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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0371500 |
Transcript ID | LotjaGi2g1v0371500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glyoxalase family protein superfamily; TAIR: AT1G07645.1 dessication-induced 1VOC superfamily protein; Swiss-Prot: sp|P9WKQ2|Y887_MYCTO Uncharacterized protein MT0910; TrEMBL-Plants: tr|I3SD00|I3SD00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0371500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86825680..86827080) extracted from Lotus japonicus Gifu genome v1.2.
CCCTGATCTGTTTGTTCTCAGTAAAAAACATTGAAGCTAAGTAACAAGTAAGGGCATGCATGAACTCCACGTGTGACACC TGATAAATTGCCACATGCACATGAAATTGACTCGCTCCGGCTTTGAAGATCAAATTAAACTGCAACAGAACAGAGGATGT GAAATTGTGAATGTGAAGAGGAGAGGAAAGAGTATCAATCGATAATCATAGCATATATCAAACACTTATCTTGTGTGAAA TCAATATCATCGATCAATGGCTTCCAATCTCAACCCTGCGTTTGCGTACACGGTGCTTTATGTAAAAGATGTAGCCCAAT CTGTAGATTTCTATGCCAAAGCATTTGGCTATTCTGTTCGTCGCTTAGACGACTCTCACAGGTTAGTATTTAATTATTCA GTTTTATTTAATTACCTATAATTTCATTTCATTCTCCTCTTCAAATCCAAATCACAATATTGAGTTAGTGTAACTAATTA TCATGGATCAAACACTAGTTTATTTATTTTTCAATGATGGTGTTGCCTAATTAGATGGGGAGAGTTGGAAAGTGGTAACA CAACCATTGCTTTCACTCCAATGATCCAACATGAGACCAATGATCTCACAGGTGCGGTCCATGCCACTCAATCTCCTCGA GAAAGACCACAGCTCGAGGTTTGTTTTGTTTACCATGATGTTGATGCTGCTTACAAGGTTCGTACCTACCTATATCATTT ATTGGTTTGTTAATTCTGTTGAATCTTGATCTTATCATGGTTGGTTATATTGAGTTTGGATTTAATGGATCAGAGGGCGG TGGAGAATGGAGCGGTGGCGGTGAGCGAGCCTGAGCTCAAGGAGTGGGGCCAGAAGGTAGGGTATGTCAGAGATATTGAC GGCAACGTCATCAGAATGGGAAGCCATGTCAAATAGGAACATATATATTTCATTCATATGCTGTGTGATGCCTGTTTATG GTTCTGTTTAAGTATAAACAAGATCACTGTACTGTGTGAACTGCTGTACTTGTGGTAAAAAATGATGATCACTACTAGAA TAAAATTATCAACTGCATGCTGTCATGAAGGAATCAACTCTCCTTGCATGTGTGTAAACAGCTGTATTGTGCATACACCT ATAATTCATTGATTGTTGTTGCATATTCGAAGTTTTATAGAGAATTAGAGATGTGATGCAAAAGTGATAATCATAACTTT TATCAACTCACTATATATTTTTCATCATTTGATCACTCTTGGCCGCATGAAGCCATTGAACACCAACACAAATGGAGTGC TATCCATAGAACTAGCTATATTCGGACATCTATTATCAAATGCTTCAAATGATCGTCTGAGAGAATAAAAATTCATTCAT GTTGTATGTATCCTAATACACATTAAGTTCATATTTTAATA
CDS sequence (LotjaGi2g1v0371500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAATCTCAACCCTGCGTTTGCGTACACGGTGCTTTATGTAAAAGATGTAGCCCAATCTGTAGATTTCTATGC CAAAGCATTTGGCTATTCTGTTCGTCGCTTAGACGACTCTCACAGATGGGGAGAGTTGGAAAGTGGTAACACAACCATTG CTTTCACTCCAATGATCCAACATGAGACCAATGATCTCACAGGTGCGGTCCATGCCACTCAATCTCCTCGAGAAAGACCA CAGCTCGAGGTTTGTTTTGTTTACCATGATGTTGATGCTGCTTACAAGAGGGCGGTGGAGAATGGAGCGGTGGCGGTGAG CGAGCCTGAGCTCAAGGAGTGGGGCCAGAAGGTAGGGTATGTCAGAGATATTGACGGCAACGTCATCAGAATGGGAAGCC ATGTCAAATAG
Protein sequence (LotjaGi2g1v0371500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNLNPAFAYTVLYVKDVAQSVDFYAKAFGYSVRRLDDSHRWGELESGNTTIAFTPMIQHETNDLTGAVHATQSPRERP QLEVCFVYHDVDAAYKRAVENGAVAVSEPELKEWGQKVGYVRDIDGNVIRMGSHVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 136 | 136 | 8.0E-24 | ||
PANTHER | 3 | 136 | 134 | 5.6E-62 | – | |
PANTHER | 3 | 136 | 134 | 5.6E-62 | – | |
ProSiteProfiles | 8 | 134 | 127 | 19.708 | ||
CDD | 9 | 134 | 126 | 1.36033E-38 | – | |
Pfam | 9 | 134 | 126 | 2.9E-11 | ||
SUPERFAMILY | 9 | 134 | 126 | 4.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0371500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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