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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0320300 |
Transcript ID | LotjaGi2g1v0320300.6 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Nucleic acid-binding, OB-fold-like protein; TAIR: AT1G23750.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440; TrEMBL-Plants: tr|I3SF15|I3SF15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0320300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79526832..79530872) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGATTCAAAACCAGGATTGAGGAAGCCGGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACAC TTTAACCTTGAAGGTGGTCAATACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTTCTCAACCCCGTCAAATGCGAC TTGCTGAGTGTTTGGTTGGTGATGAGACTGGAATGGTCATATTCACTGCAAGAAATGATCAAGGTGTGTTACTTTGATTC ATGAAGTTATCCTTTACAAGTTTTCCTTACTGTATCATATTGTTGTTTTTGTCATCCGATTTTTACATTCTTGTTGAAGT TTTTTTTTGGGGCTGTGGGAAGGGCATTCGTTTGTTATTCTGCACAGGGTGTTCACAGTTCATATGTCAAATGCAGTGTT GTCAAATAGCGGTTATAGCGTAGCTCTTTTTTGGCTTACCGCTAATCCACTATTACCCGCTATTTGCCGCTTTTTCCTGC TTTTCCCGCTATTTTCCGCTTTAAGAAGTTGGAAATAGCGGAATTTTGGCTTCCTGCTATAGTCCGCGATTAACAACAGT GGTCAAGTGTTTTATTTTGTACTGTGAACCAAAAGGAAAGTAAGGTGAATCGAATTGAATCGTTGTATATATATATATAT ATATATATATATATATATATATATAGACATTTCTTAAAAGTACTATAAAGAATATATGCTAATAAAATGAAAGGAACTAT TTAAATTAGTTGCTTTAACCCAAGCTTAAAAATGAAATAGGAGTTCCTAGACTCCTAGCTAGATAAGAAATCATTCAATA TCATCTTCTAGCACCGAAGGATGTTCGCTAGTGAAGGATGGTTGTTGGAGAAGGGGATAGTCTTTGGAGCTACAAGGTGA GAGGGAACGGTGAATAGTGAGAAGAGGGCAAAGACGGTCCGATTTGCAATTCTGAATAAAGAATGAAGCTTCGTTCTTTC TAGTTTGATCTAAAATGGCCCTGGAAAGTCCTAAAATGCCCCTAAAAAGGTTCCCCAATTGTCAAAGAATCTGAGACACA GAAGCATTGAAGAGGATGGATAATGACAAAGCAGCTTGGCTAGATATACCTATTGAGGTATGAAAGGGGCTAGGATAGAA AGGTATACAATGGCTCACAAGGTTGTTCAATGACAGTGATTAGTAAGGTCTAATAGCACCCTGAATGACTGAGAAGTACT ATCCCTTCTTTCAGAACAAATTTGATGATCAAAATTGTGCTAATTATAGGGAGATTAGGATCATGAGCCACACAATGAAG CTTTAAGAGAGTAATCAATTACAGATTGAGACAAGAGAAACTTATTACAAAAAATCAATTTGGTTTTATGCCAAGGAGGT CGACCACAGAAACTATATACTTGCTGTGAAGATTATGGAGTGATATTGGAGGAATAAAAAGATTAACACATGGTTTTCAT TGATTTGAAAGACAGGACAGAATTCATGAAGAGGTTTTGTGGAAGGCTACGGAGAAGAAAGGAGTCAGCATTGGACACAT TCAAGCAATTAAGATATGTATAAGGAGGTCATGAGTAGTGTGAGAACAAAAGGTTTCAATTATAGGTTTGTACCAATGGT CAACATTGAGTCTATTGTTTTATTTTGGTCTAGATTTGCTAACTAAACATATTCAAGAAATGTTATCACCATATATACTT TTTTCATGTGTCTTGGAGTTATACTAAAGATATGGAGAAAACCTTGGAAGCACAAAACTTTCTCTTAAGTAGTAGTAAAA CAGAAGTATATGTAATACGAGTTTAACATGAGACACAAGAATTTTAGCTTAGATACACTGGTCTTATGGTTTAATTATCT TGGATCCATCATACAAAATGATGGTGAAATAGAGATGTCAACCATAAGATTCGAGCAAGGTGGATAAAATGGAGGAATGC TTTGGTGTCTTGTGTTACAGAAAGGTACCACTTAAGGTTAAAGGAAGATTTTACCACAAAACTATAAGACATGCAATGTT GTGAACGACTGAATGTTGGTGTGCCGACAAAAAAGCTTAGCATTGATAATAATGCTATGATGGATGAATGTCCACATATG ACAAGATAGGATTAGGAATGAGATGATTAGAGAGAAAATTGATAGCTCCAATTGAAGACAATATGGTTGAATCTCGTCTT GGGTGATTTCAAGTTTAGACATGTGTAGAGAAGACCCGTAGAATCTAATAATTAGAGATAGAGGCCGAAGGAACTCTATA AGTTAAACTAGTAGGAGAAATTTGGATACGATTCATGCACTTGACCTCACATAGTAGGAAAAAGGCTTTGGTTGTTGATC ATTGGCATTTTAGGCCATGAGATAAGACTTGGTTGTTATTTTTGTTGGTCTGAATGATTATGTGAAATAAGAGCTTATTG AATTTTTTGTGATTGTCTGAATTCATTATGAAAATTAAGAAGGGTGTATAGTTCACTAATACATTCTGAATTGGAGGGTT TTTTTTTTTTTTTTAAAAAGCCAAAGCGTATTAAATGCTAGCAGAAGGGTTGCTAGCATTTACTTCGTGTCATGTACTTC GTTTACAAATACTTTAGTACTTTTGTCAGAGTACTAAGTTTGATCTGTCCGGCATATAGGCACAAATGCTCTGGGTTGTA CCCTGACAAAGAATTGCTGTAATGGTTGAATTGGGTCTAAAATAGTGTAACCTGGAAAAAAAATGTGAATTTGTGCTGGT TTCTATTGATCAGCTGTATCTCGATTCGTGTCCTTCTGAATACATAACAAGTACTGGTTGAAGAATCCCCCCCCCTAAGA GAGATAGATAAGAGAATTAGAAAAAAAAGGAACCCTCTTTCTATGCTAATGCTAAGCAATGATGCAAATGCAAGATTGCC CAGATTGTCTGCTCTTAAATTTGAAAATATATTTATCCTACTTTAGCTTAGACTCTGGCTGAGAAGCGCGCAATCAAAAG AAAAAAGATATTAACAGATGTGAAGTTTAAAATGAGTTGCAAGCATTCAGTGGTAGTTTGTACCTACTGATTTCTTTCTT TTACATCCAGGCAGTATCAGTTCACATACAAAAAGGCCTCGCTTCGTACTAAAAGTGTTCTAAAACCGTTGCAGACTTGC TGTAACTGCTAGTAAATAAAGTTCAATGTTCTTATATGATACTACACTGGTCATAAAAGTAGAGAATTTTATCTTTCAAA AAAAGTAAAAAGGGAGAACTTAAATTTGGCAAGTCTTAACCTATCATGTGGTGTGGAATGCTCAAAGAGTGGTTATTGGC TTAATCATATATAGGAACTGATATTTTTACATAGAAACAACAGAGACTAGCTCCTAAAAAAACAGCAATATGTTGACAAC AGACGATGAATTGTGATCCAAACACGTTCCTTTCCCGTCGCCTCGAGTGATGCCTAACCTCTCTTTCTCTCCTTTTAATT ATTTTCTCTAACAAAAATCACACCTTCCCTGCTTTTCCCTGCCATGTGGGAGTTCTGTTATTTTAAGAGGAAAGTTCTCT TTACCACCAAACTGTCCATGGTGGTCTAGTGCCTATGGCATTGATTCCTATATGCCTATTTCATCAATTGTTCTGTTTAA TGAAGTTCCATGTTTGTTGTAGATGACAAATTTTAAATAATATTTTTGATGTAGAATTTTCAAATTAGATTGATATGCAA ACAATCTTTCTGATATAATTTAAGATGTTAAAATGTGATTATTTAAGTAGATGGCATCCTAGATTTATCTCCTTGCCCAT GAATGTTGTTTGTTTACCTTTTCACAATATCTAGAGTTTAGCAGTATTACTTAACGTTTATAAACACTTTCTTTGGTCCC AACTTCTTTTCAGTGGATTTGATGAAGGAGGGCAGCACTGTAGTCATGCGGAATGCCAAAATTGACATGTACAAAGGATC AATGAGACTCGCTGTGGACAAGTGGGGCCGTGTTGAGGTCGCAGAACCTGCTAGTTTCACTGTTAAGGAAGATAATAACT TGTCCCTGATTGAGTACGAGCTGGTGAATGTTGTGGAATGA
CDS sequence (LotjaGi2g1v0320300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATTCAAAACCAGGATTGAGGAAGCCGGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACAC TTTAACCTTGAAGGTGGTCAATACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTTCTCAACCCCGTCAAATGCGAC TTGCTGAGTGTTTGGTTGGTGATGAGACTGGAATGGTCATATTCACTGCAAGAAATGATCAAGTGGATTTGATGAAGGAG GGCAGCACTGTAGTCATGCGGAATGCCAAAATTGACATGTACAAAGGATCAATGAGACTCGCTGTGGACAAGTGGGGCCG TGTTGAGGTCGCAGAACCTGCTAGTTTCACTGTTAAGGAAGATAATAACTTGTCCCTGATTGAGTACGAGCTGGTGAATG TTGTGGAATGA
Protein sequence (LotjaGi2g1v0320300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSKPGLRKPVFTKVDQLRPGTSGHTLTLKVVNTKMVVQKGRADGSQPRQMRLAECLVGDETGMVIFTARNDQVDLMKE GSTVVMRNAKIDMYKGSMRLAVDKWGRVEVAEPASFTVKEDNNLSLIEYELVNVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 135 | 135 | 1.2E-80 | – | |
PANTHER | 1 | 135 | 135 | 1.2E-80 | – | |
SUPERFAMILY | 7 | 134 | 128 | 1.89E-38 | ||
Gene3D | 23 | 126 | 104 | 8.1E-37 | – | |
CDD | 27 | 110 | 84 | 1.2059E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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