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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0356100 |
| Transcript ID | LotjaGi2g1v0356100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT1G20610.1 Cyclin B2;3; Swiss-Prot: sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1; TrEMBL-Plants: tr|V7CIF2|V7CIF2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0356100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:83252854..83256643) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCCGTTAAATTTCAAAACCCTTTTGTGGACAAATACCCCATCTTCACAGGTTCAGTCCCTTCACTGCAGTGGTCTGT GTACCCTTTTCCTCTGCTGCTACCTCCTCCTTCTTATACCACCTTCCATCCACTTTCATCAGATTGGAATTCATGCCCTC TTTCTGAGATTTGAGGCTTTTTCTCTGGTGGGTGTGATTCAGTGAGAGGGTGAGAGAGAGTGTGTGTGTGTGTTCATCAT CAATCAACAAAGGAAAATGGTGATTTCTGATGAAAATGCTTCTTCTAACAACTCACTAAAGCCTGCAAGTTTTCAAGGTA AAAAAAATTATGGGGTTCAATCAAAATTTTGAATTTCAATGTTGATGGGTTGAAGATTTTGAATATTTTTTTTTTCAATT TCTTGTTGTTCTTTCTAGATTGTGTGGGTGGTGCCAGAAAGGTTGGGCAGAACAGAAGAGCGTTGGGGGTGATCAATCAG AGTTTGGTGGAAGGTCGACCTTACCCATGCGTCGTTAACAAGAGGGCATTGTCAGGGTAATTTTTTCGAATTAGATCAAT CATGCCCTTTTCTTTTTCTTTGTAAATTTGTTGTCTTTTTCGGTTTTGAATGTTGGTTTTTTAATTTTTGGTTTGTGGGT ATGCAGAAAGATTGATGTTTGTGTGAAGAAGCAGGCAGATCCGGTGCATCGTCCCATCACAAGGTGAGGATGATGAATTG ATGATGACCCTTTTTTTCTGATCTGATTCAGTATTTGAATTTTAAAATTGAAATGAGTGACATTGCACATTGACCAATTG TTTTCAAAGTGACCAAAATGGGGGAGGCATAATGATATTGTAATTTGTTTTATTTCCATGATGGATTATTCATATTGATT TAGTGTTTTGTTTTCTTAGGAGGTTTGCTGCACAAATTGCTAGCAGCACTCAGCAATCTCAAGCTGAGGTAGAGTCTTTT ATTCTTCATTTTGCTGCACTGCATAGATCTTGAACTATTGAAACTAAGATTAGGTTGGGATTAATTTTGAACAGGAAACC AAGAAGTCAAACTTGACAGTTGGAAATTCGAATGGATTTGGGGAGTGTATATTTGTTGATGATGAACTCAAGCCAGAAGA TCAGCCAGTGCCTATGTCTCTGGAGCAAACAGTGCATAGTGAATCTGATCAGATGGTATTTCTTTTAACATCTCTTTCAT TTATGTTTATGTATTTCCTATGTCAGAATTTAGTTGGTGACTGTGAATTAATTGGCCTATTAGGAGGAAGTGGAGATGGA GGATATTATTGTAGATGAGCCTATTGTGGACATTGATGCCGGAGATGCGAATAATCCTCTTGCAGTTACTGATTATATTG AAGGTCTTTATTCCTACTACAGAAAAATTGAGGTACATTGGGAATTAAGATCCACCAACTATTGTTTCCCCCCCTATTAT AACTTGCAAACAATATTCAATTTATTGAATTAGCATAGACTTGCTATGAATTAGAGCATACTTCACTTTCAATGATATTG GAAATCAAAACTGAATTCAGAATGTCAACTAATATGAGAATGCTTTCCTATCAAATTCTGATAACTCAAGGTTTTTACTA CTTGCAGAGTACTGGCTGTGTCTCACCTAATTATATGACACAACAATGTGACATTAATGAAAGGATGAGAGCTATACTGA TTGACTGGCTTATTGAGGTATATTAAATTTAAATGTTCCTTCCTGAATCAATGTGCCCAAAATATTGCTAATAACTAGCC TCATGGATTGATTGTGATTATCATTAATTTTGTTTTCAATCAATCTAGAAGCTCTAGTACTGATATGCTTCTTTTGAAAT CTTCTTCAGGTCCACGACAAATTTGACCTCATGCATGAGACATTGTTTCTCACTGTGAATCTGATAGATAGGTTTTTGGA GAAGCAGACAGTGGTACGGAAAAAGCTCCAATTGGTTGGTCTAGTGGCCATGCTTTTGGCCTGCAAGTATGAGGAAGTTT CGGTGCCCGTGGTGGGAGATCTGATTCTCATATCTGACAAAGCATACTCAAGGAAAGAAGTTCTGGAAATGGTGAGTAGC ATTTGTTGACACCTTTTCACCTTTTAACTTTTGCAACTATGACAATTAGTGTGTGTTATGCCTTATCACAATTGGTTTTT GATGAAATCCATTCTGGTATATGATTGAAAGTGAAGTTATTTAGTTTTGGATACGTTTATGGCAAAAGTAATTTTTGTAT GGTTTTGTTAGTTGTTAAATTTTACAACTATGACAATTAGTGTGTGTTATGCCTTATCACAATTGGTTTTTGATGAAATC CATTCTGGTATATGATTGAAAGTGAAGTTATTTAGTTTTGGATACGTTTATGGCAAAAGTAATTTTTGTATGGTTTTGTT AGTTGTTAAATTTTACAATTTTTTTGTTCAACCAGAAGCTATCCTCTTCTACGCAAAATTGATTTTGGAACTGAAATTAA TTCATTCTCCCATTATGACTTGCATCCAAAGTGATTTTGTAATAAGGTGTTGGACTGTTTAATTGAGATTTCTTGTTAAA CCTTGCAGGAGAAGCTGATGGTGAACACATTGGAGTTCAATATGTCTGTGCCAACAGCATATGTTTTCATGAGAAGGTTC CTAAAGGCAGCTCAAGCAGACAGAAAAGTCAGTACACTCAATCTTCTGCCTACTATTTATTTTTCATGGCATTTTTTTTC ATGAATCTAATTTGTTTTTTATTCCTTATCTTGTGGAACAGCTTGAGCTGCTAGCTTTCTTCTTGGTTGAGCTGTCTCTA GTTGAGTATGAGATGCTGAAGTTCCCTCCATCTCATATTGCTGCAGCTGCAGTCTATACAGCTCAATGCGCAATCTATGG CTTCAAACAGTGGTGCAAGACATGTGAATGGCACACCAACTACTCAGAAGACCAGCTATTGTAAGCATTATTTGGTTCTG TGCTTTTCATGTTCAAATTATCTATTAGTTTGACATTCAAATTACTAATAGCTTATTCTGTGACTTGCAGAGAGTGCTCT AGTTTGATGGTTGGTTTTCACAAAATGGCTGGGACAGGGAAACTTACTGGGGTGCATAGGAAGTATTGCTCATATAAGTT CAACTATACTGCTAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACAACAACCCATTGTTGTAGCAGGCCATGTATAGCT TCTAACAACAACAACATTTGACTTTGGTAATTGGGGGCCTGTTTGATTGAGACGATCTATGCACATGTTAGCAACTTCTT GGGTTGCACTGGGGATGGGAGATTTCTAGGATTCTGAAATCCTGTGGTGTTCTGTTTTACTTTATTGTTTACTTTACATT TTCTGTGATGTTCTAATTGAACATAACTTGTTCATTTCAAGCTCTATTTCTGTTATTATCCCATTGAACAAAATAATGGA AATGATTACATACAAAAAGTTTCTTTGATTCAAGGAAAAGTCTTGGGTTATATTTTTGCTTTTTTGTCTACCCTCTGAGA GATTTTTTGGATATCTGAAGTTGGATAATCCATCTTAAGCTCTGAATGCCTATCATAACTTTGAGTTTGAAGTTTGGTTA AGGCAATTTGTTCTTCCAATCTTCAAGCACAATTTACTTTCTTGCTTATGTATCAATACTCGGATTGATCATTCATGCAT TGTTCTCCCAATAAATAACTTGTGTTCGTGGTCTGGACTTCATTCTAACACAAAAGACAAAAAGACCTAGAAGGGAAAAA ATCTTAATTTGCTTAGAAACTCATCAAAAG
CDS sequence (LotjaGi2g1v0356100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGATTTCTGATGAAAATGCTTCTTCTAACAACTCACTAAAGCCTGCAAGTTTTCAAGATTGTGTGGGTGGTGCCAG AAAGGTTGGGCAGAACAGAAGAGCGTTGGGGGTGATCAATCAGAGTTTGGTGGAAGGTCGACCTTACCCATGCGTCGTTA ACAAGAGGGCATTGTCAGGAAAGATTGATGTTTGTGTGAAGAAGCAGGCAGATCCGGTGCATCGTCCCATCACAAGGAGG TTTGCTGCACAAATTGCTAGCAGCACTCAGCAATCTCAAGCTGAGGAAACCAAGAAGTCAAACTTGACAGTTGGAAATTC GAATGGATTTGGGGAGTGTATATTTGTTGATGATGAACTCAAGCCAGAAGATCAGCCAGTGCCTATGTCTCTGGAGCAAA CAGTGCATAGTGAATCTGATCAGATGGAGGAAGTGGAGATGGAGGATATTATTGTAGATGAGCCTATTGTGGACATTGAT GCCGGAGATGCGAATAATCCTCTTGCAGTTACTGATTATATTGAAGGTCTTTATTCCTACTACAGAAAAATTGAGAGTAC TGGCTGTGTCTCACCTAATTATATGACACAACAATGTGACATTAATGAAAGGATGAGAGCTATACTGATTGACTGGCTTA TTGAGGTCCACGACAAATTTGACCTCATGCATGAGACATTGTTTCTCACTGTGAATCTGATAGATAGGTTTTTGGAGAAG CAGACAGTGGTACGGAAAAAGCTCCAATTGGTTGGTCTAGTGGCCATGCTTTTGGCCTGCAAGTATGAGGAAGTTTCGGT GCCCGTGGTGGGAGATCTGATTCTCATATCTGACAAAGCATACTCAAGGAAAGAAGTTCTGGAAATGGAGAAGCTGATGG TGAACACATTGGAGTTCAATATGTCTGTGCCAACAGCATATGTTTTCATGAGAAGGTTCCTAAAGGCAGCTCAAGCAGAC AGAAAACTTGAGCTGCTAGCTTTCTTCTTGGTTGAGCTGTCTCTAGTTGAGTATGAGATGCTGAAGTTCCCTCCATCTCA TATTGCTGCAGCTGCAGTCTATACAGCTCAATGCGCAATCTATGGCTTCAAACAGTGGTGCAAGACATGTGAATGGCACA CCAACTACTCAGAAGACCAGCTATTAGAGTGCTCTAGTTTGATGGTTGGTTTTCACAAAATGGCTGGGACAGGGAAACTT ACTGGGGTGCATAGGAAGTATTGCTCATATAAGTTCAACTATACTGCTAAATGTGAACCAGCAAGTTTTCTTCTGGAGAA CAACAACCCATTGTTGTAG
Protein sequence (LotjaGi2g1v0356100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVISDENASSNNSLKPASFQDCVGGARKVGQNRRALGVINQSLVEGRPYPCVVNKRALSGKIDVCVKKQADPVHRPITRR FAAQIASSTQQSQAEETKKSNLTVGNSNGFGECIFVDDELKPEDQPVPMSLEQTVHSESDQMEEVEMEDIIVDEPIVDID AGDANNPLAVTDYIEGLYSYYRKIESTGCVSPNYMTQQCDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLEK QTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMEKLMVNTLEFNMSVPTAYVFMRRFLKAAQAD RKLELLAFFLVELSLVEYEMLKFPPSHIAAAAVYTAQCAIYGFKQWCKTCEWHTNYSEDQLLECSSLMVGFHKMAGTGKL TGVHRKYCSYKFNYTAKCEPASFLLENNNPLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 425 | 406 | 5.2E-197 | ||
| PANTHER | 20 | 425 | 406 | 5.2E-197 | – | |
| SUPERFAMILY | 165 | 301 | 137 | 4.4E-47 | ||
| Gene3D | 178 | 414 | 237 | 2.8E-88 | – | |
| Pfam | 178 | 302 | 125 | 1.1E-43 | ||
| Gene3D | 190 | 302 | 113 | 2.8E-88 | – | |
| CDD | 205 | 294 | 90 | 7.34162E-25 | ||
| ProSitePatterns | 206 | 237 | 32 | - | ||
| SMART | 211 | 295 | 85 | 1.0E-26 | ||
| CDD | 302 | 389 | 88 | 2.35476E-18 | ||
| SUPERFAMILY | 303 | 421 | 119 | 1.43E-36 | ||
| SMART | 304 | 421 | 118 | 8.1E-32 | ||
| Pfam | 304 | 419 | 116 | 2.2E-31 | ||
| SMART | 308 | 390 | 83 | 2.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0356100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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