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LotjaGi2g1v0388500.3

Overview

Field Value
Gene ID LotjaGi2g1v0388500
Transcript ID LotjaGi2g1v0388500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Phosphopantetheine adenylyltransferase; TAIR: AT2G18250.1 4-phosphopantetheine adenylyltransferase; Swiss-Prot: sp|Q9ZPV8|COAD_ARATH Phosphopantetheine adenylyltransferase; TrEMBL-Plants: tr|G7KEY2|G7KEY2_MEDTR Phosphopantetheine adenylyltransferase; Found in the gene: LotjaGi2g1v0388500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:88483934..88484733) extracted from Lotus japonicus Gifu genome v1.2.

TCTATTGCATATAATGTTTCTTCTAGCAGGATTTATATGAAGGAAAACCCTTATTTTTCTTTTCCTACCTTACATGCAGT CTATCAAGCCAGATTTGGAAGTGCAAGCTGTACCAATCACAGATCCGTATGGCCCTTCCATTGTAGATGAAAATTTGGAG GCTGTGATTGTAAGGTTTGTAGTAAGGCCATCTTTGTGTTTGGTGTGAAGTGTCTATTAGATTTTATATATCTGTAGAAG CTTTAAGAAAGGAACTTGTGAGTTGTGTCTTGTGACAAAGTATTTTGTTCCTATTGGCTATTTTTCTGATCTTGATGTTC ATGGTTATAACTGTAGTCTTGCTTTAATGGCAAACTGATTGCAGTATAGACCAAATGTCACAGAACTTTATATATGTTAA GACTTTTAAAGTGTAGATTATTTGATGTACATGTACTAACTGGAGTTGTTTCTCTTACAGCAAAGAGACATTACCGGGTG GATTGGCAGTAAACAGAAAAAGAGTTGAAAAAGGTCTTTCACAGTTGAAGGTCTCAATTTATTTTTTATGTCATTTGGTT ATATTTTCCGTGTAAAATATGTAAGAAAATATATTTCTACTCATGAAAACATTTTTGTTTCACATATTAGAAATTGTTTT CGTGGATCTTATGCATTTTTTTGGTGCAATGGATCATATGCAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTG GAACTAAGCTGAGTTCATCAATGTTGCGAAAACTTGAGGCTGAAAAGGCCCAAAAACCAAGCACGATATCACAGTCATAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0388500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGTCTATCAAGCCAGATTTGGAAGTGCAAGCTGTACCAATCACAGATCCGTATGGCCCTTCCATTGTAGATGAAAA TTTGGAGGCTGTGATTGTAAGCAAAGAGACATTACCGGGTGGATTGGCAGTAAACAGAAAAAGAGTTGAAAAAGGTCTTT CACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGGAACTAAGCTGAGTTCATCAATGTTGCGAAAA CTTGAGGCTGAAAAGGCCCAAAAACCAAGCACGATATCACAGTCATAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0388500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSIKPDLEVQAVPITDPYGPSIVDENLEAVIVSKETLPGGLAVNRKRVEKGLSQLKIEVVDLVSGESGGTKLSSSMLRK LEAEKAQKPSTISQS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.620
1 88 88 4.8E-20
IPR014729
PANTHER
PTHR10695
2 90 89 5.3E-44 –
PANTHER
PTHR10695:SF44
2 90 89 5.3E-44 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0388500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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