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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370300 |
| Transcript ID | LotjaGi2g1v0370300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT5G59865.1 glycine-rich RNA-binding-like protein; Swiss-Prot: sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial; TrEMBL-Plants: tr|C6SZT2|C6SZT2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0370300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86746185..86749191) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTGTGGAGGTAGGTGGTTGAGGCTGACGCAGATATGGTGAACTCTGCAATATCGAGGAAGGAGAAGCCCAAAGAGGT TTTTGAGGGTAAAAGGGTGCAATTCATTCATTCAACTAATGTTCATTTTATTTGTCATTTTTTTTAAAGACTGGGCCATT ATATGATCTGACCCAGAATCAGCTATGCATTGAGTCATTGACCCAAACAGGACTTGAAGGACCCGAAAAAAATATAGAGA AACAAACAGGGCTAGAAGAAGAGAAGTTCAGGGTTATGATCAAAACGACGCTGTTCAAGGTCACTCCCCTCTGCAACCAT TGCAGAAACCGCATACCTTGTTCGTTGCATCAATTAAGAAATCAAAGTTATGCGCTTAACCAGTCCAATAGCAAATTGCG TCGCTCTTCTCCACCGCAACTCTCTCCCACCACGATTCCTATTCGCACGCCATCATTCACATGCCAATTTGTTCGTCGCA GGTCTTCTTCTCCCACCCCTTTCACTTCAATTGCATCTATTGTGATTTGATTGAATTATAATCCCGAAATTGACCTCTGC ATTGCAATTGGAACCTAGGACTTTCCCACGATACCAATGAAACTGTTCTGAGAGATGCATTTGGGCAACATGGGGAAATC CTCGAAGGTAAGAACAAGAAAACGATATTTTCTTATTATTTTTTATCCCTAAATTAGTTTTGTTGAGAAATATATCAAAT ATCTATGTTGTTGTGCAGTTAGAGTTATATGTGATCATGTGACTGGGAAGTCAAAAGGGTATGGATTTGTTCGGTTTACT TCTGAAACTACAGCTGCCACAGCTCGCCATCAAATGCACGGCCAGGTTCATTTTCCACCTGAAAATACTTGGGGTACTTT AGCTGAAGATGTTATGTACATTTCACCTAATACAGTTATGAACTTTGCTTGTTCTTGATCATTTCTCAGGTGTTAGATGG CAGTCGCATTCGAGTGAGTTGTGCCCGCAAAGTGTGGCCACCAAATCTATCAAGCAATTCACAAGATGTTACAACATGTT GAAACTGCTTCAGTGTGTGTGAAAGCTAGAGTTTAGACTAATTTGATTTTGGGAAATTGTTTCTTGATGAAAAGCAAGTT TGAAGTCATTTGATTTCAGAAGAGTAATGTTTGAATACCTCTCTCTAACTAAGGGAGATCTAGAACTACAAATTCCCAAT CGAAAATCATGATCAAAGCTTTGCTAGACAATCAACTACCTAATTAGCCTCGCTCAAAACATATTGGAACCGTATCTTCC TATCTTTCTTTCTCCAATCCTGGATTTCAAGTATGCATATGTTGTTCTGCATTATTGATCATGTTGATGACTTCCAAGGA GTCGCTTTCTATAACCCTGCAAATCATATAAGAGTTGCTTGATTCTTACATTCATTAATCACAAGTAACATTCTACATGT AACATGTCATATATCAAATGCACAAGATGATTATTTCATGGAAACATTTATTAAAAAAAATGCCAAGATCCAAGATAGCA CTAGCTAGTCCTGGTCTCTTGCATCATTTGCAGGTTAGTCTTGAACCACCTTTTTAAAGATAAATGAATTAAGCACCTAT CGATTAAAGCTTCAAACTAATTCTGCATATCAATCTACAGATGCCATGTTATCTTGTCATCTATAGCTGTACAGGCAAAT AAAATGCAACTAACAGAAGATATCATGGATGTATGCATCAGGAATTTTGAGTGATTCATTCACTTCATGTAGGAGCTATG CACCAAAAGAATTCGGTACCTGAGAGCTGGGAGAGCAGTTTTAAATGTAACATATAAGTCTTTCATTGTTAATAGAATGT GAAGATTGTAATTAGCATTAGCACAGCAGGTAACTGTAAACCAATGCTGAAGCTCTCTTGACAATTACCATGAATAGTTC AAGTTATGCTGTGAAGACTGAAGTTATCATAAGAAACGTCTACATTTTAACAAAACATATCAACAATACCTAGAATAAGG ATACATACGATATTTTTGTAAATTTAAATGACTGCTGAATGAGAAAAGGGAACAAAATACCGAGAATCATATCTTGCAAG GTTGCAAATTGAGTACTTTCCGTAAGTCATGTAAGTACTTTCCATGGAAACAAAACAATTGACGAACGCAAAACTCATAA TGAAACCTTTGATATAATTAGGGTTCATAGAAAAGCGATTACTAAGAACAACAAAGCATGTACCAGACCCACAATTTACT GTCTTAAATCATCAATTGTTCAATTTGACATACACAAAATGATCCATAAGACTTCATTTCATCAATTACAGATTTAAAAG AAAAAACGAAAAACAACTAATTAAAATGTAAAAACACAGGTAATTAGGACTAAAACCTAATTCAACAAACAACAGAGCCC ACAGAAGTTCAAGAGCTTGTGAACTTGGTCACAGCCTTGGTACCCTCTGACACGGCATGCTTGGCCAATTCTCCGGGCAG AACAAGCCTGACCGCGGTCTGGATTTCCCTGGAAGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGCCTGGAGGATTCCT GAGCGAGCTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTGGAGATACCGATGTCTGGGTGA ACCTGCTTCAGGACCTTGAAGATGTAGATCTTGTAGGTCTCTACGCTCTTCTTGCTTCTCTTCTTCTTCTTGTCTCCGGC AGCGGCTGCGCCCTCCTTGGGAAGCTTCTTCCCGGCCTTGGGTTTCTTCTCCGCCGGGGGAGCCTTCTCGGCCACCGTCG ACTTCTTCTCCTCCGCGGGCTTCTTGTCTGCCTTGGGTGCCATCACGAATTGGGAAAAAAGATTCTAGGGTTTGAAATTG GAATTGAGATCGCGGATTGGGAACAGAGAATTAATTGGGTTTTCGTTGAATGAAAAATATCAACGTTGAAGTGACTTATA TATAAAGAGTTTTCCGCGTTCTTATTGGCTGCTGGCGTTACGCACGG
CDS sequence (LotjaGi2g1v0370300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTAACCAGTCCAATAGCAAATTGCGTCGCTCTTCTCCACCGCAACTCTCTCCCACCACGATTCCTATTCGCACG CCATCATTCACATGCCAATTTGTTCGTCGCAGGACTTTCCCACGATACCAATGAAACTGTTCTGAGAGATGCATTTGGGC AACATGGGGAAATCCTCGAAGTTAGAGTTATATGTGATCATGTGACTGGGAAGTCAAAAGGGTATGGATTTGTTCGGTTT ACTTCTGAAACTACAGCTGCCACAGCTCGCCATCAAATGCACGGCCAGGTGTTAGATGGCAGTCGCATTCGAGTGAGTTG TGCCCGCAAAGTGTGGCCACCAAATCTATCAAGCAATTCACAAGATGTTACAACATGTTGA
Protein sequence (LotjaGi2g1v0370300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLTSPIANCVALLHRNSLPPRFLFARHHSHANLFVAGLSHDTNETVLRDAFGQHGEILEVRVICDHVTGKSKGYGFVRF TSETTAATARHQMHGQVLDGSRIRVSCARKVWPPNLSSNSQDVTTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 114 | 100 | 8.2E-27 | ||
| PANTHER | 21 | 108 | 88 | 1.1E-35 | – | |
| PANTHER | 21 | 108 | 88 | 1.1E-35 | – | |
| SUPERFAMILY | 27 | 114 | 88 | 2.69E-28 | ||
| ProSiteProfiles | 32 | 110 | 79 | 18.479 | ||
| SMART | 33 | 106 | 74 | 6.5E-25 | ||
| Pfam | 34 | 104 | 71 | 4.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0370300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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