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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0320100 |
| Transcript ID | LotjaGi2g1v0320100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF936 family protein; TAIR: AT1G23790.1 dicer-like protein (DUF936); Swiss-Prot: sp|Q99IB8|POLG_HCVJF Genome polyprotein; TrEMBL-Plants: tr|A0A0L9US29|A0A0L9US29_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0320100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79489460..79493020) extracted from Lotus japonicus Gifu genome v1.2.
TAACAGTCCAAGCTGAGCTTTACATCACTGCATGTAGCGGATTTCACCTAATGAGGACAAGACTTATTTGACTATGAAAG GCATCAAAGTTAACCTTTAGTTGCACATAATATCAATATCAAAATCACACAGTATAAATCCAGGGAAAACTAGACAATTA ATTTCTAGTCTGTTCAGTAAAAAAGAAAAAGAAAAAGAAAAAAAAAACAATCCGTTGGTGATATGTCCCACAGAGTCATA TATGACCGTTAGACCAACGTTCTTCTAAAAGTATGAATTTCGAAAAACAACAAACAACGCTCACAAGAACAACCCAGCGA AACAGTTTCATCAATTCCACGCTTTCTTCTTCTCTTCTCCCAAAGATTCAACAATGGCAACACTAGCACCTGGAATCTTG ATGAAGCTCCTCAACGGACTCAACACCGGCGTCAAACCCACCAGCGAGCACCGCAGCTCGCTGTTACAGGTAACCGACAT CGTCCCCGCCGATCTCGACGAGAAGAGCCTCTTCCCGAAACAAGGCTTCTACATCAAAGTCTCCGACTCCTCACACTCCA TCTACGCCGCACTTCCCTCCGATCAAGACGACATCGTTTTCAGCAACAAGATGCAACTGGGTCAGTTCATCTACGTCGAC CGGTTGGAACCCGGTTCCCCTGTTCCCGTTCTCAAAGGCGCTAAACCACTCCCCGGTAGACACCCTCTCGTCGGAACGCC GGAACCGTTAATGGGTCTCCGTGACAAGAAGGAAGCGCCGCAGCCGCCACGTGGTGGCGGCGCAACACCGCAACAACAAC AACAACAACCGATCAGAAGAGGTTCTTGGGGTACTGCAGGGAAGAATCTTGATGAAAACAACGTTTCTTTTTCTTCTCCG ATGGTTTTCAAGCCGGTGAATTTGGATTTTGATCAGTTTTCTGCTGCTGCTGCTACTCCTGTTAGAGACCGTTGTGCTGT TCCTTCTTCGCCGTTGATTAGAGGGAGGGTTGGAACTGGAACTGGGACTCCGGTTTCTGGTGTTAGATGCTCTGTTGGTG GAGGGCTTCTGGCGAAGATGACGGATTTCAAGGGGGATAGTCCTGCTTTGCTTAGGAAAAGCTGTGCGGTGTCTTCTTCT AATGCAAGATTTTCCAGGAGCAGGAGTGTTTGTGAACGAGAGCCTGTAACTCCCTTCAAGTCAGCTGTAGGTACATTATT CCTCTTTTTCATGTTTTTAGAAAATATAGAAGAATCAATCAACCATGCATTAAGCTCTAATGATGATTGGATATAGGAAT TGATTCTAAAGCCAAAATCAATTCTGATGATAAGTTTCTAATTTAGTTAATGAGTGCCAGAATGTATTCTAATGAAAAGT AAACTCATAATCCAAACATGTTATTAGTCCTTTGTTCAACAATTGATTCTACAACTACTAGGAAGAAGCTTATGTGAACA ACATTTGGATTTCATAATTGATTCTAAGGAAAAAGAAGCTGATTCAACAATTGATTCTAAAATCCATAATTAACTAGGGA AAGAAGCTTAGGTGGACAGTTTTTGGAACTGATTCAAAGAAAATAGAAGCTGATTTAAACATGCTATTTCTATTCTTTTT TCTAAGGTTGGTAAATTTCATCTGCAGGAGAAGAAAAGTTGTACTCCGCCGCCGCGGTTGAGAAATGCAAGAGTGGCATT TATTGGGGGAGATGCTGCTCAAAACCAGGACTCAAATGTTCCTTCTCACCCCAAATCTCTGTCTACAACTAATTCAGCAT TTGATAATAGCAACAATCAAAGCCTCCCCAAGAATTTGCCAGGAAACCTAAGTTTACTAGGGAAGGTAAATTTCTAAAAG CTGTTCAAGTCTTTCTCACATTCATTGAAGAACAACCATATTTATTCTTATGTTACTTCACAGGAAGCTGTGCAGCAAAG AGAAGTGGCTCAAAAGATTGCCCTTCAAGCATTAAGAGATGCTTCAGCTACTGAGGCAGTAGTTCGTTCCCTCAAGTATG TATTGATATTCCTATCCGTTCTGTTTTGTTTGAGCTTAGAGTAAACTAGCAGCACCATTCAAAGCTTAACATAGTTATAT GGATCCCTGATAATAAAGATGGATCATTGATACATGTTATCTGGATCACTAGGTGAGTTTAGTTATATGGATCACTAATC TATACTAAAGATATTGGTTTGTTTTACAATGGCCGTCGAAAGCCTAAAATATACCCTTCATCCTTTTTGCGAGTTTAGGA CCGGTTATTCAAGCATAGGGAGCTAACAACTGATAAAATTTGCTGTTTGTGCTTTATTTCAGGATGTTCTCAAATTTATG CAAATCAGCTCGAGCCGATGCTCCTGCTGCCTGTTTTGAACGGTTTTTGGAGTTCCATAAAGATATTGTACAATCAGTTA GTGAAATGATGTCCACTCAAGCAGCTACTTTAGCTTCAGAATTGGCTCAGAAATCAGATAAACAACCTGAAGAAGAATCA CATATTTTACATGAAGTTGCGCAGAATTCCATGGAGCAATCCGGGAACTCAGAATCAAACTTGTCAAAGAGGAGGGGTGC TTTGAGCAAGTCAATGGCTGCCATTCCTGAAAGACATGAGCACAAAACAAGTTGTGGGAAGCTCCTAAGATCATCAAGTA CGAGCCAAAAGGAAAGTTTGGAGAAGAAAGGTTCATCTTCGGTTTCAAAAATGACACTAGAACCTGTTGTCGAAAATGAT GAGAATAAGAAACCAGCATCATGCAGCTTGAGCAGCACAATCAAACTGGGAAAGCAGATTGAAACAGAAGCTGGAAATTG GTTCATGGAATTCATTGAGAAGGCCTTGGAAGCAGGTTTGAAGAAAACAAAGGAAGCATCAGGTGGGGATGTTCGGAAAG TTCCCCAGTCTCTCATACTAAAAGTTATGAACTGGGTTGAGGTTGAACAGTTCCACAGTACCAAGCGGCCTAGACATCCT AAAGCAGCACAGATTGCTAGGAAATTAAGAATCAAGATGAAAAATCCTTGATATATTGGTGTTCAATTGTGAAAACCCAA TCAAAATGTGTCAGTAGTGTGGAATAGTAGTTGTGAGTTGTGACAAATCTTTTCTCCAAAAAAATGGTTTGAGAACTTTT AATTGGATTGAGTTAATTTCTACATATATGGAAGGTGCTCTTCATGCAGAAATATGCCTTCTACAGGTTATTTGTTTGTT TCAAGCTTTCCCAATGTCATGTTTTTCTGTTCTAAGGAATGGGATCTGGTGAGGTTTGAACAACCAATAATAGGCTCTTC TTTTCCTTTTGTTTATTTTATATCCTTGCTCTAATCAATACTGTATGAAAAATAATTTGTATCTTCACTCTAATCAATAC TGTATGGAAAATTAATGTGTTTATGAGATGTGTCTCCCTCTCATATGGAAAATGCTCTATAAACCATTTTATAATCCATT ATAAGACTGCAACACTTTTTTTTTTTTTGTTAAAGTAGGAAAGAAAACAACAAACAAATCATGGGCTGTTTGATTAAAAA AATTGAAAATTGTAATTTAACATGTTTGTCTCAGGTTGTTT
CDS sequence (LotjaGi2g1v0320100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACACTAGCACCTGGAATCTTGATGAAGCTCCTCAACGGACTCAACACCGGCGTCAAACCCACCAGCGAGCACCG CAGCTCGCTGTTACAGGTAACCGACATCGTCCCCGCCGATCTCGACGAGAAGAGCCTCTTCCCGAAACAAGGCTTCTACA TCAAAGTCTCCGACTCCTCACACTCCATCTACGCCGCACTTCCCTCCGATCAAGACGACATCGTTTTCAGCAACAAGATG CAACTGGGTCAGTTCATCTACGTCGACCGGTTGGAACCCGGTTCCCCTGTTCCCGTTCTCAAAGGCGCTAAACCACTCCC CGGTAGACACCCTCTCGTCGGAACGCCGGAACCGTTAATGGGTCTCCGTGACAAGAAGGAAGCGCCGCAGCCGCCACGTG GTGGCGGCGCAACACCGCAACAACAACAACAACAACCGATCAGAAGAGGTTCTTGGGGTACTGCAGGGAAGAATCTTGAT GAAAACAACGTTTCTTTTTCTTCTCCGATGGTTTTCAAGCCGGTGAATTTGGATTTTGATCAGTTTTCTGCTGCTGCTGC TACTCCTGTTAGAGACCGTTGTGCTGTTCCTTCTTCGCCGTTGATTAGAGGGAGGGTTGGAACTGGAACTGGGACTCCGG TTTCTGGTGTTAGATGCTCTGTTGGTGGAGGGCTTCTGGCGAAGATGACGGATTTCAAGGGGGATAGTCCTGCTTTGCTT AGGAAAAGCTGTGCGGTGTCTTCTTCTAATGCAAGATTTTCCAGGAGCAGGAGTGTTTGTGAACGAGAGCCTGTAACTCC CTTCAAGTCAGCTGAGAAGAAAAGTTGTACTCCGCCGCCGCGGTTGAGAAATGCAAGAGTGGCATTTATTGGGGGAGATG CTGCTCAAAACCAGGACTCAAATGTTCCTTCTCACCCCAAATCTCTGTCTACAACTAATTCAGCATTTGATAATAGCAAC AATCAAAGCCTCCCCAAGAATTTGCCAGGAAACCTAAGTTTACTAGGGAAGGAAGCTGTGCAGCAAAGAGAAGTGGCTCA AAAGATTGCCCTTCAAGCATTAAGAGATGCTTCAGCTACTGAGGCAGTAGTTCGTTCCCTCAAGATGTTCTCAAATTTAT GCAAATCAGCTCGAGCCGATGCTCCTGCTGCCTGTTTTGAACGGTTTTTGGAGTTCCATAAAGATATTGTACAATCAGTT AGTGAAATGATGTCCACTCAAGCAGCTACTTTAGCTTCAGAATTGGCTCAGAAATCAGATAAACAACCTGAAGAAGAATC ACATATTTTACATGAAGTTGCGCAGAATTCCATGGAGCAATCCGGGAACTCAGAATCAAACTTGTCAAAGAGGAGGGGTG CTTTGAGCAAGTCAATGGCTGCCATTCCTGAAAGACATGAGCACAAAACAAGTTGTGGGAAGCTCCTAAGATCATCAAGT ACGAGCCAAAAGGAAAGTTTGGAGAAGAAAGGTTCATCTTCGGTTTCAAAAATGACACTAGAACCTGTTGTCGAAAATGA TGAGAATAAGAAACCAGCATCATGCAGCTTGAGCAGCACAATCAAACTGGGAAAGCAGATTGAAACAGAAGCTGGAAATT GGTTCATGGAATTCATTGAGAAGGCCTTGGAAGCAGGTTTGAAGAAAACAAAGGAAGCATCAGGTGGGGATGTTCGGAAA GTTCCCCAGTCTCTCATACTAAAAGTTATGAACTGGGTTGAGGTTGAACAGTTCCACAGTACCAAGCGGCCTAGACATCC TAAAGCAGCACAGATTGCTAGGAAATTAAGAATCAAGATGAAAAATCCTTGA
Protein sequence (LotjaGi2g1v0320100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLAPGILMKLLNGLNTGVKPTSEHRSSLLQVTDIVPADLDEKSLFPKQGFYIKVSDSSHSIYAALPSDQDDIVFSNKM QLGQFIYVDRLEPGSPVPVLKGAKPLPGRHPLVGTPEPLMGLRDKKEAPQPPRGGGATPQQQQQQPIRRGSWGTAGKNLD ENNVSFSSPMVFKPVNLDFDQFSAAAATPVRDRCAVPSSPLIRGRVGTGTGTPVSGVRCSVGGGLLAKMTDFKGDSPALL RKSCAVSSSNARFSRSRSVCEREPVTPFKSAEKKSCTPPPRLRNARVAFIGGDAAQNQDSNVPSHPKSLSTTNSAFDNSN NQSLPKNLPGNLSLLGKEAVQQREVAQKIALQALRDASATEAVVRSLKMFSNLCKSARADAPAACFERFLEFHKDIVQSV SEMMSTQAATLASELAQKSDKQPEEESHILHEVAQNSMEQSGNSESNLSKRRGALSKSMAAIPERHEHKTSCGKLLRSSS TSQKESLEKKGSSSVSKMTLEPVVENDENKKPASCSLSSTIKLGKQIETEAGNWFMEFIEKALEAGLKKTKEASGGDVRK VPQSLILKVMNWVEVEQFHSTKRPRHPKAAQIARKLRIKMKNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 603 | 603 | 9.3E-220 | ||
| PANTHER | 1 | 603 | 603 | 9.3E-220 | – | |
| Pfam | 4 | 126 | 123 | 2.8E-58 | ||
| MobiDBLite | 99 | 160 | 62 | - | – | |
| MobiDBLite | 135 | 160 | 26 | - | – | |
| Pfam | 237 | 562 | 326 | 4.2E-30 | ||
| MobiDBLite | 294 | 324 | 31 | - | – | |
| MobiDBLite | 433 | 453 | 21 | - | – | |
| MobiDBLite | 433 | 514 | 82 | - | – | |
| MobiDBLite | 474 | 500 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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