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LotjaGi2g1v0388000.2

Overview

Field Value
Gene ID LotjaGi2g1v0388000
Transcript ID LotjaGi2g1v0388000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Inorganic pyrophosphatase, putative; TAIR: AT1G01050.1 pyrophosphorylase 1; Swiss-Prot: sp|Q93V56|IPYR1_ARATH Soluble inorganic pyrophosphatase 1; TrEMBL-Plants: tr|I3T075|I3T075_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0388000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:88419902..88423185) extracted from Lotus japonicus Gifu genome v1.2.

TAATTCTGTCAAATCTCCATCCTATACCGTCCGATAGAAATCGGACGACACACAATTAATTCAACCAGTGGTCACTGAGC CCAGCCCAGTTGATGATCAAATCCTAATACAGATACTACCCGACCTTCTCTGCTTTTCTTCACTTTTTCGCCGCTTTTGA CTCACTCTCTCTCTCTCTCTCTCTCTCTCTGTAAGTCCTTACTTTTTCATCGATTCTTCTTCTCATAATCGTTTCAATCC CCGATGATCTTGTTATACTGATATAGCACCATCTTCTTCTTTGCGTGTGATTACTAGGTATTATCACCATGTCTAAGTCT AACCATCAAGAATCAAGTGCTGCATGGAATGCCAATTACCCTCACCCTAAGCTCAATGAAAGAATTCTTTCTTCCCTTTC ACGCAGAACTGTTGCTGCTCACCCCTGGCATGACCTAGAGATTGGTGCATACATCACTTTTCCCATTTTCTTTCAATTAT AATCAATTTACCACTATTTATTTATTTAGGGGAAAACTCACAAATGATTTCATTTTACACATGCAGGACCAGGAGCTCCT TCAGTTTTCAACTGTGTAAGTTTTTTTCAGTTTTCTCAATTGGTTATTAATTAATTAACCTTATAGAAATGATTTTTTTT TCTCATGGATTATAGATATATAAGTTTTGGGCTTCTAATATTAATTTATTTCTGGAAATCCATCAAATATTTATTACTAT TTGTACTTATATGAATAGTGATGCAGCTAGAAAAGAGAGTGATTTAGATTTAACAAGGATATAATGCTAATGGGAAATTG GGAATCTCATTTTATTGCTTGAGATGTATAGTGCCTAAATTTGGCAATCTGGAACTTCAAATCTTACATTTTTGCTTGCT TGAATTGTTTCACCAAACTCTTGTTTCCCATCAATGTTTTGTTAGAGAAATAAATGGATTTTCATGGCAGGTTGTTGAAA TTAGCAAAGGTGGTAAGGTTAAGTATGAGCTGGATAAGACCAGTGGACTTATTAAGGTTCGGTTCCCTTTTCTTTACTTA AATTCGCATTCTTTCATTCCATATGCTTGATTCATTTGCTAAATATGGAGGACTTTCTTGTATACTCTCATTCACCATTT CTACAATATTCGTCATTGGGATTTTTTTGGAAGAAATTTGAAGATGAAATTTCTTGAAACAGACACGCGTTTTTTTAAGC AAATTTTCCCAAATTGTGCAAGGTCAATTTCCTTTGCAAGCATCACATCTTGAAATGTCTAGGTATTTAGGAGAAAGCTT GTTGGTGTTTAATGTTAGGCTTCGAAGTAGGAATTTGGATTTATAGATAGGTGTTGACCAAAAGATTTTATAGATAGGTA GAATCACTCAAGAATCATGATAAAGTGATAAACTCAACCCCCACAATGCAATGCAGATGATCTAGATTGTTGTAATTGTT CTCACTCAAATGTTGTTTGCGTCCTTGACATTTTGAATGGTTGACTATGATTGTTATTAGGATTTAGGATTTAATGTGAT CATTTGCTTCCTTGCTATTCTTATATTTTATAATGTTAATTTTACTAGCTTTGAATCTTTAATCGGTCTGTACCTCGGAA TTACTAATGGATGGACTGAATAACAGGTTGACCGTGTTCTTTACTCATCAGTTGTGTACCCACACAACTATGGTTTTATC CCACGAACCATCTGTGAGGACAGTGATCCGATGGACGTTCTGGTTTTGATGCAGGTAACCATGCTTAAAAACCATTGTTT GTAATATTCAACAGAAATGGTTTACAGCCAAAAATTTAACTGTATTATAAGTGAAACTTATGATTGTTTTGAGCAGGAGC CTGTGCTACCTGCCTCCTTCCTTCGAGCCCGTGCTATTGGACTAATGCCTATGATTGACCAGGTAAAAGTTGCATCCAGC TTGCCTTTGTTGTTCATTCTGTTTGGGTAAATGTGAGAACCATGTCAAAGTCTGAAAAAAAATTGCCACCTAGGAACCTA GTAAGCATTTCTAATGATCGAGTGTTTGTATCTCTGACAGTGAATTTGAACATTAAGTCTAAGTGGTTGTCCTAATAACT AAAATGATAAAAACATTTCCATATCTTGTATATGATATGACGTGGTGAAATCTATCACCATTAACCTTTCATACCATAGT CCAATTTCAACTTTGGGGGAGTAGGGTTCATTTTTTTGGAGCAACAAAGTAAAATTGATAGATCCAAGGAAAACTATTCA AGGTATCCCACAGCACCATTGGAGTGATCTGACTGTAACTGTTGTTCCCTTTATACCTCTTTTGGCTTTCAGGGTTGTAC ATTTTGAATCATTTTACCCCATTAAAAGAAGATATTTGAAGAAAATGATATTTATAATTATGAATTCTGGTGTAGGGTGA GAAGGATGACAAGATCATTGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACGGACATCAAGGAACTTCCTCCAC ATCGACTAGCTGAGATCAGAAGATTCTTTGAGGACTGTATCCTTTTATTTGCATTTAATTAGTACATAAGCATATATGCA TGTCAGTACATAGTCATTAACAATTAGACCCATTGATCAGTAGTTTTCTGGGGGTCAAAGAATTAAATTGCTCCCAATAC CAAATTCCCTGGTTTGCTTCATTATCCTTAGCTTGCCATACTAGACAAGAAGAATGAGAACAAAAAAGTTGATGTGGAAG ACTTTCTACCAGCTGAAGCTGCCGTTGAGGCCATCAAGTACTCCATGTGAGCTATCTTCCTTTACTATGATCTCCCATCT TATTCAAATTCTGTGTCTAGTCTTGGATTCTTGGCACTAATCTTGAATGATTTTAATTTTCCCTTTTGCAGGGACCTGTA TGCTGCTTACATTGTTGAGAGCTTAAGGCAGTGACTTCTCAAAACTGAATTGCAGTTGCAGTGACCTCTAAAGTATTATG CAAATGTGGATAAAACCCCATAGACATTCTGATTTCTGTGTCAGTGTTGCGGCACTTATGCAACCATCGCTGTTTAACTC TTTTAATTTGAGGTTGCGGTTGTGTACTGCTACAACTCATATCTAGTACCGAAAGTCTGAAACCCTTATAATTACGAAAA GCAAGAAACAGGTGGTTGTTATTGTTATTACTATAGGTTCAACTGCCAAGTGTCTTTATTGTTTATGTGTCCACGGTGAT AACACTCAATCACTAATGTTTTTCATACACCTTTTTCAACTCAACCTAGGGTGTGGGAAAGAAATAAAAGATCTTCAATG ATAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0388000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTAAGTCTAACCATCAAGAATCAAGTGCTGCATGGAATGCCAATTACCCTCACCCTAAGCTCAATGAAAGAATTCT TTCTTCCCTTTCACGCAGAACTGTTGCTGCTCACCCCTGGCATGACCTAGAGATTGGACCAGGAGCTCCTTCAGTTTTCA ACTGTGTTGTTGAAATTAGCAAAGGTGGTAAGGTTAAGTATGAGCTGGATAAGACCAGTGGACTTATTAAGGTTGACCGT GTTCTTTACTCATCAGTTGTGTACCCACACAACTATGGTTTTATCCCACGAACCATCTGTGAGGACAGTGATCCGATGGA CGTTCTGGTTTTGATGCAGGAGCCTGTGCTACCTGCCTCCTTCCTTCGAGCCCGTGCTATTGGACTAATGCCTATGATTG ACCAGGGTGAGAAGGATGACAAGATCATTGCAGTTTGTGCTGATGACCCTGAGTTCCGCCATTACACGGACATCAAGGAA CTTCCTCCACATCGACTAGCTGAGATCAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAAAAGTTGATGTGGA AGACTTTCTACCAGCTGAAGCTGCCGTTGAGGCCATCAAGTACTCCATGGACCTGTATGCTGCTTACATTGTTGAGAGCT TAAGGCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0388000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSKSNHQESSAAWNANYPHPKLNERILSSLSRRTVAAHPWHDLEIGPGAPSVFNCVVEISKGGKVKYELDKTSGLIKVDR VLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPASFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYTDIKE LPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAVEAIKYSMDLYAAYIVESLRQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10286:SF56
4 216 213 4.9E-137 –
PANTHER
PTHR10286
4 216 213 4.9E-137
IPR008162
SUPERFAMILY
SSF50324
33 211 179 1.7E-66
IPR036649
Gene3D
G3DSA:3.90.80.10
37 216 180 1.7E-75
IPR036649
Hamap
MF_00209
51 207 157 31.161
IPR008162
CDD
cd00412
52 204 153 3.50085E-86
IPR008162
Pfam
PF00719
55 206 152 3.2E-51
IPR008162
ProSitePatterns
PS00387
102 108 7 -
IPR008162

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0004427
Molecular function Inorganic diphosphatase activity Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006796
Biological process Phosphate-containing compound metabolic process The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0388000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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