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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0338300 |
| Transcript ID | LotjaGi2g1v0338300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MIP18 family protein; TAIR: AT1G68310.2 MIP18 family protein (DUF59); Swiss-Prot: sp|Q9C9G6|AE7_ARATH Protein AE7; TrEMBL-Plants: tr|V7CJE0|V7CJE0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0338300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81535106..81538883) extracted from Lotus japonicus Gifu genome v1.2.
TCGGTGACGGAGAGAGAGAGAGAGATTCCGGCGAGAAACGCGGCGGAGGAAAATGGATTGGAGGCTGCGTGACGTGAATG AAGTTGCAACAAACTTGGAGAGAGAGAGAGAGAGAGTTGGAGAAGAATGAATGAGATATTTAGGATACCTGAAAGTACAG CTTTGCCCATGAAATAACATTGTTTTCCACTTCTACCCCTCTGTTTTAACCCATATTCCATCTTCTACTTTCTTCTCAAT CCCTAGCCCCTTTCTCTCAGAAACTCCCTCGTCGTCGACGCCGTCGCAGCACCGCGACTCCGACGCCAATCTCCGCCGTC GTTCAATCCTCTCCCTCCGTCGCCAAGGAGTACAGAGAAATGGTGTCCGAGTTAATCAACGCGAACCCTATCATATACGA GAAGAAACAGCGTCGTGCTCGCACTGCTCCGTCTGCTTGCGATGACGACTGTGCTCTCGAATCAATCGATGAACTGGAGG TTTTTGATATCCTTTTTCAATTCCAAATTTCTTGTTCAATGTTAATCATTACTCTGAAAATCAAAGTGAAATCGATCATG GTGAGTTTGATTTTTCCTTAACATTTTCTCACATCATATAAGAGATATCAAGGATCCTGAGCATCCATACTCCTTGGAAG AGCTCAAGGTGATCACAGAGGAAGCAATTGAGCTCGATGATCAACGTAGTTATGTTAGGTAGGTACTCATGTATTATCTA ATTTCTAGAATACTTCATGTGAATTGTGAATTGTGAAATGTTTAATTTGCTTGTTTTATTGGATGATGATTTTATTTTAT TGGATGATGCTTAATTTGTTTGTTTTATTGGATGATGATGATGATGATGATGATGATTGTGGTTTCTTTTAGGGTTACAT TTACTCCAACGGTGGAACATTGCAGTATGGCGACGATTATAGGTCTTTGCATACGGGTCAAGCTCATGAGAAGCTTGCCT TCCCGGTACAAGGTATTCACCATTTTTTCCCCATAGATGTAACTAGTTAATGGATATTTTGTTACATGATAATTAAATGA TGGGTAGTAAGTGCGGGTGAAACTTGTTTCACTTGTGAGTGATGGAGATATGCTTATCATTATAGAAGTTATGATTTGCT CGTTTGAAATGGTGATTTATGACATGACATGAACTTCGGAATTTCTTGTTATTTCTCAAATGGTTTTCTTTGTTCTTGTA AATAATTGATATTAAATACATGAGGCTCATTATGGAAGTCGCGGCACAACGTTTTCCATTTTAGTATGAATTTGTTGTCT TTGATCTTTATAATTTCCTGAGAGGGAAATAGTAAGTGCAGGAGGACAAGAAATCCTCCCAACACAAACAATATCTGCAA AAAAAATACACACACACACTAAAAAATGAGAATATCACCTTAAAACCAGGGTTTTCAATAGTGCTATAATGTCGTAATGG TGTGAATATCCCATGGTCCCTCCAGGCTGTCTTGTAGGGTTGTAGTTCATAGTAGCGGCTGCTATAATGGAAGAAATAGC GGCCATCGTGGTGCAATTTGACCCTTATTGGAAGTGATGGACAAAAATCCCAAAAATGCTCACGAAAGTTAAGATCAGGA CATTATTTGGGAGATACTTCAAGGTTTCTGTTTGAAAACATAATGAAGATGTCTTGTTGTATTAAAAACCCTCAGTCTGC GCCTTTCATCCCTTCTTTGTCTATAAGACTTTGAGCTGACCCATTGTGGAGTGACTGTTGACCAGACACCACACAGCGCC ATGGCGAGCCTCCCTGGCCAAAAGCATCTTTGTTTTCTCAGTTCTCAAAATGTAGTAAGTTTAGAATGCTCTCTCCCCCC CCCCCCCATCATATATATGTGTATACAGTATAAAAAATTCAACACAACAGGATGGCAGCTATGCGCTTTGCCGCTATAGC ATTTCTGGAGTTGGCTGCTACGAGCTGCTATTTGGGATTGGCAACACTCCGTAAAACAGAGTCCAAGCCTTTGCATATAT TAGATAAAGATAGAGTCCTTAAAAAAAACCATTTGCTGAAACAGAAACCCCCGAGGCATCTAACTAAACAAGCAATTCCA AAAAATATAATGAACAGAGCTAAAATTCTAAAACCTAGGCTTGAACTATGAAGTTATTTGCCTAATATCTACGGTATAGA CTTTGGTTAGTCTATCACTAAGCCATTCTTTTGTTGATACTAATGCTCTCTTAAAAGGAATTTACCCTACTACACAAGAT TTACATCGGGACATATCCTTCCTCTTGTATATCTTTGTTACTCGCATGATATTCTGCATCTGCAACCATTATATAGCAGC TCAACAATAATCTACTCTTTTGTTTTCCCCCTTTTCTTTAACGTTTATGTGTTGCTTTTCAATTTTTAAAACAGAGAATA CAAGCCATTATGATTACTTTACTATCCAGTTGAACTCCTGTGCTTTTTAATTTTTATGTTCTGCTTATGTTTATCTTTGA TCATATTTGTTAATTCTGGTTAGGTGGACATCAGGCTAGCTCCTGGATCTCATGCAACTGAAGCTGCAGGTTTTTCCTCT TCTTTCTCTCTTTCTCCCTCTGTATGTGATACCGCGTCTGTTTTTTGTAAAGGATTCCATTTGTGTGCTGATCATTCTAC AGCACTTAAAATATTAAACTAGAGGAGAAGTCTTACTACTTACGTGATAATCACATCTTGCTCTTGAAGAAATGCATTCT GTTGTTAGACCTTTTATCTTATTTATATTTAGATTTATTTGGGGTGGAAATCATAGATTTATGTTTAGATTTAGCACTTC AATTTATTGGATGATTATCTGTTTTACACAAGTCTGTCTGAAGTTGAGGAAAATTTATGAAGTGAAAAGTAAAAAAGAGG CAGTGAAATGCCTCCAGTTTCTCCGACATTGGTTGATGTTTTGAATTCCCCACTTGTGAATCATTAATCATGACTGGACC TTCATTCTTATTATATCAATTTTTTTGTTCCAAATTTGTTTGCAGTTAACAAACAACTAAATGATAAAGAGCGTGTGGCT GCTGCACTGGAAAACCCAGGCCTTGTGAGCATGGTTGATGAATGCCTTGCTCCATCTTATGATTGAAGGAGCTCTTTTCC TTCCAGTGCAACAAGACTGTAGGTGTTTTTTTTGTGCCTTTCCTAGAAGTTGGTCAGCTTTATTTGTCATGTTTTTTGTT ACTTGAACATTGGTCTTGAATAATTGTAGTTAAATAGGAATACACAGTTCAAAAATGTAATAGCTTAATGAGGTATCTAG GTTCTTTGATTATTAGCTCTAGCAAAGAAAAGGGGAATTTCTTTTTATGTTTTGAAGTTGTCAGCTTATGTTTTATAGGT TACACTGTTTATATACTATCTCATGACTGCTATTACTATTAGGACTGGACTGGGAAAGGTTGAAACAAAAGGTGAGGACC ATGGAATATTTTGGAGGATGGAAGTTGGAACCAAATAGACGAGAACATGGTTTTATGTTGCGTTGAAGTATAGATATTTG AAGTTTTAAAATTATTTGATAGGTTTGTTCTGACTCTTCTCTGGACCCCAGTGGCAGTTTGGCAGAGCTCTACAAGCACC CTGTTGCACTTTTATTTTTGTTCAATAGTAATATGTTAATTTCAATCCCAATTCTGACATATATATATAAGCCAACAAAG AATGAACCAATATTAATGAATCAATTTTATATTAATGAGCACAAAAAAATGTAACTGGTTCATGGAAGAAACATTTAATC TCTCCATATTGATGGAAT
CDS sequence (LotjaGi2g1v0338300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCGAGTTAATCAACGCGAACCCTATCATATACGAGAAGAAACAGCGTCGTGCTCGCACTGCTCCGTCTGCTTG CGATGACGACTGTGCTCTCGAATCAATCGATGAACTGGAGGTTTTTGATCATATAAGAGATATCAAGGATCCTGAGCATC CATACTCCTTGGAAGAGCTCAAGGTGATCACAGAGGAAGCAATTGAGCTCGATGATCAACGTAGTTATGTTAGGGTTACA TTTACTCCAACGGTGGAACATTGCAGTATGGCGACGATTATAGGTCTTTGCATACGGGTCAAGCTCATGAGAAGCTTGCC TTCCCGGTACAAGGTGGACATCAGGCTAGCTCCTGGATCTCATGCAACTGAAGCTGCAGTTAACAAACAACTAAATGATA AAGAGCGTGTGGCTGCTGCACTGGAAAACCCAGGCCTTGTGAGCATGGTTGATGAATGCCTTGCTCCATCTTATGATTGA
Protein sequence (LotjaGi2g1v0338300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSELINANPIIYEKKQRRARTAPSACDDDCALESIDELEVFDHIRDIKDPEHPYSLEELKVITEEAIELDDQRSYVRVT FTPTVEHCSMATIIGLCIRVKLMRSLPSRYKVDIRLAPGSHATEAAVNKQLNDKERVAAALENPGLVSMVDECLAPSYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 7.9E-91 | – | |
| PANTHER | 1 | 159 | 159 | 7.9E-91 | ||
| Gene3D | 30 | 155 | 126 | 3.1E-54 | ||
| SUPERFAMILY | 35 | 136 | 102 | 2.88E-16 | ||
| Pfam | 40 | 113 | 74 | 3.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein maturation by [4Fe-4S] cluster transfer | The transfer of an assembled 4Fe-4S] cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. |
Expression pattern of LotjaGi2g1v0338300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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