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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0376500 |
| Transcript ID | LotjaGi2g1v0376500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin d3; TAIR: AT5G67260.1 CYCLIN D3;2; Swiss-Prot: sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2; TrEMBL-Plants: tr|I3SZW4|I3SZW4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0376500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87381528..87387753) extracted from Lotus japonicus Gifu genome v1.2.
CCATTTGCCCCCCTCCTCCACAGATTGCCGTAGCTCCGACTCCGCTCCGCCGTCCGAAGACTGTTCCTGATCTTCTGTCA TACTGGAACCACGCTGGATCGCCGCCGGAGGGTCTGCCGAGACAGCCGCCGAAGCTGCTCCTGAAGGTGACGGTTCTTGG AAGCCTCGGGCATGTGCAGGTTCTCATGAGGCCGGAATCCACCGTCGGCGAGCTGGTGGTGGCGCGGCAGTACGTGAAGG AAGCTTGCCGTCCAACGATGCCTCTGATTTCGACCTTCATTACTCGCAGTTTAGCCTAGAAAGTGAGGTTCCTGTTTCCC TTCACAATCTCTTGATCTTCATATGAAATCATGAATATAAATTCTGATGATCGTGAAATTGATCTGGTTGTTTTGTTTAT CTATGAAGGTTTGCATAGGGAGGAGAAACTGGTAGAACTTGGGTCTAGGAACTTTTTCATGATGCTAAGATGCAGCTTTT GTTTATTTTTTTAGGTGCAAGATGCTAAGTTTGTGTTTGAGGCAAAGACTATTCTGAAAATGGAGCTTCTGGTTCTGTCC ACACTCAAATGGAAGATGTATCCTGTGACTCCACTTTCATTTCTGGATCACATTATCAAAAGGCTTGGATTGAAAACCCA CCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGGTAAAAACTTCAACTTTTTGAGAT TTATAGCATTCTTAAATATTAAAACTTTAACTTTTTCGATCTGTTCAAAGAATCAACATAGACAAGGTCTTGATTTTGTT ACCATTTGCTATGTGTGTTTTTGTTGAGCCTAGATTCAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACA ATGCTGCATGTTATAGACCAGATTGAGAAGAGTGATGAGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAA CAAGGTTATTAGTAATGTTTGGATGTTCATGTGTTTGTTTAAGGAATATTTGTTTATTTTAGCACATTATTTGATTTAGT TAAGCATCTTAGATTAAATGTACATGAGTAGCATATCATTTGATTTAGCTAAGCAACTTAGATTAAATGCACATCATTAG CATATCATTTGATCTTAGTTAAGCATCTTAGATTAAACAATCACAAATTAAATGCAGATGATTATTAGCACATGATTTGA TTTGATCTTAATTAGTTAGTCCTCTGCATTTTGACAGGGGAAAGTAGATGAATGCTATGATGCCATGCTTGAGCTTACTA ATGCCAATGATTATGATGATAACAAGAAGGTTAATAAGCGCAAGGTAGAGGAAATAATCCCTGGTAGCCCAAGTGGCGTC ATTGATGCTGCTTTTAACTCTGATGGTTCCAACGATTCGTGGACAGTGGGGTCATCATTGTTTTCATGTGCCCAAGGAAA AACATGCCGCTACCACCACCCCTGCCGCTGAAGGTGGTGGTGTGACGACGGCGTTTGCGTCAAATTGCTTTGAGGAAGGG GTGCTTTGATGGAGCGGCGGAATGAGAGGGAAAGCTCGCAAAGTTGGTTCTTTTCAGCCGTTTTTCTTCAATGTTCTGTA GCTGATTCTCTGTTCTTTCACAGGTTACAATTAGTTCTTACAATGTTTCATTCTAATTAAGATTGTGCACACAACATGTT CGATAGTTTGCTTTGCTGAAATTCAATTTGTCAACTGTGTTTTTTGTTTCCTTTCAGGGATCAGGAGATGAGGAGATGTC AAAGTTGCTTCATTCTCAGAAAAAGAAAATTAGACAAACAAAGAAAGACAGAAGTAAGAGCTAAGACTATATTGTACTAA TTTCTATAGCTTCGTTTGAACTTGGTGCATGAAGGGTACTCATTCAGCCTATTGTTTTATTTTGTTTCACAAATTCAGTT GTATACTAAATGTGTTTCAATTTATCATATAGCAGTATTGATTTCATTAAAGGTCTGATTTGTTTTCCTGTTTATGCCAA CATATTGGTCTTTTTTGTTTTATTTTTCAAATCTTGCATTAACATAATATTTTATCTGATTTGTTTTCAGATCTTCTTTT TCTTCATGTTCAGTCTCTTGAACAATAATTTATTACATTTACAAAGTTGCTCATTGAATTTTCATGCATCTTTATTTTTC CTTTTTACAAGAATCACTTATGCCAGTCAATCTTTTGGACCTGCAGATCTGATTCTTGCTTTGTCCTGGAAATGAGTCCG AGAGGTTCTTTTCATGAATCAACTTTGGCTTCCAGTGACGTGGAATTTCATAGTCCAACATTAAAAAATATCATGGAAAC TAACAATGAAGTATTTCAAGAATCAAAACAGTGGGAGCAAGAAAGTAGATGTATCTCACAAAAACAAATGGAGTCTCTTG CTGGTGTTATGGATGAGGAGGTGATTGGCATCATAACAATGGAGGATGTTATGGAGGAACTATTACAGGTTATCATTGTG TTTTGTGCTATAGCTACAATTTTCTTAATTAAAAAAGTAAATGTTGATAATCTGATAATACTTCATTCCCACTCTTGACT ATGGGATATGGGAGATATTCTTCTTTCTTTTGTTCACAATGCACTTTGTTCCGTTTAGGAAGAAAAAGTAAAAAGAAAGT GGGTTAAGATGACTTCTATTGAAAATTTGTTCTCATGGTAGTCATAAATGTTCACATACTGCCTACTGCCACAAAGCTTT TAAAGGAGTTCATAAAAAGACTGTCACATGAGACAAATCTATCTATAACTAACTAAAGCTAGAGGGTTTTGGGTACTGTT CATAAGAGGAAACCCGCAAGAGCCGGATCAAGGGTCGGGTCTTGGAGCGGTTTTTCCGATACCTATGCAGGAGGTCCGAA AACGGAAAACGGTAGCTGCAACGTACGGAGTATCTTCCCTGCAGATTGCAAATCTGTTGCAATCTTCCCCTCTTCCCCAT TTGCCCCCCTTTCTCATCTTCTTTCTTTGTCAAATGCTTACCATGGCAGCTATAAAAACCATTGGCACCAGCCGAAGATA TCCGCAGGTACAATTGCTGGATTCTCTTTCCAATTCCTCAAGATTTTGTACCCTAATTTACAATTGAGGAATGGGTGCTT TTGAAGGAGCGGCTGAGGGAGAAGAGGAATGAGAAGCATTGTTGAGAGAGGAGGTGGGTCTGTGGTGTGGTTGTTGTCGC GGAGGTCCTTGAACTCTGCCACTCCATCGTCGTTACCGTCCCTATCTCTCTCTGTATGGAGGATGATGAAATGAGTGGCG GAATTTCCCTTTCGTTGTTTGCAACAACAGAAAGACATGAGGCCCAACATGGATGAGGCGTGGAAATCTTGTGACAGATG AAATTGTGCTGCTGAAGAAGGTTCCTTCACCAGTAAAGCTGTTTTGGGGATCTTATTGCAGCCCTTCATGATCTGGTATA ACAATTGCGATTTTTATTTTTTGTATGTGTGTTGTATTTTGATCTATTCCTTCACCGTCGCTGTCTCTCTCTGTATGTGT GTTGTATTTTGAAATCTCTAATCAAGTTTCTATGATGTATATAAGTATTTTACATCATTCAAGTTATTACTGCTAATTCT TCTTCATTTGTGTCTTTCCCAGATATTGTTTATAAAATGCTAGACTCATCCTATTTTTTATGGAATCTAAATATGTTGGA TTTTACTTTGAACTTTCTTTGATATACCTTTTGGTTTATGCTAGACTCATCCTCATTTTTTATTCCCTCTGGACAATTAT TTTATGAACTGTGGATGTTCAAAGTTGGGATTTGTACAATGCTATATTTCCCTGTTGTTATTCATTGTTGTTCAGTGTTG CAGCAATGATGAATGTTGTAACATTGGAGGATCACCTTGAAACTTTATTCAATGAGCTACACTGCTACACTTATGTGTCT TGGTGAACTAGGAATATATGATGTGTTGTTTCCACTTTTTTACTTATGCATTGTGGCTTTCAAAGTCTCCTTCAATGTGT CCTTTTGATTCTCATAATTTGCTTTTGGTGCCTCTCTGTTTTTAGGTTCTTGAAGGATCATCCAGAGTTCCTCTTTCACG ATTCTCATTACAATACCAAAGTGAATAGCTGTATGAAATGGATATTTTAAATACGAATAGTATTGAATTTTCGTCACCTC TCTGGCAGGTACAATAAACTATGCAACTTTAAGACGAGATGAAACATTTGTTGTGGATCCTCCAATTACCCCCTGAATTT TGAAATGAATGCTTGACTGAGATCTATGTTTTGAGAGCTCCCAATCACAACACCACTTGAATGAGTTGTCTGTGTAAGAC ATTTTAATGTGTATTTGACTAAACTTTGCCATATGATATATCCTGATTTTTTTAAATGATGGGTTTTGAATCATTTCTTT CTTGATGGAATTTGATTATTTATAAAGTGTTAAAGAGTTTAGTCCATACACTCACTTTCCTTGAAAAGTGTTTTGCACTA CCAAGAATGTTGCCTCAAGTTTTTATCATGTGCTTCTTTTTCAGATAGTTGACTGGTTTTCTGAACAAGGATGGTGTTTT TGTTTCAGTTAGCTAACTAACTTAGGACCATGAATGCTGGTGAGTGTCCTTATAACACTGAGACATTTTTTCTGGAGAGA TTTTTGCAGGTAAAAGGATTTGGATATTTATTTCTGTGTGATTTATTAGCAGTTATGGTGTTTCTGGTTAGAGCAAAATG CTTGGACATTTAAAGGGAATATGCTGACCTTAGACCTGCTATGGACATATAGTTTTGTGGGATCTTTTTAGTGCCCAAAA TAAGGAAATTCCAGTGTATCTTATCATGTAATGTATATATCAAAGACAACCTATGTACTCAGTTGTATGTCCTGACCATG GCTTATTACTGTATGTGTAGTCTTCCATGTCTTGAGACCGTAATTTAAATATTTAGGATGCACTTAGGGCTTTATGGAAT GCTGCATTTCCTGAAGAAAAACTCCATGGCTTGATATCCGACCAGTGGAAGGAAATGGGTTGGCAAGGCAAGGATCCGTC AACAGATTTTAGGTAGATATTGTCCTCCTGGTTTTTCACTGCCAAATCTTTTCTTCATTCTTGCTAATTGCTTCTAATGA TTTCTATTTGGATATATTTGGCAGGGGTGGTGGTTTTATATCATTGGAGAACTTTCTGTTCTTTTCTAGGAATTTCCCGG TACGATTTGTTCATTGGTTAGTTTACTCCTATCTGACATAGTTTAAAATGAACAGCTTTATACTATGTATGGCAGCTCGT GACTGGAGAAAGCAAATAGGCAATTGTATTAGTTTTCTTCCCAAATAAGGGGTCATTTAGATTCTAATATTAAAAGGACT TCTATAGATGGAGATGGGGATGGATCCTCTTATGTGAGATTTTCACTGGACACCTCGCCCCCTTATGCACAATTCAAATT TGTCACCCTTATGCACAATTAAAGTTTTAAAACTTTGATTTTTTAAGAAAATATGTTAGGATTAAGTATGAAACCAAATT CTCCTCGATCTTTATCCTCTTTTGTATTGGTTTGTTAGAATTTTTTGTGTGCTGAATCCATTTGTGTTAATAATTGTCAT GCAAAAACACCCTTTGTTTTAGTGACTGCTAATTTATTTTTGTTCTTCTTTATTAGAATCTATATACCTACACTGTGATG TGCAAAAATCCACTTTTGTTGAACCCATCTCTATTTATGGTTCATGGTCTACAAAAATATGCTTTATGCTTATCAGAATG TTGTTTGTAAATTTTAAATATTGGTTCTCTCTTTATGAGACTAATAATTCTGGTGATTAAATCTTTTGCAGGAATTGAAG AGAAGTAGAAATTAGCATCAGCAAGAAGTAGCATGTTGAATTGAAGGAGATGGAACAAGCATCAGAAGAAGGAATTGAAG GAGGATTCGAAATTAGCATGAGCAAGAAGTAGCATGTGGAATTGAAGGAGATGGAAGTAGCATCACAAGAAGAAATTGAG CCGTTTTCGTTTGAGAGAATGGAAAAAATGAAGAAATGTGAGCCAAATATATATTTGTACTCATTTATCTTTATGTAAAA AACACAATTAATTGATCATTTTTTCCCTTATTTTGTATTAAAATCCCAATATCTGTACTTTGGAGCATTTTTTTCCAGCT CCCACAAACGGTTGCTTGATTTTAAATAAAAATGTATGCTTCATGAAATCTTACTCACAACTACTA
CDS sequence (LotjaGi2g1v0376500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTCTGGTTCTGTCCACACTCAAATGGAAGATGTATCCTGTGACTCCACTTTCATTTCTGGATCACATTATCAA AAGGCTTGGATTGAAAACCCACCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATT CAAGATTTGTTGGTGTTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAGAAGAGTGAT GAGGTGGAATACAAAAAGCAGCTTCTGGGTGTTCTCAAAATTAACAAGGGGAAAGTAGATGAATGCTATGATGCCATGCT TGAGCTTACTAATGCCAATGATTATGATGATAACAAGAAGGTTAATAAGCGCAAGGTAGAGGAAATAATCCCTGGTAGCC CAAGTGGCGTCATTGATGCTGCTTTTAACTCTGATGGTTCCAACGATTCGTGGACAGTGGGGTCATCATTGTTTTCATGT GCCCAAGGAAAAACATGCCGCTACCACCACCCCTGCCGCTGA
Protein sequence (LotjaGi2g1v0376500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLVLSTLKWKMYPVTPLSFLDHIIKRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGVLPSVLATATMLHVIDQIEKSD EVEYKKQLLGVLKINKGKVDECYDAMLELTNANDYDDNKKVNKRKVEEIIPGSPSGVIDAAFNSDGSNDSWTVGSSLFSC AQGKTCRYHHPCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 1.8E-48 | – | |
| Gene3D | 1 | 111 | 111 | 2.0E-21 | – | |
| PANTHER | 1 | 138 | 138 | 1.8E-48 | ||
| SMART | 16 | 135 | 120 | 2.8E-12 | ||
| Pfam | 16 | 123 | 108 | 7.0E-20 | ||
| SUPERFAMILY | 17 | 107 | 91 | 8.96E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0376500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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