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LotjaGi2g1v0338300.2

Overview

Field Value
Gene ID LotjaGi2g1v0338300
Transcript ID LotjaGi2g1v0338300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description MIP18 family protein; TAIR: AT1G68310.1 MIP18 family protein (DUF59); Swiss-Prot: sp|Q9C9G6|AE7_ARATH Protein AE7; TrEMBL-Plants: tr|A0A151RQN1|A0A151RQN1_CAJCA UPF0195 protein family; Found in the gene: LotjaGi2g1v0338300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81535782..81538211) extracted from Lotus japonicus Gifu genome v1.2.

ATGATCAACGTAGTTATGTTAGGTAGGTACTCATGTATTATCTAATTTCTAGAATACTTCATGTGAATTGTGAATTGTGA AATGTTTAATTTGCTTGTTTTATTGGATGATGATTTTATTTTATTGGATGATGCTTAATTTGTTTGTTTTATTGGATGAT GATGATGATGATGATGATGATTGTGGTTTCTTTTAGGGTTACATTTACTCCAACGGTGGAACATTGCAGTATGGCGACGA TTATAGGTCTTTGCATACGGGTCAAGCTCATGAGAAGCTTGCCTTCCCGGTACAAGGTATTCACCATTTTTTCCCCATAG ATGTAACTAGTTAATGGATATTTTGTTACATGATAATTAAATGATGGGTAGTAAGTGCGGGTGAAACTTGTTTCACTTGT GAGTGATGGAGATATGCTTATCATTATAGAAGTTATGATTTGCTCGTTTGAAATGGTGATTTATGACATGACATGAACTT CGGAATTTCTTGTTATTTCTCAAATGGTTTTCTTTGTTCTTGTAAATAATTGATATTAAATACATGAGGCTCATTATGGA AGTCGCGGCACAACGTTTTCCATTTTAGTATGAATTTGTTGTCTTTGATCTTTATAATTTCCTGAGAGGGAAATAGTAAG TGCAGGAGGACAAGAAATCCTCCCAACACAAACAATATCTGCAAAAAAAATACACACACACACTAAAAAATGAGAATATC ACCTTAAAACCAGGGTTTTCAATAGTGCTATAATGTCGTAATGGTGTGAATATCCCATGGTCCCTCCAGGCTGTCTTGTA GGGTTGTAGTTCATAGTAGCGGCTGCTATAATGGAAGAAATAGCGGCCATCGTGGTGCAATTTGACCCTTATTGGAAGTG ATGGACAAAAATCCCAAAAATGCTCACGAAAGTTAAGATCAGGACATTATTTGGGAGATACTTCAAGGTTTCTGTTTGAA AACATAATGAAGATGTCTTGTTGTATTAAAAACCCTCAGTCTGCGCCTTTCATCCCTTCTTTGTCTATAAGACTTTGAGC TGACCCATTGTGGAGTGACTGTTGACCAGACACCACACAGCGCCATGGCGAGCCTCCCTGGCCAAAAGCATCTTTGTTTT CTCAGTTCTCAAAATGTAGTAAGTTTAGAATGCTCTCTCCCCCCCCCCCCCATCATATATATGTGTATACAGTATAAAAA ATTCAACACAACAGGATGGCAGCTATGCGCTTTGCCGCTATAGCATTTCTGGAGTTGGCTGCTACGAGCTGCTATTTGGG ATTGGCAACACTCCGTAAAACAGAGTCCAAGCCTTTGCATATATTAGATAAAGATAGAGTCCTTAAAAAAAACCATTTGC TGAAACAGAAACCCCCGAGGCATCTAACTAAACAAGCAATTCCAAAAAATATAATGAACAGAGCTAAAATTCTAAAACCT AGGCTTGAACTATGAAGTTATTTGCCTAATATCTACGGTATAGACTTTGGTTAGTCTATCACTAAGCCATTCTTTTGTTG ATACTAATGCTCTCTTAAAAGGAATTTACCCTACTACACAAGATTTACATCGGGACATATCCTTCCTCTTGTATATCTTT GTTACTCGCATGATATTCTGCATCTGCAACCATTATATAGCAGCTCAACAATAATCTACTCTTTTGTTTTCCCCCTTTTC TTTAACGTTTATGTGTTGCTTTTCAATTTTTAAAACAGAGAATACAAGCCATTATGATTACTTTACTATCCAGTTGAACT CCTGTGCTTTTTAATTTTTATGTTCTGCTTATGTTTATCTTTGATCATATTTGTTAATTCTGGTTAGGTGGACATCAGGC TAGCTCCTGGATCTCATGCAACTGAAGCTGCAGGTTTTTCCTCTTCTTTCTCTCTTTCTCCCTCTGTATGTGATACCGCG TCTGTTTTTTGTAAAGGATTCCATTTGTGTGCTGATCATTCTACAGCACTTAAAATATTAAACTAGAGGAGAAGTCTTAC TACTTACGTGATAATCACATCTTGCTCTTGAAGAAATGCATTCTGTTGTTAGACCTTTTATCTTATTTATATTTAGATTT ATTTGGGGTGGAAATCATAGATTTATGTTTAGATTTAGCACTTCAATTTATTGGATGATTATCTGTTTTACACAAGTCTG TCTGAAGTTGAGGAAAATTTATGAAGTGAAAAGTAAAAAAGAGGCAGTGAAATGCCTCCAGTTTCTCCGACATTGGTTGA TGTTTTGAATTCCCCACTTGTGAATCATTAATCATGACTGGACCTTCATTCTTATTATATCAATTTTTTTGTTCCAAATT TGTTTGCAGTTAACAAACAACTAAATGATAAAGAGCGTGTGGCTGCTGCACTGGAAAACCCAGGCCTTGTGAGCATGGTT GATGAATGCCTTGCTCCATCTTATGATTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0338300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCAACGTAGTTATGGTTACATTTACTCCAACGGTGGAACATTGCAGTATGGCGACGATTATAGGTCTTTGCATACG GGTCAAGCTCATGAGAAGCTTGCCTTCCCGGTACAAGGTGGACATCAGGCTAGCTCCTGGATCTCATGCAACTGAAGCTG CAGTTAACAAACAACTAAATGATAAAGAGCGTGTGGCTGCTGCACTGGAAAACCCAGGCCTTGTGAGCATGGTTGATGAA TGCCTTGCTCCATCTTATGATTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0338300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MINVVMVTFTPTVEHCSMATIIGLCIRVKLMRSLPSRYKVDIRLAPGSHATEAAVNKQLNDKERVAAALENPGLVSMVDE CLAPSYD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.300.130
1 83 83 3.3E-37
IPR034904
PANTHER
PTHR12377:SF4
3 87 85 2.3E-52 –
SUPERFAMILY
SSF117916
3 64 62 2.71E-8
IPR034904
PANTHER
PTHR12377
3 87 85 2.3E-52
IPR039796

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0106035
Biological process Protein maturation by [4Fe-4S] cluster transfer The transfer of an assembled 4Fe-4S] cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0338300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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