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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0327100 |
| Transcript ID | LotjaGi2g1v0327100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT2G22540.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS; TrEMBL-Plants: tr|I3S8C9|I3S8C9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0327100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80251322..80255985) extracted from Lotus japonicus Gifu genome v1.2.
TGGGGAGATAAAGGGACATTTGTTTCGGTTTCGCTAGAAAAGGTTGTTTTCCCACAGTTGTTTCACTTCCACACTCTCTC TCCCTCACTCTGTCATTTGTTCATTGGTGGCTTTCATCTCAAAGCTGGAAAAACATATCACAAGCCAAACAGAGAACAGC AGCAAAACCAACATTCCAAATATCAACACACCTTCCCCTAATAAGGAGAGTTAAATCAGCCAAGTACAATCAATCCACCA CTCTCAACTTCCATCCCCACCAACTCCACATCGATCCTATCCCTCATCCTCATCAATCATCTTCTCTCAATATTCCAAAA AATTAATTTTATTTTCAATCTTTCCCTTACAGGATCTTGATCAATATCTCTTGATCAGTGAGTAGCTGCAGTTCTCAAAC CCATATTTAGCTAAATGCCTGCATATTTCTGCTAGCTATCACACTCTGCTTTCCCTTTTCTGCTTTTCTTCACACAGAAA TAGAAACTCACCTTCCATAAATAGTCAACGAATCAGCTTCTCTTTCACTTTGGTTGCTTTTGCCTTATCTTTTTTAGGTG GGTTTTGTTTTGTATCTTTGAATTATATGCTGGTTCATTCTCTGTGCTGTGTCTTTAATTAACTCTCAGTGTCACCAAAC AAAAAACTAAACTAAAGCTGTTTTCTTTCTTTTTCTGTTTTGTTTTTATTTCATAATGAGGATATAGATTAAGGTGAAAT GGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGACAAGTCACGTTCTCCAAGCGGCGCAGGGGGC TCTTCAAGAAAGCTGAAGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCCCTTGTAGTCTTCTCTTCCACTGGGAAGCTC TTCGAGTACTCCAACTTAAGGTCTTTCTCTTCTCTCTCTCTGGTTAATGGCGTGTTTGGAAATGGAAGCTGAAAAAATGA TTTATTTTCGTAAGTGTGTGTTTTGATTTCTGAGTCAGTTTCTAGGTCTAATGTAGTTGTATGGAAACTCAGTAAGTTTT CTTGTTTAGGTAATTAAGAAGTGATTTTGGAAATAATTGGTAGGAGTAGCTTTTGTGTAGTGAGAAATGATTCAGTAACC ATGAAAAGATAATCCAAATTAACATGCTTTGATACATTTTGTTGGGGTTGCTGTTCACTAACTGACCTAGTTGGTTTTCT GGATCTATTTGCTTTTTAAACTTCCTCATTTTGCTTGATGTCTTTGCTTGGTTTCACAAGTTTTGAGGTTGATGAAGAAA AAAAAATGTGTTGAGACAATTTCTGAAAATGCATTGTATTAGTAAGAAAATGTGTTGTCCGTTTGGTTTACGGTTTAAAA GTATGTAAACGGGATAATAACACATTTTTTTTCTTCATCGGAAAATGATAATAACACATTTTAAAACACTTTTTTGTTTG TTTCAAATAACAATGACCCCAGATGTGGCATTTTCTCCTTTTTTTTTTTTATGGATTTATGGAATGGGACAAATTTTGGG CACATAGTCATTACACTTTATGACCTCTGGAGCAAATAAAGGATTGTAGAAATGAGAGATACACATTTCTTAATGATTCT AATTTCTGAATTGAAGCTTATTAATCCTGTTATGTTGCTTCTTTGATGCACTTTGTTGGATATAGCGTAGATGCTTTGCT TTACATATACCTCAAGTGTTATACTGAGATAGTATAAGAACATGAGTTAGGCTATGTATAATACAACAATGAGTCTGAAT GAGGCAAGGAATCCAACATGACATTTATGATTAAAGAGTGATAAAGGAGTCATAATTAACATCAATTACAGAGGAGTATT CCGTATGAACCTACCCTATCCCAATATCCCCCTCCCTTCTGATTTCCGTTCATATTTGTGATGATAAGAGACTGTTTTCG GAGAATGTATTATTTGCTATCATTATAACAATTAGCCACATAATACTTTCAGCCTTGATGAAGGAAAAGTCTTGTAACCA CAAATTAAAGGACAAACTGTAAATGATGGAAACGTAATGAAGCAGTAAAAATTACTACCAACCCTTGATTATTAATTATT ACAGTAATTGTGGAGAGACCAGTTCAATAGTTCATTTCACCAACGCACAAGTTACCTTCATTATGACTGAGCGGCTTTTA CCTTCAAAAGCTTAAGAGTTTGTGTGCAAGTGATGGAATTAGGTGTGTACTTTTCTACTACAATGTAAAGGCCTACTTAA TGGGACAATTTGACCGGAACTAAAAATAAAAAAGAAAATATTGTTCCTTGTAATTTTTTTCTGGGGGTATTCCATATTGT GACTTAACTTTATTTTTTTTCTTATGAAGTATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTTGCAAA ACTGGAACAACCGTCTCTCGAGTTGCAGGTTGGTGGTACTTGTATATTCTGTATGGATTAGTGTTATTTTTCCTTATGTT AAGAATTTTATTAAAGAAATTAACTGAACGGGTACTCAAACCCAAATACTACAATCTAAGAACTGTCCAATACAGGAAAT TAAAAGAATTGCAAATTGTAATGCATTATTTATTTTTGTAATTCATCCAAAGTATAATATATATTTTCAGAACTTTTAAA GTTTTTTTTGTTTACTTTTTTAAACAAATAGAATTGAACTACATTAATTATTAAAAATATATAATTTATCACATATATTA ATTTAACAGAGAAATAGGAACTCATTGAGCTTGATATTTTTCTTGACTAGTATAATTAGACAACATATCATTAGTAAATC ATTTTATTATAGTAGCTAGTAGGAAATGAAATTCATCTTGTGTTTATAGAAGTATCATAAATAATAAATTATTGTGTGTA GAAATAAAATTAGTGCATGTTTGGATATATATCATGAAGATAAAATCATGATGGAAAACCACAAAATCTAAGCACCCTCA TTTTAACTTACCTATACTTACTCTAGATCCTCTTCCTTGCGTTCAATGCTTAGAGGAATAGGATGTCAAAATGTAAGGCC AATTGTTAATTGCATAAATGTATGTCTACTGCAGTTAGTTGAAAACAGCAACTGCTCCAGATTGAATAAGGAAGTTGCTG AGAAGAGTCGTCTATTAAGGTACAACTCTCACAATTTCTCAACCAATTCGTTTGTTGTGTTCATTGAAAACATTGCAATT AAATTAAAATTAAAATTAATATTACAGGCAGCTAAGAGGAGAGGATCTTCAAGGTTTAAATATTGAAGAATTACAACAAC TGGAGAGGTCCCTGGAAACTGGATTGGGGCGTGTAATCGAAAAGAAGGTCTTCAATTGTACTTTGTGGTTAACACAAGCC TAATTATTTTGCCTGATGAGTTTGTTTATATAATCAAATCTTTCTGCCTTTTCAGGGAGAGAAGATTATGAATGAGATCA ATGGTCTCCAAATAAAGGTTAGATAGAAACTACTGTATACCAATTTATCTTGTTTGTGAAGTTTCATTCATTTCTTTGTT ATCTCGATCGCCTAACTACGCAAAATAATCATAAAAGCTTAAGCTGTTGGTAAATGACTCCGAATGGTTTGATTTATAAC AATCTGCAGGGAAAGCAATTGATGGAGGAGAACGAACGGCTAAAGCGTCACGTGGCTGGCATGATTAGCACAGGCTTAAT GCATGGAGATACTGAGTCAGAATTGTTAGTTATGGAAGAAGGTCATTCTTCAGAGTCTGTTACTAACGTTTGTAACTCCA CTACTGGGCCTCCCTTAGAGGATGATAGCTCAGACACGTCGCTCAAACTGGGGTGAGTTCACTTTAAGCAGTTCACTAGT TGAGTCGTTAGTTTATTCACTAGTTATGTTATATTATATTTCTCACACATCATAGCGAAAACGCACTTTTGCTGGGATTG TATTTGTATATAGCGTTTATGTGTGTCTGCCCTTTCTTAATTTCTTGACGCTTTCATGAAATTTTTGCAGGCTTCCATAC TAAGGCTGAAGGAAAAGTGTGTGGAGTTAAACTTACAGGGCAAGATGAACAAATATTAATGTGAATGGTCTTTAGTGGAT TAATTGGTGGTATAGTACTTCTATATTAGTAATGACTTTTGGAGGTACGCGAGATATGTCATTGAGAAATTGATAAGATG TAATTATTTCCCAACTAATGTTCTAATTCGCATTATAATTAACCAGGACAATGTGGTATCCTTCCTTTTCATTTTATCCA AAATCAACTGTCTTATTTTTGCCTATTATGCTTTACATAGAACATAATGTCTCAGCATATTTTAAGTATTGATTATTAAA ATTAGTTTCTAATAAGATAAAACTTACATCAAATTCCTTGTATGCATTTCATATTTCGTATTTAGTTTTTTAAAATTTAA TATTAAAATCTTAATAAATTTGATTTAAGTTTTTCCCTTTTTAATGTGTTATTAGAAAATTTCCTCTTTATTGGCATGGA TAGAAATAGAAATGGGTGGAAATGAAATGTTTTAAAAATGAGGTGTGTATATATCATTGTTGTAGCATTGAGTATAGCTG ACTGATTATAAAAGGAGTTTGATTCCTTTCAATAAAATAAACCCATTTTTACTTAAACTCTCGATCTCCATGACCATGGC GTTTGTCTCTCTTCCTCCCTCGAC
CDS sequence (LotjaGi2g1v0327100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGACAAGTCACGTTCTCCAAGCGGCGCAGGGG GCTCTTCAAGAAAGCTGAAGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCCCTTGTAGTCTTCTCTTCCACTGGGAAGC TCTTCGAGTACTCCAACTTAAGTATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTTGCAAAACTGGAA CAACCGTCTCTCGAGTTGCAGTTAGTTGAAAACAGCAACTGCTCCAGATTGAATAAGGAAGTTGCTGAGAAGAGTCGTCT ATTAAGGCAGCTAAGAGGAGAGGATCTTCAAGGTTTAAATATTGAAGAATTACAACAACTGGAGAGGTCCCTGGAAACTG GATTGGGGCGTGTAATCGAAAAGAAGGGAGAGAAGATTATGAATGAGATCAATGGTCTCCAAATAAAGGGAAAGCAATTG ATGGAGGAGAACGAACGGCTAAAGCGTCACGTGGCTGGCATGATTAGCACAGGCTTAATGCATGGAGATACTGAGTCAGA ATTGTTAGTTATGGAAGAAGGTCATTCTTCAGAGTCTGTTACTAACGTTTGTAACTCCACTACTGGGCCTCCCTTAGAGG ATGATAGCTCAGACACGTCGCTCAAACTGGGGCTTCCATACTAA
Protein sequence (LotjaGi2g1v0327100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALVVFSSTGKLFEYSNLSMKEILERHHLHSKNLAKLE QPSLELQLVENSNCSRLNKEVAEKSRLLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMNEINGLQIKGKQL MEENERLKRHVAGMISTGLMHGDTESELLVMEEGHSSESVTNVCNSTTGPPLEDDSSDTSLKLGLPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 29.843 | ||
| SMART | 1 | 60 | 60 | 5.2E-38 | ||
| PANTHER | 2 | 181 | 180 | 1.6E-69 | – | |
| CDD | 2 | 77 | 76 | 3.29243E-40 | ||
| PANTHER | 2 | 181 | 180 | 1.6E-69 | – | |
| SUPERFAMILY | 3 | 82 | 80 | 1.1E-30 | ||
| PRINTS | 3 | 23 | 21 | 1.9E-27 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 8.1E-26 | ||
| Gene3D | 13 | 76 | 64 | 3.6E-28 | ||
| PRINTS | 23 | 38 | 16 | 1.9E-27 | ||
| PRINTS | 38 | 59 | 22 | 1.9E-27 | ||
| ProSiteProfiles | 87 | 177 | 91 | 12.976 | ||
| Pfam | 92 | 171 | 80 | 2.3E-15 | ||
| Coils | 94 | 114 | 21 | - | – | |
| Coils | 150 | 170 | 21 | - | – | |
| MobiDBLite | 193 | 227 | 35 | - | – | |
| MobiDBLite | 195 | 215 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0327100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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