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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0339400 |
| Transcript ID | LotjaGi2g1v0339400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A0R0H309|A0A0R0H309_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0339400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81647580..81650106) extracted from Lotus japonicus Gifu genome v1.2.
TGATACCTAAATGGCTAAATTGATAGGATTCCTTCTCCCCTCTCAATCAAACTCTCCTCTCATAAAATCTTGTTGCATAG TCTTCTCATGAAGAAAGGGAGATGAAGATTTTGATCTGAAACGCACAAATATCTGTGCATGACATCAAGTTTTGTTGTAT CTTCAAGAGGTACATAATTTATAACGGTTTTATTATGATGTTAAAATACGTACATTGTATACGTTCCGTTAAATATCTTT TTTCCAGTAGTATTAGAGCAGCTTATACTGAAGATTGGGACCCTAAAATTTTACTATTAAGTTTGCGAGTTAATTGAAAT TTAGGAATTTAGGGTTTGTTGTTTTTTAGAAAATTTTCTTTATCAATTGGTTCATGATCTCGTTGGTACACAACCGTCTG GGTTAAATATTGAAGACACAGGAACTCAGAAATCAAATGTGTGGTGCTGCCTTTAACGTACTTATTTAGTTTTCAGTTAG AAAGTCTGTTTGAAGCATTGGAATTCGAGATCACGATTTCATTTTGAGTGGATGTGCTTTCACATTCACCACATTCACCC AACTGAAACATAGTTAAAAATCATTGCTATCATCTATTTATTCAAATTCTATCTTCTTCAATTTTTATAGGAACTTGCTA TAAACAAACATGGAATCCCCCAACTCCAAGAGGCACAAATCCAGTGAGGATCAGGACATGATAAGTAACCTCCCTGACTT CATTAGTGGTCGCATTCTTTCTCTTCTTCCTACAAAAGATGCAGTCCGTACAAGTGTTTTATCCAAGAGTTGGACATACA AATGGACATTCATCACCAATCTGCACTTTGAAGATCATACAGGGCCCTATTATTGCACAAAAATAAGGAAAGATTTATTT GTGAGCTTTGTGAACAGGGTACTACTTCGTCTGAATAGTTCAAGCATCCAAAGTTTTTCACTTGCTATATCAGACGAGTA TGAACCTCTCCATGTGGATCAGTGGATATCTGCTGTTGTAAGCCGGAAACTCAAAAAGCTTTGTGTCAACTCAAAGTTTC AACTACAAACCCTTTCCTCTCATTCCCTTATGAAATACAAGTCCTTAGAGGAACTGGTGCTAAATGTGCTTCAGTGTGAG ATTGATGTTCCCACCTTTGCTCTTTTTTCATCCCTTACAGTCCTGAATTTGTCTGGAGTCCAGTTTAGTGTTATCACTTC TAACAAATCTGGAAATGTTCACCTTAATTTCCCAGTTCTGAGAACCTATACGACAAGTAATTGTACATGGTCATCAAACG TAAAGTGTGTAACCTTACAAGCACCTCTGCTTCAAATGGTTTCTATACATGACTATAGCTATCCAACTAATATTCCATAT CCTACCATAAAGTGTTGTGCTCCGCGTCTTACAGAATTGTCTTATGATGGTTATCCATTCCCAGACCTCATTATGTTTGA TCTATCTGCAGCATATAATATTGCTTCTGCTGATATTTGTATTGGTTTTTACAAGAAAGAAAGTTTGCAAAAAATTATGG CTCTTTCTATCAAGATTCTGAAGCAATTTCCAAATGTGAAACGTTTGAGGTTCCAAAAGTGGTTGAGTCCGGTAGGACCA CTATAAGCAGCAAAACTCTATTCTTCTTCATTCCATTGACTTCATTTTTTTAATTACCAAACTAAACAATTTATTATTTT TAAACAGGTGTTGCTAGCAAAAGGTTCATTGACAGATCTTCCTTCATTCGAAAAGTTAAGTTTTCTGCAGCTAGGAGGAG ATGTTACTTGTGAAATTCTTATGGCTTTGCTTCTAAAAACACCATATTTAAAGACTCTTATTTTTCAGGTAGGCTCATTG ACTAATTTGATCGACGAGTTACGAGCTAATTGAATTTTATAAACATACTTGCATTGACTAATTTGATCGACGAGTTACGA GCTAATTGACTTTTTGCATATTTGCATTTTGTGACTACTAGCTATTAGCTATAGGCTTTATATCTAATTGAGTTTTCCAT TGGGTCTTCTTTGAAATTTGCGATACTATTATACATAATAATATTTTTCTGTGATGATGTTTAGGATCTACTCCAGTCTG ACCAAGAACTGTTGAATTATGACCCTGTGCCTGGTTGTTTTTTAAATACTCTTCAAGTTGTAGAGTTTAGGTGGTTTGAT GGTTCTGAGCATCAGTTAAATTTTGCAAAGTTTGCAATGGAAAATGCTGTTGCCTTGAAGAGGATGACTCTCTTCTCCAA CTGGAAGCTACATGGCTCAAAATTGGAAGAAGTAAAAGAGATGTTGTCCTCATTTAAGAAGAAATGTAGTAGTTTTATGA GTTTGGAATTTTCTTCAGCGCCATGACTAGAACTCGTGTTGGAGAAGTTTTGAGCATGCCCTACAACAGAGGGCAGTTAC CAAGAGTGGAGTTCGCGTGTCCCAAAGGGAAGAGCTCTGGAGCTCCCTCTCCCTTAAGAAATGTTGTAGTTGTATGATTT TGGAATTTTTGAACTTAAGTTAATTGAGGTTTACAAGGACTGCAGGA
CDS sequence (LotjaGi2g1v0339400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCCCCAACTCCAAGAGGCACAAATCCAGTGAGGATCAGGACATGATAAGTAACCTCCCTGACTTCATTAGTGG TCGCATTCTTTCTCTTCTTCCTACAAAAGATGCAGTCCGTACAAGTGTTTTATCCAAGAGTTGGACATACAAATGGACAT TCATCACCAATCTGCACTTTGAAGATCATACAGGGCCCTATTATTGCACAAAAATAAGGAAAGATTTATTTGTGAGCTTT GTGAACAGGGTACTACTTCGTCTGAATAGTTCAAGCATCCAAAGTTTTTCACTTGCTATATCAGACGAGTATGAACCTCT CCATGTGGATCAGTGGATATCTGCTGTTGTAAGCCGGAAACTCAAAAAGCTTTGTGTCAACTCAAAGTTTCAACTACAAA CCCTTTCCTCTCATTCCCTTATGAAATACAAGTCCTTAGAGGAACTGGTGCTAAATGTGCTTCAGTGTGAGATTGATGTT CCCACCTTTGCTCTTTTTTCATCCCTTACAGTCCTGAATTTGTCTGGAGTCCAGTTTAGTGTTATCACTTCTAACAAATC TGGAAATGTTCACCTTAATTTCCCAGTTCTGAGAACCTATACGACAAGTAATTGTACATGGTCATCAAACGTAAAGTGTG TAACCTTACAAGCACCTCTGCTTCAAATGGTTTCTATACATGACTATAGCTATCCAACTAATATTCCATATCCTACCATA AAGTGTTGTGCTCCGCGTCTTACAGAATTGTCTTATGATGGTTATCCATTCCCAGACCTCATTATGTTTGATCTATCTGC AGCATATAATATTGCTTCTGCTGATATTTGTATTGGTTTTTACAAGAAAGAAAGTTTGCAAAAAATTATGGCTCTTTCTA TCAAGATTCTGAAGCAATTTCCAAATGTGAAACGTTTGAGGTTCCAAAAGTGGTTGAGTCCGGTGTTGCTAGCAAAAGGT TCATTGACAGATCTTCCTTCATTCGAAAAGTTAAGTTTTCTGCAGCTAGGAGGAGATGTTACTTGTGAAATTCTTATGGC TTTGCTTCTAAAAACACCATATTTAAAGACTCTTATTTTTCAGGATCTACTCCAGTCTGACCAAGAACTGTTGAATTATG ACCCTGTGCCTGGTTGTTTTTTAAATACTCTTCAAGTTGTAGAGTTTAGGTGGTTTGATGGTTCTGAGCATCAGTTAAAT TTTGCAAAGTTTGCAATGGAAAATGCTGTTGCCTTGAAGAGGATGACTCTCTTCTCCAACTGGAAGCTACATGGCTCAAA ATTGGAAGAAGTAAAAGAGATGTTGTCCTCATTTAAGAAGAAATGTAGTAGTTTTATGAGTTTGGAATTTTCTTCAGCGC CATGA
Protein sequence (LotjaGi2g1v0339400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPNSKRHKSSEDQDMISNLPDFISGRILSLLPTKDAVRTSVLSKSWTYKWTFITNLHFEDHTGPYYCTKIRKDLFVSF VNRVLLRLNSSSIQSFSLAISDEYEPLHVDQWISAVVSRKLKKLCVNSKFQLQTLSSHSLMKYKSLEELVLNVLQCEIDV PTFALFSSLTVLNLSGVQFSVITSNKSGNVHLNFPVLRTYTTSNCTWSSNVKCVTLQAPLLQMVSIHDYSYPTNIPYPTI KCCAPRLTELSYDGYPFPDLIMFDLSAAYNIASADICIGFYKKESLQKIMALSIKILKQFPNVKRLRFQKWLSPVLLAKG SLTDLPSFEKLSFLQLGGDVTCEILMALLLKTPYLKTLIFQDLLQSDQELLNYDPVPGCFLNTLQVVEFRWFDGSEHQLN FAKFAMENAVALKRMTLFSNWKLHGSKLEEVKEMLSSFKKKCSSFMSLEFSSAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 428 | 418 | 1.2E-88 | – | |
| PANTHER | 11 | 428 | 418 | 1.2E-88 | – | |
| Gene3D | 13 | 310 | 298 | 1.2E-17 | ||
| SUPERFAMILY | 15 | 90 | 76 | 8.63E-9 | ||
| SUPERFAMILY | 118 | 363 | 246 | 5.89E-7 | – | |
| Pfam | 375 | 417 | 43 | 6.0E-13 | ||
| SMART | 378 | 451 | 74 | 6.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0339400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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