Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0370300 |
Transcript ID | LotjaGi2g1v0370300.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding protein; TAIR: AT5G59865.1 glycine-rich RNA-binding-like protein; Swiss-Prot: sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial; TrEMBL-Plants: tr|C6SZT2|C6SZT2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0370300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86746260..86749029) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCTGACCCAGAATCAGCTATGCATTGAGTCATTGACCCAAACAGGACTTGAAGGACCCGAAAAAAATATAGAGAAA CAAACAGGGCTAGAAGAAGAGAAGTTCAGGGTTATGATCAAAACGACGCTGTTCAAGGTCACTCCCCTCTGCAACCATTG CAGAAACCGCATACCTTGTTCGTTGCATCAATTAAGAAATCAAAGTTATGCGCTTAACCAGTCCAATAGCAAATTGCGTC GCTCTTCTCCACCGCAACTCTCTCCCACCACGATTCCTATTCGCACGCCATCATTCACATGCCAATTTGTTCGTCGCAGG TCTTCTTCTCCCACCCCTTTCACTTCAATTGCATCTATTGTGATTTGATTGAATTATAATCCCGAAATTGACCTCTGCAT TGCAATTGGAACCTAGGACTTTCCCACGATACCAATGAAACTGTTCTGAGAGATGCATTTGGGCAACATGGGGAAATCCT CGAAGGTAAGAACAAGAAAACGATATTTTCTTATTATTTTTTATCCCTAAATTAGTTTTGTTGAGAAATATATCAAATAT CTATGTTGTTGTGCAGTTAGAGTTATATGTGATCATGTGACTGGGAAGTCAAAAGGGTATGGATTTGTTCGGTTTACTTC TGAAACTACAGCTGCCACAGCTCGCCATCAAATGCACGGCCAGGTTCATTTTCCACCTGAAAATACTTGGGGTACTTTAG CTGAAGATGTTATGTACATTTCACCTAATACAGTTATGAACTTTGCTTGTTCTTGATCATTTCTCAGGTGTTAGATGGCA GTCGCATTCGAGTGAGTTGTGCCCGCAAAGTGTGGCCACCAAATCTATCAAGCAATTCACAAGATGTTACAACATGTTGA AACTGCTTCAGTGTGTGTGAAAGCTAGAGTTTAGACTAATTTGATTTTGGGAAATTGTTTCTTGATGAAAAGCAAGTTTG AAGTCATTTGATTTCAGAAGAGTAATGTTTGAATACCTCTCTCTAACTAAGGGAGATCTAGAACTACAAATTCCCAATCG AAAATCATGATCAAAGCTTTGCTAGACAATCAACTACCTAATTAGCCTCGCTCAAAACATATTGGAACCGTATCTTCCTA TCTTTCTTTCTCCAATCCTGGATTTCAAGTATGCATATGTTGTTCTGCATTATTGATCATGTTGATGACTTCCAAGGAGT CGCTTTCTATAACCCTGCAAATCATATAAGAGTTGCTTGATTCTTACATTCATTAATCACAAGTAACATTCTACATGTAA CATGTCATATATCAAATGCACAAGATGATTATTTCATGGAAACATTTATTAAAAAAAATGCCAAGATCCAAGATAGCACT AGCTAGTCCTGGTCTCTTGCATCATTTGCAGGTTAGTCTTGAACCACCTTTTTAAAGATAAATGAATTAAGCACCTATCG ATTAAAGCTTCAAACTAATTCTGCATATCAATCTACAGATGCCATGTTATCTTGTCATCTATAGCTGTACAGGCAAATAA AATGCAACTAACAGAAGATATCATGGATGTATGCATCAGGAATTTTGAGTGATTCATTCACTTCATGTAGGAGCTATGCA CCAAAAGAATTCGGTACCTGAGAGCTGGGAGAGCAGTTTTAAATGTAACATATAAGTCTTTCATTGTTAATAGAATGTGA AGATTGTAATTAGCATTAGCACAGCAGGTAACTGTAAACCAATGCTGAAGCTCTCTTGACAATTACCATGAATAGTTCAA GTTATGCTGTGAAGACTGAAGTTATCATAAGAAACGTCTACATTTTAACAAAACATATCAACAATACCTAGAATAAGGAT ACATACGATATTTTTGTAAATTTAAATGACTGCTGAATGAGAAAAGGGAACAAAATACCGAGAATCATATCTTGCAAGGT TGCAAATTGAGTACTTTCCGTAAGTCATGTAAGTACTTTCCATGGAAACAAAACAATTGACGAACGCAAAACTCATAATG AAACCTTTGATATAATTAGGGTTCATAGAAAAGCGATTACTAAGAACAACAAAGCATGTACCAGACCCACAATTTACTGT CTTAAATCATCAATTGTTCAATTTGACATACACAAAATGATCCATAAGACTTCATTTCATCAATTACAGATTTAAAAGAA AAAACGAAAAACAACTAATTAAAATGTAAAAACACAGGTAATTAGGACTAAAACCTAATTCAACAAACAACAGAGCCCAC AGAAGTTCAAGAGCTTGTGAACTTGGTCACAGCCTTGGTACCCTCTGACACGGCATGCTTGGCCAATTCTCCGGGCAGAA CAAGCCTGACCGCGGTCTGGATTTCCCTGGAAGTGATGGTGGGCTTCTTGTTGTAGCGGGCAAGCCTGGAGGATTCCTGA GCGAGCTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATCCCCATGGCCTTGCTGGAGATACCGATGTCTGGGTGAAC CTGCTTCAGGACCTTGAAGATGTAGATCTTGTAGGTCTCTACGCTCTTCTTGCTTCTCTTCTTCTTCTTGTCTCCGGCAG CGGCTGCGCCCTCCTTGGGAAGCTTCTTCCCGGCCTTGGGTTTCTTCTCCGCCGGGGGAGCCTTCTCGGCCACCGTCGAC TTCTTCTCCTCCGCGGGCTTCTTGTCTGCCTTGGGTGCCATCACGAATTGGGAAAAAAGATTCTAGGGTTTGAAATTGGA ATTGAGATCGCGGATTGGGAACAGAGAATTAATTGGGTTTTCGTTGAATG
CDS sequence (LotjaGi2g1v0370300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCTTAACCAGTCCAATAGCAAATTGCGTCGCTCTTCTCCACCGCAACTCTCTCCCACCACGATTCCTATTCGCACG CCATCATTCACATGCCAATTTGTTCGTCGCAGGACTTTCCCACGATACCAATGAAACTGTTCTGAGAGATGCATTTGGGC AACATGGGGAAATCCTCGAAGTTAGAGTTATATGTGATCATGTGACTGGGAAGTCAAAAGGGTATGGATTTGTTCGGTTT ACTTCTGAAACTACAGCTGCCACAGCTCGCCATCAAATGCACGGCCAGGTGTTAGATGGCAGTCGCATTCGAGTGAGTTG TGCCCGCAAAGTGTGGCCACCAAATCTATCAAGCAATTCACAAGATGTTACAACATGTTGA
Protein sequence (LotjaGi2g1v0370300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLTSPIANCVALLHRNSLPPRFLFARHHSHANLFVAGLSHDTNETVLRDAFGQHGEILEVRVICDHVTGKSKGYGFVRF TSETTAATARHQMHGQVLDGSRIRVSCARKVWPPNLSSNSQDVTTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 15 | 114 | 100 | 8.2E-27 | ||
PANTHER | 21 | 108 | 88 | 1.1E-35 | – | |
PANTHER | 21 | 108 | 88 | 1.1E-35 | – | |
SUPERFAMILY | 27 | 114 | 88 | 2.69E-28 | ||
ProSiteProfiles | 32 | 110 | 79 | 18.479 | ||
SMART | 33 | 106 | 74 | 6.5E-25 | ||
Pfam | 34 | 104 | 71 | 4.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0370300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…