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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0320300 |
| Transcript ID | LotjaGi2g1v0320300.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleic acid-binding, OB-fold-like protein; TAIR: AT1G23750.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440; TrEMBL-Plants: tr|I3SF15|I3SF15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0320300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79533741..79536256) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGATTCAAAGCCCGGATTGAGGAAGCCTGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACAC TTTAACCTTGAAGGTGGTCAATACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTGCTCAATCCCGTCAAATGCGAC TTGCTGAATGTTTGGTTGGTGATGAGACTGGAATGATCATATTCACTGCTAGAAATGATCAAGGTATGTGCATGTTGTGA CTTTGGTTCATTAAGTTATCCTTTACGAGTTTTCCTTCTGTTGTTATTGTCATCATATTTTTACGTTGTTGTTGAACTTT TTTTTTGGGGGGGACTGTAGGAAGGGCATTCATTTATTATTCTGCACAAGGTGGTCATAGTTCATATGTCAAGTGTTTTA TTTTGTATTGTGAACCAAAAGGATGATTTGTAAGGTGAATCGAATTGAATCATTGTAAATATATAACGACATTTCTTAAA AATACTATAAAGAATATATGCCAATAAAATGAAAGAAAATATTTAAAATAGTTGCTTTAACCCAAATTTACCTTTATTAT TGCATATGGCCTTCGATATAATGACGTTAACAGTGATAACAATAACGATAACCATCACCATCAAGCCTTTTTGCTCTAGG TGGGGTTGGCTGCATGAATCATGGTTTGCCATAGAGTTCTTCATGTATTAAGTTTAAAGATATGTTGTTTGCCTCTAAAT ATCTTTTCATGGTTTAATGCATCATTGTAATAAGTTTTACACTAATGTAGTAAAAAGTAAATTACCAAATTTCTATCTAG TAGGAGTTGAATTTGGGTAGTTGATGGTTTTGTATTTTTCTGGGTTTTAGACCCACGAAGGTCCTATTTGACACATCCAT AACATTTTGTAGCAATACACTACAGCCATATAAACTTTTTGCATCAAGTTTTTATAGAAGTCAAAGAAAAAAAAGAAATG TATCTTTTGCAGGTTTAGCATTTGTGAACCAATCTAAGATCTCTTGACTAAATATGTGGCAATATTCAGTGTAACAGCAT TCGGTAACCTTAAGGTGATCTTTGGATGTTACTCTAATGCACAGTGGAATGGAGGAATAAGTTATCATTCCCTTGTTTGG GTATTTTAATGATTGAGTGGGTAAAAAGACTTGTTCCATCTCATTCCACCTGTATTGAGGGGAAGAATGAGTGAATATTG AATGGAATGCACCCCTTAGTGTTCATTTTCATTTCATCCTATTTTAAACAATCCCGGAACCTATTATGACTCTATTCTCA CCATTTCACCCCTTTCCATCACTGTAAAACATAACCTAAAAGTTATCATAAGAGATAAGACCTTACACATCTAGGTTTGG AAGAAAAAGTACAAAAAGATGATAAAGCTAGTTGTATCATACTATCATGCGATCATGCATATCCAATTTGGGGCTTTTCA GTTCAACCCAATGGCAAAGAGCCAAAAGAGAAGGAAATTTCTGAATAGCTTGAATCTAGTGATTCTCTTGTAAGCAGAAA ATCACATTGGTTCATTAATCTACGCTTCAGAGCCTCCTCCTAATTCATCCCTTTGATTAATGTTTTTGGTTCTGGTAGGA GTGTTCCAATTTTCATATACTATTACTTATATATGGAAATTTGGAAATCAAATGGATATCATAATTTGAAATAGCGTGAG ACAATGGATTTTATAAAGGTTCATCTGTTGTATAGTAAATAATATTAATCATGCCAAATAATATAGAATCTCAATTAATA GGATTTTGATGCTACTTTGTCCTATTAATATCGATTTTAGTGTACAGTGTACACTAATGTTTGTATGATAATGTTAAACC TTTGTGGATATGATTGCTCTAATCCATACACATTCCCTTTCCCGTTGCCTCGAGTGATGCCTACCTCCCCTATGCCTCTC CTTTTCTCCTTTTAATTATTTTCTCTAACAAAAATCACACCTTCCCTGCTTCTCCCTGCCATGTGGGAGTTCTGTTATTC TCAGAGTGAATATTCTCTTTACCACTATACTGTCCATGTGGTCAGCTAGTGCCTATGGCATTGATCCATGCCTATTTAAT CAGTTGTTCTGTTAAATGAAGTTTTAAATAATATTTTTGATGTATAATTTTCAAATTAGATTGATATAGAAACAATCTTT CTGATATAATTAAAGCGGTTGATATGTGATTATTTAAAGTAGATTACATCCTAGATTTGTCTCTTCGCCCATGAATGTTG TTTGCTTATCCTTTCACAACATCTACAGTTCAGCAGTATTTTTGAAAACGTTTATAAACACTTTCCTTTGGTTCCAACTT CTTTTCAGTGGATTTGATGAAAGAGGGCAGCACTGTAGTCATGCGCAATGCCAAAATTGACATGTACAAAGGATCAATGA GACTCGCTGTGGACAAGTGGGGCCGTGTTGAGGTCGCAGGACCTGCTAGTTTCACTGTTAAGGAAGATAATAACTTGTCC CTGATTGAGTACGAGCTGGTGAATGTTGTGGAATGA
CDS sequence (LotjaGi2g1v0320300.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATTCAAAGCCCGGATTGAGGAAGCCTGTGTTTACCAAGGTTGATCAGCTTCGCCCAGGGACCAGTGGGCACAC TTTAACCTTGAAGGTGGTCAATACTAAGATGGTGGTGCAAAAAGGTCGTGCTGATGGTGCTCAATCCCGTCAAATGCGAC TTGCTGAATGTTTGGTTGGTGATGAGACTGGAATGATCATATTCACTGCTAGAAATGATCAAGTGGATTTGATGAAAGAG GGCAGCACTGTAGTCATGCGCAATGCCAAAATTGACATGTACAAAGGATCAATGAGACTCGCTGTGGACAAGTGGGGCCG TGTTGAGGTCGCAGGACCTGCTAGTTTCACTGTTAAGGAAGATAATAACTTGTCCCTGATTGAGTACGAGCTGGTGAATG TTGTGGAATGA
Protein sequence (LotjaGi2g1v0320300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSKPGLRKPVFTKVDQLRPGTSGHTLTLKVVNTKMVVQKGRADGAQSRQMRLAECLVGDETGMIIFTARNDQVDLMKE GSTVVMRNAKIDMYKGSMRLAVDKWGRVEVAGPASFTVKEDNNLSLIEYELVNVVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 9.2E-81 | – | |
| PANTHER | 1 | 135 | 135 | 9.2E-81 | – | |
| SUPERFAMILY | 7 | 134 | 128 | 6.57E-39 | ||
| Gene3D | 23 | 126 | 104 | 6.3E-37 | – | |
| CDD | 27 | 110 | 84 | 5.9747E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0320300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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