Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0333500 |
Transcript ID | LotjaGi2g1v0333500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | PLATZ transcription factor family protein; TAIR: AT4G17900.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|A0A0L9T5N1|A0A0L9T5N1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0333500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80947476..80950883) extracted from Lotus japonicus Gifu genome v1.2.
ATCACTTCACTTCATAAGGTTGTGTGTTTAACTTTCACAGCTATGTGAGGATTGTGTTGTTAGGGGAAATGTAAGCGACT TATGAGCTTAACGACTTGTTCTGACATGTAGTGATGACCTGAGCCGAACTGATCCAAATTTTTATTAAGCAAGATATGAG GATTAAAAAGGAAAGAAGGAGGTGGGTTCCTTAAGCCCAACGCATCTTGTATTAGGTTCGAGGTTTGGAGCTAGGTTTGG ATGAAGACTTTGTGAGGATAAGAACGACCCCTAACCCTCTCACTCTTGTTTCTCTCTCTAAGACGCCATCTACCGCTTAC ACAAGTTCTACAAGAACCCATTCCCTCCCTCATAGCCCCCACTCTGCTCTCTACTTTCACTTCACAACTTCTCTCTCCTC TTCTCTCTCAAGAAAACTCCCTCACTCTCTCTTACATTCATCTCAAACACACAAACTCTGTTCCAAACCACTCTGTTTTT CAATATGGCAATAGAAAACCAAGACAACACCACTGTCCGGGAAATCAAGCCCAAGAACAGGAGAATCATGGTATAAATTC ACATACTCATTGTTTTTTTTATGATTCTACCTAATGTATATGTTCTAGTTTTTCTTGGGGTCTAAAGGCATTGTGAAATT GAGATTCCATTGTATTTTGCTCTGTTTTTCTCTGTTTTCCCCTGTTTTTCCTCTGTTTTGACCTCTAATTCTTGTTTTTC TGTGTCTGATTTAACAATTTTTTGGATTGATTTTGAATAGGGTGCTGGAGGACCTGAAGAAGATGACAACAGGTGGCCAC CATGGTTGAAGCCTCTGCTGAAAGAGAACTTCTTTGTTCAATGCAAGTTTCACGCTGATTCCCACAAGAGTGAATGCAAC ATGTATTGCTTGGACTGTATGAACGGTGCTCTCTGCTCTCTCTGCCTCGGTCACCACAAGGATCACCGTGCAATCCAGGT TTGTTACCTCATTCAAACAACTTTGCAATCTGACACATTTTTCGGTCTTGGTCTAGCACAGTGTCATTGTCATCAAATTC ATCACTTTTCCTTAAATAGAGGCATAGAGCTACTACTTCATTTCATTCTTTTTATGGATTTTGGTTAAAAACACCACCTT CCCTTCCCTGCAGAGATCTCTGAACTGCAATTAATTAGTCCATTTGTCTAAACCATGTCCTGCATTTACCAACTTCTATA GAATGGTGTGAAAGTAGCCAAAAATGTCAGGTTTTCAATGCAAGTTTAACAAGTTTTTTTTTGTGTTGTGAACAGATTAG GAGGTCCTCCTACCATGATGTGATCAGGGTCTCTGAGATTCAGAAGGTGCTGGACATCACTGGCGTCCAGACCTACATTA TCAACAGCGCAAGGGTGGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTGGGAAAGGTGTCACCAACACTTGTGAAGTC TGTGAGCGCAGCCTTCTTGATTCTTTCCGCTTCTGTTCTCTGGGTTGCAAGGTATCTTTCTTTACCATCATTGTCTTTTT TCCCATTGTATACACTTCTAAGGATTTTAAAGAAAAAAAAATCTTGGAAAAAATGGGTTTTTTTGCCTACTTTTCAAGCG AATTGAGCAAACTTTTTAGTTCAAATGAGTTGACTTTTACTGGTAGCAAGCCATGAAAAATGGGTATGCTCTTTGATTCA CGGGACTCTTGGATTCTTGAATAGATTTTCTTTTACCTTAATTTCTTGAGAGCATTTAAGAATCATCAATGTTTGAAATC TTGGGATTTGAATGTTGACTTTGAATGCCCAATTTGTCTTTGTTACTTTTAATTTGTGTTCAAGTTTGAATGTGTTCTGG TTCAATGTTGATTAATCAATGTGAATGAATATGAATTGCAGATTGTTGGAACTTCCAAGAATTTTGAAAAGAAGAAGAAG CTCTCAGTGGCAATGGCATCAGATTCTGAGGATTCATACAGCAGCAACAGTAACCATGGCAGGAAGAACATTCACAACAA CCACAACAACAACAACAACAAAGTCCAGAGCTTCTCACCATCCACACCGCCTCCAACTTCAGTTAATTACAGAACAGCCA AGAGGAGGAAGGGAATACCTCACAGAGCCCCAATGGTGGGGCTAGTCATAGAATATTAGATATAATGTGGGTATTTTTAG GTTATATATTTGCTACATGATTCTATAAGTACTAATGCTGAAAGTACTGCAAGTTCTTTATGCTTTTTCTGTAGTGGTTT TCATGTATATAGAAAATCAACCCAATAGAAGTGTAGCAACTAGCAAAAATAAAGTCACCTGTGAAATAGTTGATGGTGGT GCAGTTAGCAACCCGTGCGTGTTGTGTAGCAAAACAAGTAAAGTCTCTTTTCAAATTTCAACCTAGTTTAAGATGATGAT AATGATGATATGGTTAAGAAACTGTTATAGGGTTTGGGTTTCTAGAGTAATTATACCTAAGTTTTGGGGCTGTTAGTGTA AATAGTGGTGGGGGGAAGAAGACAAATGACAATGTACTACTCCTTATTATGTCGACATATGGAATAGAAAATAAAAGAGA TTTTATCACAATGTGTTGTACTTCAATTATTTTTCCTCTCCTCTTTGATTAACTTCTGAGCTAGATTCATTCACATTCAT AATAATATCCACTCCTCTTCATTTTCAATTTAAATGAGGTGTGTATAGAATTTTCCCTTAATTTCCCAATGTGATTGTAA CCTGTGTGCTGAGTGGCCATGAATATTGGTGGTGGTGAAGGTATAGACAGTGGGGTCCACTGTAGCCGGCTTATATGGGA GTGCTCGTCAGCATGCGCACGTGCCAACCTCTCATTGGTGTTTATGAAAGCTATGTATTGGTTCTTGAAAAGAGAGTAGG TCACTCAGCCGCCCTCAATCAGAAAAAAATGTATATTATATAGATTATAATATTATATTCTATAGGCGGTTCCGTAGTAC CTTGGTATTTCATACCGTGGGGTCCTCTGTCATTTTGATCCAACGGCTGCGATTGAGGAAAATTGGACGGATGAGATCTT CTAATCTGCCCCCAATCATGGAGTAGATTCCTGAATGGGGAAATCGGAGGGCTGAGAATCGTTGAAGTAACTTTTTGTTA GTGGACGTATAAAATAAAACGCATTAGCCAAACTGCCAAAGCAAATGACATAGATTTGTCGTAAATTTCAAGAGGTTAGT GAAACTTGTTGGGAACTTTCTTAGATTGCCAATTTGTTGATGGGTCTAATCATGAGGATGGATAAAGTGATGATCAATGG AGTGATGCTAAACGTGAATTTTCCTTCCAAGAGTAGGGGTGTGAGTTGACATAAGTTATGCGTTTTGTGTTGAAATTTCC TAATTAGATGGAATTTCCTTATCACCCCTTTCATAGGGAAAGGGTCTA
CDS sequence (LotjaGi2g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATAGAAAACCAAGACAACACCACTGTCCGGGAAATCAAGCCCAAGAACAGGAGAATCATGGGTGCTGGAGGACC TGAAGAAGATGACAACAGGTGGCCACCATGGTTGAAGCCTCTGCTGAAAGAGAACTTCTTTGTTCAATGCAAGTTTCACG CTGATTCCCACAAGAGTGAATGCAACATGTATTGCTTGGACTGTATGAACGGTGCTCTCTGCTCTCTCTGCCTCGGTCAC CACAAGGATCACCGTGCAATCCAGATTAGGAGGTCCTCCTACCATGATGTGATCAGGGTCTCTGAGATTCAGAAGGTGCT GGACATCACTGGCGTCCAGACCTACATTATCAACAGCGCAAGGGTGGTGTTCTTGAATGAGAGGCCTCAGCCAAGGCCTG GGAAAGGTGTCACCAACACTTGTGAAGTCTGTGAGCGCAGCCTTCTTGATTCTTTCCGCTTCTGTTCTCTGGGTTGCAAG ATTGTTGGAACTTCCAAGAATTTTGAAAAGAAGAAGAAGCTCTCAGTGGCAATGGCATCAGATTCTGAGGATTCATACAG CAGCAACAGTAACCATGGCAGGAAGAACATTCACAACAACCACAACAACAACAACAACAAAGTCCAGAGCTTCTCACCAT CCACACCGCCTCCAACTTCAGTTAATTACAGAACAGCCAAGAGGAGGAAGGGAATACCTCACAGAGCCCCAATGGTGGGG CTAGTCATAGAATATTAG
Protein sequence (LotjaGi2g1v0333500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIENQDNTTVREIKPKNRRIMGAGGPEEDDNRWPPWLKPLLKENFFVQCKFHADSHKSECNMYCLDCMNGALCSLCLGH HKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCK IVGTSKNFEKKKKLSVAMASDSEDSYSSNSNHGRKNIHNNHNNNNNKVQSFSPSTPPPTSVNYRTAKRRKGIPHRAPMVG LVIEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 30 | 30 | - | – | |
MobiDBLite | 10 | 30 | 21 | - | – | |
PANTHER | 22 | 240 | 219 | 2.1E-133 | – | |
PANTHER | 22 | 240 | 219 | 2.1E-133 | – | |
Pfam | 90 | 161 | 72 | 1.1E-28 | ||
MobiDBLite | 179 | 232 | 54 | - | – | |
MobiDBLite | 180 | 222 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0333500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…