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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0320300 |
| Transcript ID | LotjaGi2g1v0320300.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleic acid-binding, OB-fold-like protein; TAIR: AT1G23750.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440; TrEMBL-Plants: tr|I3SF15|I3SF15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0320300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79526352..79531810) extracted from Lotus japonicus Gifu genome v1.2.
CGTCATTTCAATAGCTTTGTCCTAGTTTAAAACGCTCTGATGGGTCTTACTTCTCATCTCTTGACGTATGCTATAGAAAC TAGTTTTCTCATATTTAGTTGTGTTAGGTATTTTGTATGGGTGTTTTTTTTAACCTCTTATACAAAAATAAAATCATATA TCTTATCTATTAATCTCTATCTTTTCCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTATCTGATACCGAAGAAAAAGA GTATAATGAGAAACACGAGTCCAGTCATTCGTTTATCTCTGTCTCCTTAAAACTCGATCTTACGCTTGTGTTTCAGTTTC AGTTTCAGTTTCAGTTTCAGTTTCGGTTTCATCTCTTTCCATCACTTCCATCTCCAGGTGATGTTCTCCTTTACTCAACC ACTTCGTTTCATTGCCCCGATTTTCCAACCTCATTTGCGATTTTCATATTGAAAAAATTCAACTTTTTTCTTGTGTGGTT CAAGTTCCAATCATGAGATTTTTTTTTTTTTTTTTTTAATTTGATTTGTATCTGAATTTCTGAAGCGGAAAATTAGTATG GATTTGGATCTTATTGTTATCAATATTTTCCCCTTGCTTTGACCTAGGAATATTAAAAAGTTCACAACTTTCTTACACCC TTTTGGTGGGGTTAGTGCTAAATGCATGCTCTGTGATACTGTAATTGATATGGATTGAGTTTAGTATTTGTACTTTTAGT TCATGTTGGATAAAATTGGTTTTGCCTTGTCTGAAAATTTTGGATAAAGATGTATAGTGATGATTCATATTCAAAATTTA TGTACAAGGAAACAAGTAGTGGGCACCAAACCTTCAATTTTTACTTGTGTATTAAGATCTTATATAGGCATAGAAAGTTC TAGTTTTTTTGCTGTAATGGAGATTCTTGTGGTTTTGGGGATTTGTAGGGCATTCAACATGGCAGATTCAAAACCAGGAT TGAGGAAGCCGGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACACTTTAACCTTGAAGGTGGTCAAT ACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTTCTCAACCCCGTCAAATGCGACTTGCTGAGTGTTTGGTTGGTGA TGAGACTGGAATGGTCATATTCACTGCAAGAAATGATCAAGGTGTGTTACTTTGATTCATGAAGTTATCCTTTACAAGTT TTCCTTACTGTATCATATTGTTGTTTTTGTCATCCGATTTTTACATTCTTGTTGAAGTTTTTTTTTGGGGCTGTGGGAAG GGCATTCGTTTGTTATTCTGCACAGGGTGTTCACAGTTCATATGTCAAATGCAGTGTTGTCAAATAGCGGTTATAGCGTA GCTCTTTTTTGGCTTACCGCTAATCCACTATTACCCGCTATTTGCCGCTTTTTCCTGCTTTTCCCGCTATTTTCCGCTTT AAGAAGTTGGAAATAGCGGAATTTTGGCTTCCTGCTATAGTCCGCGATTAACAACAGTGGTCAAGTGTTTTATTTTGTAC TGTGAACCAAAAGGAAAGTAAGGTGAATCGAATTGAATCGTTGTATATATATATATATATATATATATATATATATATAT ATAGACATTTCTTAAAAGTACTATAAAGAATATATGCTAATAAAATGAAAGGAACTATTTAAATTAGTTGCTTTAACCCA AGCTTAAAAATGAAATAGGAGTTCCTAGACTCCTAGCTAGATAAGAAATCATTCAATATCATCTTCTAGCACCGAAGGAT GTTCGCTAGTGAAGGATGGTTGTTGGAGAAGGGGATAGTCTTTGGAGCTACAAGGTGAGAGGGAACGGTGAATAGTGAGA AGAGGGCAAAGACGGTCCGATTTGCAATTCTGAATAAAGAATGAAGCTTCGTTCTTTCTAGTTTGATCTAAAATGGCCCT GGAAAGTCCTAAAATGCCCCTAAAAAGGTTCCCCAATTGTCAAAGAATCTGAGACACAGAAGCATTGAAGAGGATGGATA ATGACAAAGCAGCTTGGCTAGATATACCTATTGAGGTATGAAAGGGGCTAGGATAGAAAGGTATACAATGGCTCACAAGG TTGTTCAATGACAGTGATTAGTAAGGTCTAATAGCACCCTGAATGACTGAGAAGTACTATCCCTTCTTTCAGAACAAATT TGATGATCAAAATTGTGCTAATTATAGGGAGATTAGGATCATGAGCCACACAATGAAGCTTTAAGAGAGTAATCAATTAC AGATTGAGACAAGAGAAACTTATTACAAAAAATCAATTTGGTTTTATGCCAAGGAGGTCGACCACAGAAACTATATACTT GCTGTGAAGATTATGGAGTGATATTGGAGGAATAAAAAGATTAACACATGGTTTTCATTGATTTGAAAGACAGGACAGAA TTCATGAAGAGGTTTTGTGGAAGGCTACGGAGAAGAAAGGAGTCAGCATTGGACACATTCAAGCAATTAAGATATGTATA AGGAGGTCATGAGTAGTGTGAGAACAAAAGGTTTCAATTATAGGTTTGTACCAATGGTCAACATTGAGTCTATTGTTTTA TTTTGGTCTAGATTTGCTAACTAAACATATTCAAGAAATGTTATCACCATATATACTTTTTTCATGTGTCTTGGAGTTAT ACTAAAGATATGGAGAAAACCTTGGAAGCACAAAACTTTCTCTTAAGTAGTAGTAAAACAGAAGTATATGTAATACGAGT TTAACATGAGACACAAGAATTTTAGCTTAGATACACTGGTCTTATGGTTTAATTATCTTGGATCCATCATACAAAATGAT GGTGAAATAGAGATGTCAACCATAAGATTCGAGCAAGGTGGATAAAATGGAGGAATGCTTTGGTGTCTTGTGTTACAGAA AGGTACCACTTAAGGTTAAAGGAAGATTTTACCACAAAACTATAAGACATGCAATGTTGTGAACGACTGAATGTTGGTGT GCCGACAAAAAAGCTTAGCATTGATAATAATGCTATGATGGATGAATGTCCACATATGACAAGATAGGATTAGGAATGAG ATGATTAGAGAGAAAATTGATAGCTCCAATTGAAGACAATATGGTTGAATCTCGTCTTGGGTGATTTCAAGTTTAGACAT GTGTAGAGAAGACCCGTAGAATCTAATAATTAGAGATAGAGGCCGAAGGAACTCTATAAGTTAAACTAGTAGGAGAAATT TGGATACGATTCATGCACTTGACCTCACATAGTAGGAAAAAGGCTTTGGTTGTTGATCATTGGCATTTTAGGCCATGAGA TAAGACTTGGTTGTTATTTTTGTTGGTCTGAATGATTATGTGAAATAAGAGCTTATTGAATTTTTTGTGATTGTCTGAAT TCATTATGAAAATTAAGAAGGGTGTATAGTTCACTAATACATTCTGAATTGGAGGGTTTTTTTTTTTTTTTTAAAAAGCC AAAGCGTATTAAATGCTAGCAGAAGGGTTGCTAGCATTTACTTCGTGTCATGTACTTCGTTTACAAATACTTTAGTACTT TTGTCAGAGTACTAAGTTTGATCTGTCCGGCATATAGGCACAAATGCTCTGGGTTGTACCCTGACAAAGAATTGCTGTAA TGGTTGAATTGGGTCTAAAATAGTGTAACCTGGAAAAAAAATGTGAATTTGTGCTGGTTTCTATTGATCAGCTGTATCTC GATTCGTGTCCTTCTGAATACATAACAAGTACTGGTTGAAGAATCCCCCCCCCTAAGAGAGATAGATAAGAGAATTAGAA AAAAAAGGAACCCTCTTTCTATGCTAATGCTAAGCAATGATGCAAATGCAAGATTGCCCAGATTGTCTGCTCTTAAATTT GAAAATATATTTATCCTACTTTAGCTTAGACTCTGGCTGAGAAGCGCGCAATCAAAAGAAAAAAGATATTAACAGATGTG AAGTTTAAAATGAGTTGCAAGCATTCAGTGGTAGTTTGTACCTACTGATTTCTTTCTTTTACATCCAGGCAGTATCAGTT CACATACAAAAAGGCCTCGCTTCGTACTAAAAGTGTTCTAAAACCGTTGCAGACTTGCTGTAACTGCTAGTAAATAAAGT TCAATGTTCTTATATGATACTACACTGGTCATAAAAGTAGAGAATTTTATCTTTCAAAAAAAGTAAAAAGGGAGAACTTA AATTTGGCAAGTCTTAACCTATCATGTGGTGTGGAATGCTCAAAGAGTGGTTATTGGCTTAATCATATATAGGAACTGAT ATTTTTACATAGAAACAACAGAGACTAGCTCCTAAAAAAACAGCAATATGTTGACAACAGACGATGAATTGTGATCCAAA CACGTTCCTTTCCCGTCGCCTCGAGTGATGCCTAACCTCTCTTTCTCTCCTTTTAATTATTTTCTCTAACAAAAATCACA CCTTCCCTGCTTTTCCCTGCCATGTGGGAGTTCTGTTATTTTAAGAGGAAAGTTCTCTTTACCACCAAACTGTCCATGGT GGTCTAGTGCCTATGGCATTGATTCCTATATGCCTATTTCATCAATTGTTCTGTTTAATGAAGTTCCATGTTTGTTGTAG ATGACAAATTTTAAATAATATTTTTGATGTAGAATTTTCAAATTAGATTGATATGCAAACAATCTTTCTGATATAATTTA AGATGTTAAAATGTGATTATTTAAGTAGATGGCATCCTAGATTTATCTCCTTGCCCATGAATGTTGTTTGTTTACCTTTT CACAATATCTAGAGTTTAGCAGTATTACTTAACGTTTATAAACACTTTCTTTGGTCCCAACTTCTTTTCAGTGGATTTGA TGAAGGAGGGCAGCACTGTAGTCATGCGGAATGCCAAAATTGACATGTACAAAGGATCAATGAGACTCGCTGTGGACAAG TGGGGCCGTGTTGAGGTCGCAGAACCTGCTAGTTTCACTGTTAAGGAAGATAATAACTTGTCCCTGATTGAGTACGAGCT GGTGAATGTTGTGGAATGACTTGCTGGACACTCTGAAAATTGTGCTGTGTTCTAATAAAAAACTCAAAACAAATCAAGAA AATAAATCTACTTTTGTTCATGGGACATTTTCTGATCATGCTCATCGTCATTCACCTTGCTAGGAATAGAAATTTGTGTA GCCAAGCAGTACCAGCAGTTGCTTTTAACTGTTGCGACAGACTCAGATGAATCTTGAAGCTCATGCTCTGAACAGATGTG GCTATAACTTGTAATAGGAAGAAGAAAATGGGAACTAGCTTTTCCAGATCATGCTTTTTGTTATGCTATCTATTTATAGT TTTATATTTGGATTTAGTACATCTTCCTCCTACTTGGATTATATGTATCAGAATATTTTGGCAGGTGAATGTTTATCCTT ATTTTATTTCTTTGTTCAATCTCACTCTTCATCGTGAAATCCTCGATTATAGAAACATCAATAAATTGTGAAAAAATTTA AATACGAGTGCAGAAGGGA
CDS sequence (LotjaGi2g1v0320300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATTCAAAACCAGGATTGAGGAAGCCGGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACAC TTTAACCTTGAAGGTGGTCAATACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTTCTCAACCCCGTCAAATGCGAC TTGCTGAGTGTTTGGTTGGTGATGAGACTGGAATGGTCATATTCACTGCAAGAAATGATCAAGTGGATTTGATGAAGGAG GGCAGCACTGTAGTCATGCGGAATGCCAAAATTGACATGTACAAAGGATCAATGAGACTCGCTGTGGACAAGTGGGGCCG TGTTGAGGTCGCAGAACCTGCTAGTTTCACTGTTAAGGAAGATAATAACTTGTCCCTGATTGAGTACGAGCTGGTGAATG TTGTGGAATGA
Protein sequence (LotjaGi2g1v0320300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSKPGLRKPVFTKVDQLRPGTSGHTLTLKVVNTKMVVQKGRADGSQPRQMRLAECLVGDETGMVIFTARNDQVDLMKE GSTVVMRNAKIDMYKGSMRLAVDKWGRVEVAEPASFTVKEDNNLSLIEYELVNVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 1.2E-80 | – | |
| PANTHER | 1 | 135 | 135 | 1.2E-80 | – | |
| SUPERFAMILY | 7 | 134 | 128 | 1.89E-38 | ||
| Gene3D | 23 | 126 | 104 | 8.1E-37 | – | |
| CDD | 27 | 110 | 84 | 1.2059E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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