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LotjaGi2g1v0326500.3

Overview

Field Value
Gene ID LotjaGi2g1v0326500
Transcript ID LotjaGi2g1v0326500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial carrier protein; TAIR: AT4G24570.1 dicarboxylate carrier 2; Swiss-Prot: sp|Q9SB52|PUMP4_ARATH Mitochondrial uncoupling protein 4; TrEMBL-Plants: tr|A0A1J7HCM9|A0A1J7HCM9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0326500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:80189746..80190720) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGCCTTAAAGGTTTCGCAGAAGGAGGCATCGCTTCCATCATCGCCGGTTGCTCCACCCACCCTCTAGATCTCATCAA GGTCCGCATGCAGCTCCAGGGTGAAGCCAACGCTGCCCCTAAACCGGTTCAACAACTCCGACCCGCTCTCGCCTTCCAAA ACGGTTCAACCATCCACGTGGCGGCGCATCCACATTCTCCTCCGCCGCCGCCGATGCCACAACCCCGCGTGGGCCCCATT TCTGTTGGCGTCCGTCTTGTTCAACAAGAAGGCCTCCGCGCACTCTTCTCCGGCGTCTCCGCCACCGTCCTCCGTCAGAT GCTGTACTCCACCACCCGCATGGGCCTCTACGACATCCTCAAGCAGAAGTGGTCCAACGGCGGAAACATGCCGCTCTCAC GCAAGATCGAGGCCGGACTCATCGCCGGTGGAATCGGCGCCGCTGTTGGCAACCCCGCCGACGTCGCCATGGTGCGAATG CAGGCCGACGGGAGGCTCCCGGCGGCGCAGCGCCGGAACTACTCATCTGTAGTCGACGCCATCACCAGGATGGCGAAGCA GGAGGGAGTCACCAGCCTCTGGCGCGGTTCATCGCTGACTGTGAACCGCGCGATGCTGGTGACGGCGTCGCAGCTGGCGT CGTACGACCAGTTCAAGGAGATGATTCTGGAGAAGGGTTTGATGCGTGACGGGCTTGGGACCCACGTGACGGCGAGTTTC GCGGCGGGGTTTGTGGCGGCGGTTGCGTCGAACCCGGTTGATGTGATTAAGACGAGGGTGATGAACATGAAGGTGGAGCC TGGGGCGGAGCCGCCGTACGCCGGCGCGTTGGACTGTGCCTTGAAGACTGTGCGTGCTGAGGGACCCATGGCTCTCTATA AGGGATTCATACCTACAATTTCTAGGCAGGGACCCTTCACCGTGGTGCTGTTCGTGACATTGGAACAGGTCCGCAAGATG TTCAAGGATTACTAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0326500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCCTTAAAGGTTTCGCAGAAGGAGGCATCGCTTCCATCATCGCCGGTTGCTCCACCCACCCTCTAGATCTCATCAA GGTCCGCATGCAGCTCCAGGGTGAAGCCAACGGTTCAACCATCCACGTGGCGGCGCATCCACATTCTCCTCCGCCGCCGC CGATGCCACAACCCCGCGTGGGCCCCATTTCTGTTGGCGTCCGTCTTGTTCAACAAGAAGGCCTCCGCGCACTCTTCTCC GGCGTCTCCGCCACCGTCCTCCGTCAGATGCTGTACTCCACCACCCGCATGGGCCTCTACGACATCCTCAAGCAGAAGTG GTCCAACGGCGGAAACATGCCGCTCTCACGCAAGATCGAGGCCGGACTCATCGCCGGTGGAATCGGCGCCGCTGTTGGCA ACCCCGCCGACGTCGCCATGGTGCGAATGCAGGCCGACGGGAGGCTCCCGGCGGCGCAGCGCCGGAACTACTCATCTGTA GTCGACGCCATCACCAGGATGGCGAAGCAGGAGGGAGTCACCAGCCTCTGGCGCGGTTCATCGCTGACTGTGAACCGCGC GATGCTGGTGACGGCGTCGCAGCTGGCGTCGTACGACCAGTTCAAGGAGATGATTCTGGAGAAGGGTTTGATGCGTGACG GGCTTGGGACCCACGTGACGGCGAGTTTCGCGGCGGGGTTTGTGGCGGCGGTTGCGTCGAACCCGGTTGATGTGATTAAG ACGAGGGTGATGAACATGAAGGTGGAGCCTGGGGCGGAGCCGCCGTACGCCGGCGCGTTGGACTGTGCCTTGAAGACTGT GCGTGCTGAGGGACCCATGGCTCTCTATAAGGGATTCATACCTACAATTTCTAGGCAGGGACCCTTCACCGTGGTGCTGT TCGTGACATTGGAACAGGTCCGCAAGATGTTCAAGGATTACTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0326500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEANGSTIHVAAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFS GVSATVLRQMLYSTTRMGLYDILKQKWSNGGNMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQRRNYSSV VDAITRMAKQEGVTSLWRGSSLTVNRAMLVTASQLASYDQFKEMILEKGLMRDGLGTHVTASFAAGFVAAVASNPVDVIK TRVMNMKVEPGAEPPYAGALDCALKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKMFKDY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45618
1 307 307 7.8E-184 –
PANTHER
PTHR45618:SF23
1 307 307 7.8E-184 –
Gene3D
G3DSA:1.50.40.10
4 307 304 6.6E-90
IPR023395
ProSiteProfiles
PS50920
4 106 103 20.067
IPR018108
SUPERFAMILY
SSF103506
4 300 297 7.06E-75
IPR023395
Pfam
PF00153
6 107 102 6.1E-18
IPR018108
PRINTS
PR00784
100 112 13 2.8E-10
IPR002030
ProSiteProfiles
PS50920
113 204 92 25.216
IPR018108
Pfam
PF00153
114 207 94 4.2E-18
IPR018108
PRINTS
PR00784
167 184 18 2.8E-10
IPR002030
PRINTS
PR00784
210 228 19 2.8E-10
IPR002030
ProSiteProfiles
PS50920
213 303 91 26.675
IPR018108
TMHMM
TMhelix
214 236 23 - –
Pfam
PF00153
216 306 91 3.0E-19
IPR018108
PRINTS
PR00784
292 307 16 2.8E-10
IPR002030

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006839
Biological process Mitochondrial transport Transport of substances into, out of or within a mitochondrion.
Subterm of
GO:0031966
Cellular component Mitochondrial membrane Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0326500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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