| CDD | 85 | 171 | 87 | 2.23345E-15 | ||
| SUPERFAMILY | 163 | 276 | 114 | 3.12E-6 | ||
| Pfam | 181 | 283 | 103 | 5.7E-13 | ||
| SMART | 181 | 309 | 129 | 4.9E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0315200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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