Transcript — View — Lotus Base

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LotjaGi2g1v0332400.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0332400
Transcript ID	LotjaGi2g1v0332400.1
Related isoforms 1	LotjaGi2g1v0332400.2
Lotus japonicus genome version	Gifu v1.2
Description	Abscisic acid receptor; TAIR: AT4G17870.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp\|Q8VZS8\|PYL1_ARATH Abscisic acid receptor PYL1; TrEMBL-Plants: tr\|G7KF38\|G7KF38_MEDTR Abscisic acid receptor PYR1-like protein; Found in the gene: LotjaGi2g1v0332400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:80834537..80838164) extracted from Lotus japonicus Gifu genome v1.2.

TAGCCATGAGTGACCCATCACAAACCACAGTAGCATTCTTTTCTAAATTTCTATATATAGCTTATCCAGCGTGGGAGGGA ACAGGGTCTCACTCCTTGAATTTCCAATACTACCCCTCTCTGTCCCTCAAAATCTCCACTCGCAAGAGCGTCCCCCACAC ACTCTCTCTCTCCTTCCCTCACTCTCGCTTTCTCTCTCCTCCACATGGAGACCACCTCTGCCGCCGCCTCCACCTCCGAT CACCAGCAAGGTTCCGACGACAAGCACCTCACGCAGCACCACCTGACTCCCCCCTCAGGCCTCACCCCCGACGAGTTCGC CTCCCTCATCCCCGCCGTCACGGAGCACCACACCTACCTCACAGGCAACGGCCAATGCTCCTCCTTACTCGCCCAACGTA TCCACGCGCCACCAGACGCCGTCTGGTCCGTCGTCCGCCGCTTCGACAAGCCACAGTCCTACAAACACTTCATCAAAAGC TGCGCCGTCAAAGACGGCTTCCAGATGACCGTTGGCTGCACCAGAGACGTCAATGTCATCTCCGGCCTCCCAGCCGCCAC CTCCACCGAAAGACTCGACCTCCTCGACCAAGACCGCCGCGTCACCGGGTTCAGCATCATCGGCGGCGAGCACCGCCTCA AAAACTACCGCTCTGTCACCTCCGTTCATGGATTCGACGACGGTGCCGGTAAGATCTGGACCGTCGTTCTCGAATCCTAC CTCGTCGACGTTCCCGAGGGGAACACAGAGGAAGACACTCGCCTCTTCGCCGATACGGTGGTGAGGCTCAACCTTCAGAA GCTCGCTTCCGTCTCCGAAGGGAAGAACCGTGACGATGACGGTAAGTAAGTCACAGTTCTTTAACGTGAAAATTGAAATT AGTCCCCCAAAATTCAAAAATACAAGAAAAGGGATTGAAATTTGATGAATCCAAGTTTCGGTCCCTCATCAATACATAGA AGGAGAAAAACAAAGGAAATCACCAGTTTTTCTCTCTTTCTTTTATCTTTTTTTTTATTGAGTGAGACTTCAGTTCTAAT TTTGTTATTGATGATTTTTCTTCCATTCTTCTTCTTCTTCTTCTCCCTAATGCTTTGAAATTTGTTATTGCAATGGGTGA GGGCATTTCGGTCAATGTGCTTGTATAGGAAATGTTGACTATGGATGGATGTTCATGGTGAAATGTGAATATCATTTGCT TTCTGCTTTTCATCTTCTTGATTATATTCTGTTTAAATATATCTTTATTTTTTTAATTCCCTTTTTACTGCTATAATTAA GTGCAATCTTGATTAAAGAAGATGCTTCCTTATCTAGGTTATAGGGGTGCTTGAAAATCAAGTGATTTTGCTCTATAATG TAAAAAATTGTTCTATTGAATAGGACCAAAGCAACATTAACTTTTCCTCCATGAACATGGCAAATTGTTATAAAATTTTA CTATGGATAAATCATGGCAAATTAAAGAAAAAAATATGAAATTTCTCCATTTTTAGATAGGTATGACAGAAATTACCTTA TTTCAATAGATGAAGTTTTGTTGGAATTTTTTTACTTTCGGTTCGAATCTTTTATGAAACCATTTGAAATTCCATTTCGT TGGGTCCCAGTTGGTCTCTTCAGATGCAGTATCAATCATGTGTTGATGATGTACTATTATCATTTTTTTTAAGGATAATT TAAGATTTCATTCATCAGTGCTAGGATCACTTTCCATAGGCATAATAGGTAGAAGTAATACAACTGGGAGTGTCCTCTAT CCACTCTTGATTGATAAAGAGAATTTAGCTAGAAAATGAGTAGCTGAGTTAAGGTTTCTACTAACATGATTTAAACAAAA GAAGAGGAAACATGGTAAAGAATGTGTTCATCAAAATAACTATCAAAGAATGGTAAGGTTCCTAGCACTGTTGAAACATG GTAAGGTTCCTATTAGCATTTCTGGTGCTAAGGAATGTGTTCATCAAAATAACTATCAAAGAATGGTAAAACATAAGTAA AGACGAATCGATGCTACACATAACACTTCAATCTAACGTCATACATTTGGCGTAACTATGAAGGTTGAATATGAGTAACT GTCTAGACTATGAAGGTTGAATATGAGTAACTGTCTAGACTATGAAGGTTGAATATGAGTAACTGTCTAGACTATGAAGG TTGAATATGAGTAACTGATTCTAGACGTGGGCAAACGCTTCTCCACTTGTGAATACTTTGAACCTATGCTAACGGACATG ATTGACGTGAATTCAAATTAACTTGGAAGCTTTGGATTTGATTTGATCTCGAAGACTTGTGCTCGAATTGGTCTTGGAGG CTCTTATTCATTTTGATCACAAAGACTTATAATTACTGGTAGGATGGTCTAATTGGAACTTGATGGAAATAAACTTTTGA AGTCCAGGGTTCAAATCCTATTGGTAACAAATCTTACAAAACAAAGACTTATAATTAAATTGATCCTCGTGTAAATAACA TTAAAATCTCCTGAAGTAAGTCTTGAGCAGTTTACTTTTAAATTAACTTTGATAGCTGGTATCTGAATCGATCTCAAAAC TTCAATTTGAGTTGATCTTAGACACATTCTGAGTTAGTATAAAAAAGCTTTCATTTCAAGTTGGCCTAAGAGGCACATCC ACATATTGGACCTTAAAACTCTTATATTTGATTTAAACAGAAGAAGAGGAAACATGGTAAGCTATCTTTTATATTTGAAC ATCTACATTAAGCGTTTCTCAACACATGGTCTTTTAATTTTTTTTAAAGGTTTTTGCTTTTTTCAAACTTAATGTTAAAC CTTCTCATTTCTAGCTACAAGAGATAATATTATTCTAGCTCAAGAGGTGATGCACACCATCCATACTCAGAAGAAGGGAC GTGGTCTTGTAGCCATAAAGATTGATTTGGAAAAAGCTTATGATAGAGTCAGTTGGGACTTTCTACGAGCCACACTCTAT GATTTTGGATTTCCACCCCGAATCGTGGATCTAATCATGTGGGGAGTGAAATGTCCTAAACTATCTATCCTATGGAATTG CTCCAAGCTTCCCTCTTTCGCTCCTCAAAGAGGGCTTAGGCAAGGAGACCCACTTTCCCCATATTTGTTTGTGCTTTGTA TGGAGAGATTAGCGATTCAGATTCAGAATTTGGTAACACAGGGTACTTGGAAACCGGTGCGGATAACCAAGGATGGGGTG GGCATATCTCACCTATTCTTTGTGGATGATGTATTGTTGTTTTGCCAAGCCTCCAAGGAGCAACTACAACTGGTTAATAA CACCTTGAAGGAGTTTTGTGAAGCATCAGGAATGAAGGTAAATCTTGATAAGTCAAGAATGCTTTTTTCGAAAGCCGTGG ACCATCGGAGGCAAATAAATCTCTCTCATATTGCTGGTATCTCTAGAGCTAGTGATCTGGGAAAGTATCTTGGAATCCCT CTTCTCAAGGGTCGAGTAACCAAAGCGCACTTTGCTTCTCTAATTGGTAAGATGAGTTCACGACTGACATCTTGGAAGAA TAACCTTCTTAATCGAGCAGGACGGGTATGTCTGGCAAAATCAGTCCTCATGTAACACCTCGATTTCGGTGACGTCACTT TAGTAACCAAAAAGAAATTTAAAGCGTT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0332400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGACCACCTCTGCCGCCGCCTCCACCTCCGATCACCAGCAAGGTTCCGACGACAAGCACCTCACGCAGCACCACCT GACTCCCCCCTCAGGCCTCACCCCCGACGAGTTCGCCTCCCTCATCCCCGCCGTCACGGAGCACCACACCTACCTCACAG GCAACGGCCAATGCTCCTCCTTACTCGCCCAACGTATCCACGCGCCACCAGACGCCGTCTGGTCCGTCGTCCGCCGCTTC GACAAGCCACAGTCCTACAAACACTTCATCAAAAGCTGCGCCGTCAAAGACGGCTTCCAGATGACCGTTGGCTGCACCAG AGACGTCAATGTCATCTCCGGCCTCCCAGCCGCCACCTCCACCGAAAGACTCGACCTCCTCGACCAAGACCGCCGCGTCA CCGGGTTCAGCATCATCGGCGGCGAGCACCGCCTCAAAAACTACCGCTCTGTCACCTCCGTTCATGGATTCGACGACGGT GCCGGTAAGATCTGGACCGTCGTTCTCGAATCCTACCTCGTCGACGTTCCCGAGGGGAACACAGAGGAAGACACTCGCCT CTTCGCCGATACGGTGGTGAGGCTCAACCTTCAGAAGCTCGCTTCCGTCTCCGAAGGGAAGAACCGTGACGATGACGGTA AGTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0332400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METTSAAASTSDHQQGSDDKHLTQHHLTPPSGLTPDEFASLIPAVTEHHTYLTGNGQCSSLLAQRIHAPPDAVWSVVRRF DKPQSYKHFIKSCAVKDGFQMTVGCTRDVNVISGLPAATSTERLDLLDQDRRVTGFSIIGGEHRLKNYRSVTSVHGFDDG AGKIWTVVLESYLVDVPEGNTEEDTRLFADTVVRLNLQKLASVSEGKNRDDDGK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	35	35	-	–
PANTHER	PTHR31213 View details on PTHR31213 Search for proteins/transripts with this domain View external data on PTHR31213	22	211	190	2.0E-105	–
PANTHER	PTHR31213:SF63 View details on PTHR31213:SF63 Search for proteins/transripts with this domain View external data on PTHR31213:SF63	22	211	190	2.0E-105	–
Gene3D	G3DSA:3.30.530.20 View details on G3DSA:3.30.530.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.530.20	31	208	178	7.7E-81	IPR023393 Show description in modal box View details on IPR023393 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd07821 View details on cd07821 Search for proteins/transripts with this domain View external data on cd07821	58	205	148	1.33195E-30	–
SUPERFAMILY	SSF55961 View details on SSF55961 Search for proteins/transripts with this domain View external data on SSF55961	58	203	146	5.0E-29	–
Pfam	PF10604 View details on PF10604 Search for proteins/transripts with this domain View external data on PF10604	63	205	143	3.3E-13	IPR019587 Show description in modal box View details on IPR019587 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0332400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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