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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0334400 |
| Transcript ID | LotjaGi2g1v0334400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein, putative; TAIR: AT5G46840.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q5AHI7|NOP12_CANAL Nucleolar protein 12; TrEMBL-Plants: tr|A0A0S3T310|A0A0S3T310_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0334400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81042152..81047126) extracted from Lotus japonicus Gifu genome v1.2.
GAGATTGAATTGAAGCTTCCTAGGCCCGCCCTAGCCGTCGATAACCCTCTCCTCCTTCCTTCTCAGCTTCAAACGGATTC TAGGGTTTCTGCAAAAAAACCAGTCTCTGGTTGAAACAACTGCCTCATCAATTTCCCATTCCTTCAATCAAGCTCAGCAA TGGCTAAAGGGAAACCCAAGAAATCTTCCAAGACCCCTCAAAACGACGCCGTATCACCCCCTGCCGGTATTTTCAGCACG CTATTTGGCAACGCGGCGGAAGAGAGCGCCGGCACCGCCGCTTCTCTGTTTTCCGATAACAACCCCTTTCGGAGAAAGCC TCAGCAACCTGCTCCTGTTTCTGATGAAATCAATCACACTCAGAGCCCCATCAACGACGGCGAAGAGAAGAAGAGGAAGA GGAAAAAGGAGAAAACCCCCGCCGTTGATTCCGATATTGTGATGGAAGCTTCGGAGAAGTCGGAGAAGAAGAGGAAACAT GGCTCTGATGAAAGGGTAAGGGTAAGGGAAAGGGAAGATCTTGATTTGGAGGTGAAAGCCATTGGGGAGGGAGAAGAGGG GGAGAGGAAGAACAAGAGGAAGAGAGAGGAGCTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATAGTGGAGGGTGGAG AGGGAGGTGAAGGGGAAGGGCATGGGAAGAAAACTGTTGGAAGCAAGAGGAAGGTGTTGGATAATCCAGCTGATATGTTG GTTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACCATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAA GAAGACTTTGATGACTGAGTTTAAGAAATTTGGTGAGGTGGAATCTGTCAGGATTCGCTCTGTTCCATTACAAGATGTAG GTGCCCCTTATGTTTAATGTTTTAGAGGATTCAATGTGTATTTATGTTTATATGTTTGTTTTTTTATGCTAACTTCATGT TTGTTCATGTTTTTGATGAACCAGACCAAAAAACCTAGAAAGGGAGCTATACTCGCGAAGAAAATTGATGAATCCGCTGA TAGGTAATGGGTCTGATTGAACAATTATCTAGCTGCAACTTGCCTGTTTGTAGGGAATGCTGTTACTTTGTAGTTGTCAT TTTAATATGTTCGTATGGATTCAATACTAAGGAAAAGTTTGCGCGTTTTAGGCTTTGAGAAATTAGTGTTCTGATTTGAT GCTTTGCAAGGGGAGCTATGGATACTCTATTCATGTATTTTATATCTTGCAAATCACTTTTTTTTTATCAAAAGTTTTAA GTGACTTGTAGACAGTCTGAGAAGAATACAAGCATTTTAATTTAAGGGAAACTTTTCTGACATATCTAATTGAGAAATGT TTTGCGTTGCAGCGTTAATGCATATATTGTTTTCAAAGATGAACAAGCTGCTCAGGCTTCTTTGTCCCACAACATGACTG TGGTACGCCCTTGTTCCTCTAAGTTGGGTTGGATCAAATCTCGCCATGTATTTTTGGTCAAGGATTGTGTATGACAGTTT GCTAACACTTCTGTTTAATTATCTGGCTGTAGGTTGAAGGAAACCACATTCGTGTTGATAGGGCATGCCCACCTCGCAAG AAACTTAAAAGTGAGAGTGCTACACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGT ATCTTTCCAATCAACAGTTTTATGTTTGAGGTCACAATAATTCTTCATTGCTGCTCCTATTTTTTCTAATGGATCTAACA TGTGATCCTTTTCTGCAGGATGAAGAACTTTATCAGTTATTTTGTGGTATACACAACCTATCTTCAAGTATAGAAGCTGT TAGAGTGGTTCGTGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTCCTCTTTAAAACAAGGGTATGCATTTTTG GTTTCTGTTTTGTTATGCATTTTTATAATTTTTAAATGAATGCTCTTTTACATTTTTTAGCTCAAACTCGAACATGTTAT AATCGATGCCATCATGTCGTTCCCTTATGGCGGTGAAACTATTGGGCTGTCTGTGGTTGATAAGCCTGTGGAGACCTCAC TGTCATTAAAAACGATCTCATTTGTCTGTTACTTTTGGAATTACATTTTATCTATTCCTGAAAAGCAGATTCTTTTTGCG ATATAATTTGGAATATAAGGATTGAAATGGGCAGTTGCTTGTGCTCTGGTTTTGTTAACTTTATTTTGGATTGGCTACTT ACTGTAGTCTGTAGTAGGTCTTTTGTGCAACTATATACATATATATCATCTGCAGAATTTACCTTCTTTCAATAAGATCA TAAGTAGTTAGAGACACGTATGTTACTATTGAACACTAAAGTGTTGATACAGTTGAGTTAAGCTGCATTTTGCAAGTTAA GTCCACTTGATTTGGAAACCTGATGCAGGTCCTCTGTAGACCAATATCTTTCAGCCCACAACCTTGCTCCCTCAAATTCG AGATAGAAAAAAAAACAGAACTCGAGCTTTAGATCGATGAATGAAGCTCTTTGTCTTATGAAGAAGCCTTTTCAATTTTT AATCTTTTGGTTGCTAGATGAATTTTTATTTTAGGAAAACCCTTTCTATCTAACAAAGTACCAACACATGGACAAAAAGT GGTTGGTTCAAGCGATACATCCCTGATTCCCCTTAAGCAAGGTCTCATGTTTGAATCTTGTATGTAGAAAAACTCCCGCT GCGAGAGCTAGGTGCTCTATTAGGATGTGGATGTTCTAGCTTAAACAGGATTGTCTCCGCTGAAAGATACTCGTTAGAGA TAAAAAGTGTCAATATATGGAAGGTTTTTCTTAAGTTTTGTGGACATTTTCCTGCTCACCAGTGCTGTACCATTTAAAAT TCCTACTCTAGTTGTTAAAAACTTGACTGTAATAGAAAAGAACAATTATATGAGAAAAACTTGACTGACACACACACAAC CACCCACCTCCCTATGCATATATACAGGAAATGAGGAAATGTATCATGTGAGAGTCAGTTGAGTAGATAAACTTGACCTT ACACTTATAATGGATGGTCAACATTAAAATAATCTTGACTCTCCATGTCTAGTTATAAAGTCAATATTAGCTTGTCTCAC CTGGACACGTACACATGGGTGCGGACCTACTTTGCTTGAATTTTTTTTGTAAAATATGGAAATGTGATATTTTATAGACC ATATGTGTCCTTTGTTGGAGGCAATCCTGCTTGAATCGGGAGGACTACTATGAGCAGCGAAACTCTCCAAATATTCAATG AAGCTACATACTAGGATACAACCTAAGACCTGTGGTTGAGTTAGATCAACTTGGTGGTTATATGAAATTGTGATATTAAT ATGTTATCCCCACACATCAAATCTTAGATAAATCAGATATTGATAGGTGTATTCTAATATTTACTTTAAGGAGGATATTT TAAAGATTCAAACAATTAATTACCAATGCATTTAATGTTCTGCTTTCATCAAATGCTTTAAGGCAAATGCTTTAAGGCTT TATCGATAGCAAGTTTTAAATGAAAAGTAAGGCTTTTTAAGTTAACCAGCAAGGCTTGCATTTTAAGTAGTATATTATAC GTTAAACTCAATTTGATTGGTGAAATGTCAGTTAGTTTTGAAGTTATATGAACTTTTGTACACTTGATCTATTTAATGAG AAATTTTAATCCAATGGATGTATTGAAATTCAATGTTCGTAAAAAGTTACTAAATGGAGTAAGTTAGAAAGGAGATGTTT TACACGGGCAGCATTCTGGGGTTAGGCCGTAGGATATGTTAATTGCTGCCTTGTGATCGCTTTGCTTTGTTTTAAGCAAT TACTTGTTTTTTGGTTTCCACAATTCCTCTTGGGGTAGGTCGTATGGATATTCCTATTAGTTGATGGCTCGATATTATTT GAGACCTGTTAGTTTGTGTTGTTATATCAAAAGTCATGGTATGCAAAAATTGGCATAAAGAACGTTAACACTTCTGTGTC CTGTAAATGCAGGAAGCTGCTAATTTTGCTGTTAAAAGACGGTACTTGAAGCTTCGAGACCGGGAGTTGAGACTTAGTCA TGCCAAAGCAGATGCTACCCCATCTAAAAGGCTGAATACCCCATCTAAAAGGCTGGAGACCCCATCTAAAAGGCCGAACT CATCACCAGCACAAGCTCCTAGTACGCCTGCGAAGAAGCCTGTGGCTTCAAGGTCTCCTTCAATCAGTATTACCAAGCCA GACAAGAAACCATCTTATCAGGGTCTGCGTGCAACCAAGCCAACAGCCCACAAGAAAACTCCTGGAGGAGAGAAACCAAA AGTGCGCAAGACGAAAAGACCATCAGTAGCTGCCAGAAGGGCTAAACCAAATTTTGCGAAGGAGGATGGTCCACCTAAAC AAGCAGGGACGAAACGCAAGCTTGATAGTCGTACTCCAGACAGCTCCCTACGAGCTAAGAAAAAGAACAAGTAGCTTGTT TCTAATGGTATCAGGGGTTAGATTATCTCTTATTGAAATTCATAGCTCAAAAAGAATTTATCTACACTGATGATTTTAAG GTAGTGGGAGATTTCACCAATCTTCTCAGTTCATAACCTCACTGTGGACTTAAAGGTGCAACCAAGAGTTCAGAAATCAG TAGACAGATGGATGCAAATGTACTCTTTACATTTTAATTTTCTTTTACATTATAGAATTATTGCCCTCGTCAGTTTATTT TAAATTTGATGTGTAACATTAGCTCATTTTATATAAATATGGGTGTGTTAATATTTAAATTCCATTCTATGGTAATGGGG CATTTACTTTTGCTCCTTAAATTATGCTTAATTTTTTTTACAGTGTATTTGCTTTATTTGCTGTGCCAGGCATTGAAGTT GGGCAAAATCTATTTGATCTGATGATCCACCTGTTGTTGACCATGTTGGATATATTAGTATTTTAATATTGGGTTCAGTT TTTAATCAATCAGAG
CDS sequence (LotjaGi2g1v0334400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAAGGGAAACCCAAGAAATCTTCCAAGACCCCTCAAAACGACGCCGTATCACCCCCTGCCGGTATTTTCAGCAC GCTATTTGGCAACGCGGCGGAAGAGAGCGCCGGCACCGCCGCTTCTCTGTTTTCCGATAACAACCCCTTTCGGAGAAAGC CTCAGCAACCTGCTCCTGTTTCTGATGAAATCAATCACACTCAGAGCCCCATCAACGACGGCGAAGAGAAGAAGAGGAAG AGGAAAAAGGAGAAAACCCCCGCCGTTGATTCCGATATTGTGATGGAAGCTTCGGAGAAGTCGGAGAAGAAGAGGAAACA TGGCTCTGATGAAAGGGTAAGGGTAAGGGAAAGGGAAGATCTTGATTTGGAGGTGAAAGCCATTGGGGAGGGAGAAGAGG GGGAGAGGAAGAACAAGAGGAAGAGAGAGGAGCTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATAGTGGAGGGTGGA GAGGGAGGTGAAGGGGAAGGGCATGGGAAGAAAACTGTTGGAAGCAAGAGGAAGGTGTTGGATAATCCAGCTGATATGTT GGTTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACCATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAA AGAAGACTTTGATGACTGAGTTTAAGAAATTTGGTGAGGTGGAATCTGTCAGGATTCGCTCTGTTCCATTACAAGATACC AAAAAACCTAGAAAGGGAGCTATACTCGCGAAGAAAATTGATGAATCCGCTGATAGCGTTAATGCATATATTGTTTTCAA AGATGAACAAGCTGCTCAGGCTTCTTTGTCCCACAACATGACTGTGGTTGAAGGAAACCACATTCGTGTTGATAGGGCAT GCCCACCTCGCAAGAAACTTAAAAGTGAGAGTGCTACACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCA TTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGTATACACAACCTATCTTCAAGTATAGAAGCTGTTAGAGT GGTTCGTGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTCCTCTTTAAAACAAGGGAAGCTGCTAATTTTGCTG TTAAAAGACGGTACTTGAAGCTTCGAGACCGGGAGTTGAGACTTAGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGG CTGAATACCCCATCTAAAAGGCTGGAGACCCCATCTAAAAGGCCGAACTCATCACCAGCACAAGCTCCTAGTACGCCTGC GAAGAAGCCTGTGGCTTCAAGGTCTCCTTCAATCAGTATTACCAAGCCAGACAAGAAACCATCTTATCAGGGTCTGCGTG CAACCAAGCCAACAGCCCACAAGAAAACTCCTGGAGGAGAGAAACCAAAAGTGCGCAAGACGAAAAGACCATCAGTAGCT GCCAGAAGGGCTAAACCAAATTTTGCGAAGGAGGATGGTCCACCTAAACAAGCAGGGACGAAACGCAAGCTTGATAGTCG TACTCCAGACAGCTCCCTACGAGCTAAGAAAAAGAACAAGTAG
Protein sequence (LotjaGi2g1v0334400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGKPKKSSKTPQNDAVSPPAGIFSTLFGNAAEESAGTAASLFSDNNPFRRKPQQPAPVSDEINHTQSPINDGEEKKRK RKKEKTPAVDSDIVMEASEKSEKKRKHGSDERVRVREREDLDLEVKAIGEGEEGERKNKRKREELEKEWEEKKYGIVEGG EGGEGEGHGKKTVGSKRKVLDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLMTEFKKFGEVESVRIRSVPLQDT KKPRKGAILAKKIDESADSVNAYIVFKDEQAAQASLSHNMTVVEGNHIRVDRACPPRKKLKSESATLYDNKRTVFVGNLP FDVKDEELYQLFCGIHNLSSSIEAVRVVRDPHLNVGKGIAYVLFKTREAANFAVKRRYLKLRDRELRLSHAKADATPSKR LNTPSKRLETPSKRPNSSPAQAPSTPAKKPVASRSPSISITKPDKKPSYQGLRATKPTAHKKTPGGEKPKVRKTKRPSVA ARRAKPNFAKEDGPPKQAGTKRKLDSRTPDSSLRAKKKNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 115 | 115 | - | – | |
| MobiDBLite | 38 | 68 | 31 | - | – | |
| PANTHER | 63 | 519 | 457 | 2.7E-87 | – | |
| PANTHER | 63 | 519 | 457 | 2.7E-87 | – | |
| MobiDBLite | 69 | 115 | 47 | - | – | |
| MobiDBLite | 126 | 145 | 20 | - | – | |
| SUPERFAMILY | 194 | 301 | 108 | 8.19E-14 | ||
| Gene3D | 197 | 299 | 103 | 1.0E-16 | ||
| ProSiteProfiles | 201 | 295 | 95 | 12.543 | ||
| CDD | 201 | 291 | 91 | 7.39372E-38 | ||
| SMART | 202 | 291 | 90 | 1.9E-8 | ||
| Pfam | 203 | 245 | 43 | 9.5E-6 | ||
| Gene3D | 300 | 391 | 92 | 3.5E-18 | ||
| SUPERFAMILY | 308 | 403 | 96 | 2.28E-18 | ||
| ProSiteProfiles | 312 | 393 | 82 | 15.374 | ||
| SMART | 313 | 389 | 77 | 5.8E-15 | ||
| CDD | 313 | 389 | 77 | 1.12333E-30 | ||
| Pfam | 314 | 386 | 73 | 3.4E-9 | ||
| MobiDBLite | 390 | 520 | 131 | - | – | |
| MobiDBLite | 396 | 444 | 49 | - | – | |
| MobiDBLite | 460 | 474 | 15 | - | – | |
| MobiDBLite | 485 | 520 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0334400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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