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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0392900 |
| Transcript ID | LotjaGi2g1v0392900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT4G36730.1 G-box binding factor 1; Swiss-Prot: sp|P42774|GBF1_ARATH G-box-binding factor 1; TrEMBL-Plants: tr|I1LHN8|I1LHN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0392900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89014254..89018446) extracted from Lotus japonicus Gifu genome v1.2.
AACTTGAATTGAATGTTGAATGAACCAAAACCAACGTTATCTCGTGTTTGTTAGTATTTTCAGTCACGCTCTCTCTGTTT TCTTGTTTCAATTCACATTGTTTGGTCTTTGTTTGTTATTGTTAGTTTGTTACTGTACCGTACAAAACAGAAACCTCAAC AACAAAACAAAATTAAATTAAAATCATCCATCATTCATTCCAGTTGGACTTCCACATCACCGTTTTTTCACTCCTCTCTT TCCGCCATCGATACATACAGGTCACACTCTCCCCTGAATTTTTTCTTTCTTTCTTTCTTCCTGTGAATTATGATAGTGAT ACTGCTTGTGCTTTGCTTAGTTTTCTTCTTCTGTAGCTTCAGAATCTCATTGAATTTTGCTTTTGCTTAATTTTGATTCG GATGAAACTCGCTTTGCTCCGAATTCTGCTTGCCCTCTCTCGAATTCCAATTTTTCAATTACGTATATTGCAGCTATAGT ATCAATTCACCACCTCGTCTTTGACCTAATTTCGCTTAGTTTATTGATAAGTTTACACAACATAAATGAGGATTTCACAT TACATTAAATTCAACCTAAAAAAATTAATGTCACCACTCACCAACACAATCTTTCCATTACTCTCAATTTGTTGTATGAA GCAATTAGAAGCTGTATAATAACGTCAATTTGTTATATGAAGCAATTAGAAGCTGTATAATAACGTCATCTCAATCTGGA AAGTATAAGTTGTGCGTTTGGATTTCATTGAACTCGACGTGGATCCACGTTGAAGGCAACTGTCAAAATCCCACTTCTCT TATCCACGTTAAACTCAAAATCACAAATTCTAGCTTATTCGTTAGTGTGTTGAGATACGTAAAATAACATCGGCGTTGAC TTAAGGCCAAACCAAACATGCACTAATTTTCATCTTTTTAATTTAGTGAAATTAGTTGAACTTTAATTTAAACTTGAATT CTCAGATTTGGTCATATCATAATGATTTGAGATTGTTGCTTGGGTGTTATCTAGAGGAAAGAACCAGTTAGTTAATGGGA TAGAGCAATATTCAGATCTCATCAAGAGCAGGGTCAGCTTACCACGCTCCTTGAAATAGAATGATCAAAATAATATTTTA AACTCATTTACTCCATCCTTTTGATTATACTTGAGAGTTGCTAATAGTTAAATTGAGTGTTAGTTATTAGTGACTTTATA TTTTTTTTATTCAGAGTATGGTCTCTCACATGTGTATTTGTTCAAGGTGATATAAACAGTTATCAGAACTTGATCTGATT AGAAGTATTTTCAGCTGGTGGCACTGAAAGGGCAGTTATTCTGTGGTTAGCTGCATGGGAATTGGAGAAGAAAGCATGGA TAAACCTTCCAAACCATCTTCAACTTCTTCGACTCAGGTTCTTTCTTTACTAGTTCTCTCCATTTGTTTATTCTTCTAGC CCTTTTTCCTACGTCCTTATCATTTATGTTCAATATCAACTGCAGATATCTCCGACGCCTTCATATCCAGACTGGTCCAG CTCCATGCAGGTTGGGGGAAAATATGATTTGGACATTTTAATCAGGCTTTTGTATTTGTGAAGTCTCTTCAAATTATAAT TTTTTTTAGAACCTAACATGTCAGCTCTTAATTTAGGCTTATTATGCTCCTGGAGTCACTCCACCTCCTTTTTATGCCTC AACTGTTGCTTCCCCAGCTATCCATCCCTATATATGGGGAGGCCAGGTAAATATTATATTATATTTCATTGGTAATATAT GTTTGCATGCTATATGGCAGAGAAAGTTCTCATTTGCAGTTTTCATTTTTATTTTCAGCATCCCCTGATTCCACCATATG GTACTCCTGTTCCTTATCCAGCTATGTATCCTCCTGGGGCTGTCTATGCTCATCCTAGCATGACAACGGTATCCCATCCA TTTTCCCTCAACCTCTCTGAAGAAAAATGTGAATTCTGTGTATTATTTCCTTATACAAGATGAATTCACATGTTGCTAGG CAACTTTATTTGCTAGGTCTGTTATAGTTTTTGGCAATTCAGTGATAATCTTTGTTATTTATTCTTTTTGGCTTTTCAAT TGTTTTGGTAGACTCTAAGCACTCCACAGAATGTTATGGAAGGCAAGAGACCTGATAGAAAAGATCAGGCTTCTGCGAAA AGTTCAAAGAAAATGTCTGCGAATACTGGTTCCAAAGCAAGAGACAATGGAAAAGCAAGCTCAGGGTCAGGAAATGATGG CATCTCACAAAGGTTTGGCAAGCCGTTGGTCAATTTTAGATCTTCTCGAGAGTTCGTTCTTCTCTGTTTGCATCCTTTAT ATCAATATTTTGACAAAATTTCATTAACAGTGCTGAAAGTGGTTCGGAGGGATCATCAGATGCTAGTGATGAGCAAACTA ACCAACAGGTATATTACTCTTTAGCATCAGTACTTGTGGTCTCACTTGTTTACAGTATATTGCTAAATAATAAAATGATT CCTGAAGTGAAATCTAATCTAATAGGCTCGTTCATATTTTCCACTTAGCTGTCAATGTTGCTTAAATATTTTCAGCAAGT CTCTAATGAATTGGTTTTACTGAAAGCATTTTGACCTCTTTTCCTTTCCTTTCTGTTTCCTGAAATCTCATTCTAATGAA TTGCCTGTCTTCGTAGGAATCGGCTACAAACAAGAAAGGTAGCTTCAACCAAATGCTTGTTGAAGGTATGACTCATTCTT CTTTCTGATTATCTTTCTTCTACATGGTTTCTCAAACACTTTTGTAATTGTTTGCACCTTTTCAGGAGCCAGCGCACAGA ACAATTCTGTCTCTGTTGGGGTCATTTCTCAATCAGCTGTACCAGGAAAGCCTGTTGCATCAATGTCTGCAACTAATCTT AATACTGGAGTGGAGTTTTGGAATGCATCGGTAGATGCTACTCCTCCAACCATAATGGGACCTGATGCCACACTTGGTGA ACCATGGAGACAAGTATGATTCTTGCTTTAGTTTTCTAAAAAATTGTCTTGGCACATGTTACTTTTTATTTTGCATAGTT AACATCTAATTAATTTTATGCTTATTCTAATTGACCTGAAGTGTTTTTGTTGATACCCTGAACTTCCCATAGATAGAAGT CCATTATGAAGTTGCGACTTTGCATTCTTTTAGTTCCTTTACCTGACAGAGCTTTACTTTCCCTTTCTCTTCCCTTATTC TTTTCTGGAGGACGAGCGTGAGGTGAAAAGACAGAAGAGGAAACTGTCTAATAGAGAGTCAGCTAGGAGGTCAAGACTAC GCAAGCAGGTGCTTTGAAATTTCTACTTCATGGTTCATGCTCCCTTTTTTAATTGTGAAGCTAAGGGCGGTGTCCAGGTG GCATGTCACCAGAGAGAGATCTCAGCCATCCAAAATATTTTTTTCTAATATATTTTGGAATTTGGATGGTTGAGATCTCT CAAGTGGTCATGTCACAGGAGAAAATCCAAACCGGGAATGCCCCTTCTTGTTTGATATTTGAAGGCTGGAAAGCTATCAT GCATTTTACAACTTTGTTTGACATCCAATGCTACCATTTTACAAGTTTTGCTTTTCGTGTTCCAATCAGGCTGAGTGTGA AGAATTACAAAAGAGGGTAGAGTCGCTGGGGAATGAGAATCAAACTTTGAGAGAAGAGCTTCAGAGAGTATCTGAAGAGT GCATGAAGCTTACATCTGAAAATAACTCTATCAAGGTAAACTGCCCGTTTTTCCTCCACAGGTATTATTAGCGCTGTATT TTGCAATGCATCATCTGATCTTCATAAATAAAAAATGCATCATCTGACTCTAGTTACTGGGTACAGGAAGAGTTGAATCT GTTGTGTGGACCTGAAGCAGTTGCTAACCTTGAATAAATCACCTTTCTATCACTATGCTAACGGCAACTGCTGAAATTGA TGAAACTGATCAAGGATCGAGTTGACAGCTGCGATTTTATCAATTGCCTAATAGAGAATAGGATTTTTTTAATTACTAAT TGATAGCATTAACCCATCAATTGTAATTCCGCCCATGTTTAAATTGACAATTTTAGGCTAATGTTTTAACATCACACTTC TGCTCAGAATTTATTTGCAATTGATGTTAAGATGCTGCAACTTTCAAACTCCCTGTAAGCTGGAACCGCGATTTTATTTT ACTGTATTAACATGTGAGCTCATTGAAGGCACA
CDS sequence (LotjaGi2g1v0392900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTGGAGAAGAAAGCATGGATAAACCTTCCAAACCATCTTCAACTTCTTCGACTCAGATATCTCCGACGCCTTC ATATCCAGACTGGTCCAGCTCCATGCAGGCTTATTATGCTCCTGGAGTCACTCCACCTCCTTTTTATGCCTCAACTGTTG CTTCCCCAGCTATCCATCCCTATATATGGGGAGGCCAGCATCCCCTGATTCCACCATATGGTACTCCTGTTCCTTATCCA GCTATGTATCCTCCTGGGGCTGTCTATGCTCATCCTAGCATGACAACGACTCTAAGCACTCCACAGAATGTTATGGAAGG CAAGAGACCTGATAGAAAAGATCAGGCTTCTGCGAAAAGTTCAAAGAAAATGTCTGCGAATACTGGTTCCAAAGCAAGAG ACAATGGAAAAGCAAGCTCAGGGTCAGGAAATGATGGCATCTCACAAAGTGCTGAAAGTGGTTCGGAGGGATCATCAGAT GCTAGTGATGAGCAAACTAACCAACAGGAATCGGCTACAAACAAGAAAGGTAGCTTCAACCAAATGCTTGTTGAAGGAGC CAGCGCACAGAACAATTCTGTCTCTGTTGGGGTCATTTCTCAATCAGCTGTACCAGGAAAGCCTGTTGCATCAATGTCTG CAACTAATCTTAATACTGGAGTGGAGTTTTGGAATGCATCGGTAGATGCTACTCCTCCAACCATAATGGGACCTGATGCC ACACTTGGTGAACCATGGAGACAAGACGAGCGTGAGGTGAAAAGACAGAAGAGGAAACTGTCTAATAGAGAGTCAGCTAG GAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAATTACAAAAGAGGGTAGAGTCGCTGGGGAATGAGAATCAAACTT TGAGAGAAGAGCTTCAGAGAGTATCTGAAGAGTGCATGAAGCTTACATCTGAAAATAACTCTATCAAGGAAGAGTTGAAT CTGTTGTGTGGACCTGAAGCAGTTGCTAACCTTGAATAA
Protein sequence (LotjaGi2g1v0392900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIGEESMDKPSKPSSTSSTQISPTPSYPDWSSSMQAYYAPGVTPPPFYASTVASPAIHPYIWGGQHPLIPPYGTPVPYP AMYPPGAVYAHPSMTTTLSTPQNVMEGKRPDRKDQASAKSSKKMSANTGSKARDNGKASSGSGNDGISQSAESGSEGSSD ASDEQTNQQESATNKKGSFNQMLVEGASAQNNSVSVGVISQSAVPGKPVASMSATNLNTGVEFWNASVDATPPTIMGPDA TLGEPWRQDEREVKRQKRKLSNRESARRSRLRKQAECEELQKRVESLGNENQTLREELQRVSEECMKLTSENNSIKEELN LLCGPEAVANLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 330 | 330 | 3.9E-126 | – | |
| PANTHER | 1 | 330 | 330 | 3.9E-126 | – | |
| Pfam | 5 | 94 | 90 | 7.2E-30 | ||
| MobiDBLite | 10 | 29 | 20 | - | – | |
| MobiDBLite | 97 | 184 | 88 | - | – | |
| MobiDBLite | 120 | 184 | 65 | - | – | |
| MobiDBLite | 236 | 274 | 39 | - | – | |
| MobiDBLite | 244 | 259 | 16 | - | – | |
| Pfam | 250 | 312 | 63 | 8.0E-20 | ||
| SMART | 250 | 314 | 65 | 6.9E-22 | ||
| ProSiteProfiles | 252 | 315 | 64 | 12.932 | ||
| SUPERFAMILY | 253 | 309 | 57 | 1.04E-11 | – | |
| Gene3D | 254 | 307 | 54 | 5.2E-14 | – | |
| CDD | 255 | 306 | 52 | 3.2378E-24 | – | |
| ProSitePatterns | 257 | 272 | 16 | - | ||
| Coils | 263 | 318 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0392900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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