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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398700 |
| Transcript ID | LotjaGi2g1v0398700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tubulin beta-1 chain; TAIR: AT4G37190.1 plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein; Swiss-Prot: sp|Q9BUK6|MSTO1_HUMAN Protein misato homolog 1; TrEMBL-Plants: tr|I1J946|I1J946_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0398700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89576797..89583752) extracted from Lotus japonicus Gifu genome v1.2.
ATACACTAAAACAAACGCAGCCTAAAAGTGAACCAGAAAGAAACATGGTACATATTTCGCCTCTAACCTGAGAAGTCAGA ACGCCTCCTCTGCTTCTTCCCTCTCTCGACGGTGACCGCCGCTCATCATACCGCCGTCAGTAGCCACCCCCTCACTGGTA TGAGGCCCCAATTTCTTACTCTCTTGCTCTGTTCTTGAGGCCCCTATTTGCTATTTCAGTGTTTTTGTTTCTCACATGTG TATTGAATTGGCAGCTTGCATACGAGTTTGCTTCTTCCTCTGAATCAAGTGCTTGTGCTGTTCGAGACTTCGAGTGCTTG TGCCCTGTGTTGTTCTTTCGGTAATTTTCTTTGCTTATTCATTCTTTAGTCACATGCTATCTACATAGAACCTATGTTTC TGTGCTTGTTCAGAGCTTTTGCAACTTAGAGGCTTGCTGTTTGAGTGCTTGTGCTGTCCACTCCCTTGCTTATCAAATAT AGTTTCTATGTTAAAAAAACTGGCCTAGTCTTTGTGTTGTCCATAGTCCATACCCAATTATTTATATGGTTTCAGCTTGC TTCTTACCTTGATTGGCTTATGAATGACCCATGGTAGTAAATTATAACCACATATTTAATACCAAATAGAAAAAAGTCTG CATATGTTTGATGTTTTGCTAATTTTGATGGTTAGGTTGATTTATCAAAGATGTCTTCCCAATCTATCCTTTAGTTTTTT TGTTGGGATGTTGAACAATATTATGTTTCTTGAATGCTATTTAAATGTGTGTTCTTTGCCTATCTTTTATATAATTTAGC AGAAAGTTTATACATGTATGAATGGTTTTATCTCCAACAACATATACTAACCTACCCGTACCTAGGATTTTATAAAAATC TCGTATCCGTTCCCAGTGCCAGTACCAGTACAAGTACCGTACCCATATATATAATCCTAGATGTTATGTTTCTGAAGCAA TAACTCGTTTTCTTTATTTCTCTAAAGCAATTGATGCGATTCTGCAGCTGATACGAAGCGAATATGAAAGAAATAGTAAC TCTCCAAATTGGTGATTTTGCCAATTTCATTGGCTCTCACTTCTGGAACTTTCAGGTTTCAATATTTTTATCCTCAAAGT TTTTGTCTTTCTGATTAGCTTTAACTGAAATAACTTTTGAACATTTTCCTTCTTTAATATTCCATCTGTGTTCAATTGTA AGGATGAGTTGCTTGGATTGGCTGGGGACCCTAATGCTGATTCAGTCTTCAAGAGTCCGGATCTTAACATGGATGTGCTT TATCGTAGTGGTGAGACACAGGTGCTGCAATTATCTCTAGTTGAATTAGCATTCTAGGATTATAATGCAATTTTTTAAAA TCATCTTGTATGTCACTAGAAAATATGAGCTGGTTTTGTTCTGTTAACTATTAACTAATACATTTATGTCTATTGGTAAA TTTTGTGAGTGGCTGGGGAAAATGGGGATAGATAATCTGAACCTGTAGATTAGAAGCATTTGCTGTTCTACTTACGTTTT CCTCGAATATGTGCAGGGCATCAATACATATACTCCTCGCCTAGTTTCAATAAACTTGAGAGGTATTCAATTTCAATATA TGTATTTTTAAATTATTGAAGAAACATATCAATGCTGTTCTTGCACTGTTCATTGGGTCTATTTGTCGGTATTGCTGTTT ATTACGTAGATCCCACTATGTGGTTGTGAAGGATTCATGGTTAGTCTTACATTCAACTGAATTGGAATACTGACTTTAAA AAAATGCACCAACATATGTAGGGCCTACTTAATTGGAAGGTTCGTTGGTAATGGTTTAGATATTGTGACTCCAAGCAACT GAGTTTTTTCTTCTTCTTTTTTTTAGGATATAGAAATCAGATGAGCATGTTAAATTGATAAGGAAAATTGTAAACAATAG CAGACAAGATGACTCACTTACTTTGTACATGGAATCTGAGGAAGAGCAAGATATTCATCATAAAACTTGTGAAGCCTGAT ACAATGCCAAAAGCAGAAGGAAACTTAATTTTGTTGCGAACAATTATTTACCATGCTTATTTAATAAGGAAAACCTTGAA TTTTTTTAATAAAGAATACAAATTGCCTATTGTATGTATGTTGGTAGTAAATATTAAATAATTTTTTACATTTTTAAATT TTCACTGGGGAAAATTCTTTTGATGTGATCCCACATATTTAAACATTTTATGCAACATTGCTAGCATTTCTTGCCCCTAA GGAGCTGAAGAAAGCACAATATCATGCCTGTATAGTGTTTACTTCTTGGATATCAGTTTTATCTCAGTCAACATCCTGTT GATCTCAGGAATGCTTGTGTCAGTGAGAACTTATTTTAGCGTTAGATTAGTTGTATAATTTATTATCCATTTTCGTTCCT GGTGTAAACATCCTTCTCTCCCATTCCCCTTGTAACTATTTTTAGGATTTGTTAACCTTTCCAGGATCCCTTGGATCTAT GAGCTCACGTGGTACGTTGTATAAGGAGGTTTCTCCCACAACATGTGTGACCTGGTAAGTGTTTTTACTCTGCTTTTACA ATGATGGTTCACAGGTTTGAATGATGAATAGTACTGAAGAGAACAAAAATGGTAGAGGATTGAAGAAGGCATGTGACATG GACATTGTTAGGGATGTTGATTTTTGTTGTGTCAAATCTTAATATTAGCTTTTAGCAAAATGACAGTGGATCCATTTTGC TTCTTTTGCAAATATTAGTAATATTGAGGCATCTTATAAGGCCAGTCTTGAATAACACTGATATACAAAATACCGGAAAA CTGTAATAGATGAGGCAGATGTTTACCACAGAACTGCAAAATAAATTCCATATTTATAAGTGTGAATGAAAATTAACAGT GGTAAATTTATACTTGAAAATATTCTGATGATCTGTATTTCTGTATCTTTTTTGTTTGTCAAGCTTCGACTTTAAGCCTT CTCAGTTATTGAAAAGTTGACATTGTTTTAACCATCTTTTTTTATTGGACATAACCCTACATTAGCTGTTATATCTATCA ATTTCCCTTGGTTTAAAATTATGTTAAAATGCACTTGATGCCCATAGAACTATGTGCAGGACAGGTAGAGTTTCCACCGA ATCCTCTCAGACTCACAAAAGAAATTTATTTCTACAAAGACTTAATGAAGAAGAGGAAAATATGAGTTTGGCAAATGAGA TTAGTGGTACAGACAATGGTTCTCAGAGTGAGTATCAGGATAATGATATAGTTGAATGTCTAGAAAATGGTGTTAAGTTT TGGACTGACTACTCAAAAGTACATTATCACCCCCAAAGTTTACATGAATTAAATGGAATTTGGACGGATGCTGAGGAATT TGACAATTATGGAATTGGAAGGGAGTCCTTTGCTTGGGCTTCACAAGGGGAAGAAATTAGTGACAGGCTTCGTTTTTTTG TTGAAGAGTGTGACAATATTCAGGTAACTACTTTTCACTTTATTAATCGTGTGGCTGGGTCTGGGGAATAATACTCATAT TGTTAGGGTTCTAAATTAGAGTCAGGGGTCCTGAGGTGTTTGGACCTGAGTTTAGTTTTATCTGTTTGCTTTTGTTATTT GGTTTGGCGTTAAGTTAGCTTTTACTATTTGAGTTGGACCTATGTTTGACCAGTGTTATTTACTTAGTAGGGTTAGTATT GTTATTTGGTTACTATTGTTAGTTAATTAGTTTAGTATAAATAAGAGTACTCTCCTTAGGTTAGAGCATGAATATAGTAA TGGAGGTTGTAAAGGGATTTTCCCTTGGAAGGGTTTCACCCGTGGAAAGAAGGTTCTTCTTGTGAATCCATTAGGACAAA AAATATTCCTATTTCCTCTTCCTTTATGTTGTTGTTGGCTGTTAGGGTTCTACAATCCTAACACATGTACCTTTGACTTT GACCCATGTAGTGAAACAATATATGACTGCTATATCTTGCGGCATCTGGATTTTCTATAAGCTTTCACTTTTAATGTCAA CTGTGTCTGTATTCTTTGTTTTCACCTTTTGGCTGCAAGGTCCCATTTTTGTGTAAGAATACATTGCTTAAATATAATGA CACAAATTACGCATTTCAAAAAATATTCCTTCATGATGAACTCAATGTGTCATAACCAGGAACAGAACAAGCACAACATT CATGAGTATGTAAAACCTATCCTGACCTAACATTATGGTCTCTCAATTCACGGACTCACTTTTTAACTAGATATCCAAAG CATTAACGGATAACCTTCTTTTCTTGCCCAGCTTACAATTTTTTGTGAGATTTTCAGATCTTGGTATCATTGGTATGATA AGTAAACATATGGCCTTTCTCCGTGGCCTTAGTCCATCAGGTTCTGAAAAAAAATTCAAATTGGTTTAACAATTTTAAAA TTTTGGCAGGGATTTCAATTTGTTGTTGACGACTCTGGTGGTTTCTCTGCTGTGGCTGCTGAATTTTTAGAGAATATTGC AGATGAATACCCAAATACTCCTGTCTTGTTGTATGCAGTCCAAGGCTCTAGTTCACATAAAAGTTTGAGCAGGAAGCATA CAATCTCAGCTGAGCTTCATGATGCTGTATCGTTTTCAAGACTATCATCCTTCTGTAAACTTATTGTACCTGTTGGTCTG CCCACATTAAGCAAAAGTAAATAATCTTCTGGTGTAGAACTTTTATGTTTGAGGAGTCAATAGTCAATATCCATCCTTGG TAATAGGCAGAAAATATGATGTTTAACATACTGATACTGTACTAATCTAAATGGCCAGAAGTCATTGATGACCTTGAATT GTTTTGTACTTTATTCTAATTCTAATATCAGACAATTTCTCACACTGATGTCAAATGTATTGGTGTTGGCTTGGCGATGC CTAATTTATAGATTCCAATACTCGTGATTCAATTATACTGATCCTACTTTTGCTGTCTTGATTATGGTCTAAAGTTTCTT TCTTTCTTTTCCTTAATTCAATAGGTAAAGCTTCTAAGTTCCTCCACATTGAAGATGAGAAGCATTACCATTCAAGTGCA GTTTATGCTGCTGCCCTACACTCTATTAGTCTTCCTTTCCGAATGGCACCAGTTGGGCCTGCTACAGATGCATGCTCGGT TTATGGGGCTGTAAATTTTCATGAAGTCATACAAATGTTATCAGGGCAAGGAAGGCAGAATATGGTGTCAGTTCTTGATG TTGCCATGCCCCTACTTGCTTTAACGGGTATAAGTGGATAATTTTTTAGTTGCTCTTGATAATAACTGTATTTATTGGTC TTATTTTTGGAATGCAGGGGGACAGAATGAATTGTCTTTGATAGGGAACTTGCATCCATTGACCCCACAGATAGCAGAGG ATGTTGAGGACATGCAGGCAATTGAGCACATAGCAGTCCATGGAGCTTTTGCATCAGGTATTAGAGAAAAAATGATTTTT CCCCTATGTGCCACAGTTTTCTGAAATTACATGAACAGTGTTCACCTCTGCAATGTTTGTGGCTCATTTCGTATAATTAC TTAGAAAACAGTAGGTTCTCTAGATCTCAACTTTACCATTCAAAGTGAGTCTCACTATAAAAACAACAGATTTCTGGATA AGCATATGTTATCAGTTCATCGGAGGTCACGAGACATGTCTTTGGCTAAAAGCAAAAATTAAATTAAGAAAAAGATAGAT AAAACATGTTTCGTGGAATTGGAAAGGTGGCGAATATGTTAATAGAGGTCTGAATTGAAGACAAACTACCAAAATCTATC ATAAAATGGCTAATAATACCAATGTTCCCTATCTATCTTTTCAGTTTGGATGAACTAAGGGATGAATTACTTAATTTTTT TCTTTTGTAATATAGCATAATTAGGTGGTATTTGGTCCTTGGTGTTTTTTTTTTAATCCACTGGTGGTATCCAAGACAAT TTAAATTTAGTTTGTTTTTATCTCCTCTTGCTTCCCCACAAGTTCTGTTCTCTTCATGATCATTTTTGTCTAAACTCTTT ACTGTTTTTGGTTCATTAGAAGGTCACCGTGCTTCAGTCTGCAAGGTAAAGGATACAGTAGATGCTGCTTTTCAACGTGC CAATACAAGGCCAATGTTCTGCCATCTAGCAGTAGCTCCCTGTCCCTTGCCTATTCCCCTGCCTTTCCCATCAATCTTTG CAAACCAAGTTGGCCGGCATGGCGAATTGATAGGCGGTCAAATGTCTAGTACTTCATCAAAAGGATCCCTTGACATCCAT TCCATTCCCATGGCTGCCCGATTGCGTTCCAGCAGTGCTGTCTTACCACTGCTCGAGAGTAAATTGCGAAATCTGAATCG GTTCGGAACTGCACGAGGAGCATCTGGGGCAGAGTTACTTAGAAGCTGGGGCTTTGGAAAGGAAGAATTGGAGGAAATGG GAGAGATGTTGTCTAAAATGGTTGCGGCTTTGAGTCCTCCTCAGTTCTCTTCCGATTCAGATTAGACTGCATACATTGTT CTTGATTCCAAAAAGCAAGAAGTGGGGGAACAATTCTAAAACTTACTAATTGTAACAAATTTTGATATATGTTGTGCTGG TTGTTCATGCCTTTTTACCTTGTTTGACTTTCAGGTGTTTTGTTGGTTAATGTTCTTTGTGACAAAGGACAGAAAAAGTA ACCCATGTTCAATGGTTCATTTCCTTTTTGTTAGTTATATTGCCTTTAGATTTTTTTTGACGGTATATTGCCTTTAGATT TATGTATAATTCAAGGATGAGAATAATATGTTTTTTGTTGTTGGTTATAACCTCCACCTCGTGTGTAAATGCGTAACCAG TGCAGTGCATATCAGTCCAACCCATCTCCCAAAGTTGAAGATCCCTATAATACCAATGATAAAGAATTGCATTTCCGCCT AAGAGAAGCAATGTACTTTTTAATTACTATGGTTTGAAAATTCATGTTGATTTCACTATTCAGTGTCACATTAAAT
CDS sequence (LotjaGi2g1v0398700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAAATAGTAACTCTCCAAATTGGTGATTTTGCCAATTTCATTGGCTCTCACTTCTGGAACTTTCAGGATGAGTT GCTTGGATTGGCTGGGGACCCTAATGCTGATTCAGTCTTCAAGAGTCCGGATCTTAACATGGATGTGCTTTATCGTAGTG GTGAGACACAGGGCATCAATACATATACTCCTCGCCTAGTTTCAATAAACTTGAGAGGATCCCTTGGATCTATGAGCTCA CGTGGTACGTTGTATAAGGAGGTTTCTCCCACAACATGTGTGACCTGGACAGGTAGAGTTTCCACCGAATCCTCTCAGAC TCACAAAAGAAATTTATTTCTACAAAGACTTAATGAAGAAGAGGAAAATATGAGTTTGGCAAATGAGATTAGTGGTACAG ACAATGGTTCTCAGAGTGAGTATCAGGATAATGATATAGTTGAATGTCTAGAAAATGGTGTTAAGTTTTGGACTGACTAC TCAAAAGTACATTATCACCCCCAAAGTTTACATGAATTAAATGGAATTTGGACGGATGCTGAGGAATTTGACAATTATGG AATTGGAAGGGAGTCCTTTGCTTGGGCTTCACAAGGGGAAGAAATTAGTGACAGGCTTCGTTTTTTTGTTGAAGAGTGTG ACAATATTCAGGGATTTCAATTTGTTGTTGACGACTCTGGTGGTTTCTCTGCTGTGGCTGCTGAATTTTTAGAGAATATT GCAGATGAATACCCAAATACTCCTGTCTTGTTGTATGCAGTCCAAGGCTCTAGTTCACATAAAAGTTTGAGCAGGAAGCA TACAATCTCAGCTGAGCTTCATGATGCTGTATCGTTTTCAAGACTATCATCCTTCTGTAAACTTATTGTACCTGTTGGTC TGCCCACATTAAGCAAAAGTAAAGCTTCTAAGTTCCTCCACATTGAAGATGAGAAGCATTACCATTCAAGTGCAGTTTAT GCTGCTGCCCTACACTCTATTAGTCTTCCTTTCCGAATGGCACCAGTTGGGCCTGCTACAGATGCATGCTCGGTTTATGG GGCTGTAAATTTTCATGAAGTCATACAAATGTTATCAGGGCAAGGAAGGCAGAATATGGTGTCAGTTCTTGATGTTGCCA TGCCCCTACTTGCTTTAACGGGGGGACAGAATGAATTGTCTTTGATAGGGAACTTGCATCCATTGACCCCACAGATAGCA GAGGATGTTGAGGACATGCAGGCAATTGAGCACATAGCAGTCCATGGAGCTTTTGCATCAGAAGGTCACCGTGCTTCAGT CTGCAAGGTAAAGGATACAGTAGATGCTGCTTTTCAACGTGCCAATACAAGGCCAATGTTCTGCCATCTAGCAGTAGCTC CCTGTCCCTTGCCTATTCCCCTGCCTTTCCCATCAATCTTTGCAAACCAAGTTGGCCGGCATGGCGAATTGATAGGCGGT CAAATGTCTAGTACTTCATCAAAAGGATCCCTTGACATCCATTCCATTCCCATGGCTGCCCGATTGCGTTCCAGCAGTGC TGTCTTACCACTGCTCGAGAGTAAATTGCGAAATCTGAATCGGTTCGGAACTGCACGAGGAGCATCTGGGGCAGAGTTAC TTAGAAGCTGGGGCTTTGGAAAGGAAGAATTGGAGGAAATGGGAGAGATGTTGTCTAAAATGGTTGCGGCTTTGAGTCCT CCTCAGTTCTCTTCCGATTCAGATTAG
Protein sequence (LotjaGi2g1v0398700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEIVTLQIGDFANFIGSHFWNFQDELLGLAGDPNADSVFKSPDLNMDVLYRSGETQGINTYTPRLVSINLRGSLGSMSS RGTLYKEVSPTTCVTWTGRVSTESSQTHKRNLFLQRLNEEEENMSLANEISGTDNGSQSEYQDNDIVECLENGVKFWTDY SKVHYHPQSLHELNGIWTDAEEFDNYGIGRESFAWASQGEEISDRLRFFVEECDNIQGFQFVVDDSGGFSAVAAEFLENI ADEYPNTPVLLYAVQGSSSHKSLSRKHTISAELHDAVSFSRLSSFCKLIVPVGLPTLSKSKASKFLHIEDEKHYHSSAVY AAALHSISLPFRMAPVGPATDACSVYGAVNFHEVIQMLSGQGRQNMVSVLDVAMPLLALTGGQNELSLIGNLHPLTPQIA EDVEDMQAIEHIAVHGAFASEGHRASVCKVKDTVDAAFQRANTRPMFCHLAVAPCPLPIPLPFPSIFANQVGRHGELIGG QMSSTSSKGSLDIHSIPMAARLRSSSAVLPLLESKLRNLNRFGTARGASGAELLRSWGFGKEELEEMGEMLSKMVAALSP PQFSSDSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 567 | 567 | 6.3E-198 | – | |
| SUPERFAMILY | 1 | 333 | 333 | 8.24E-37 | ||
| CDD | 2 | 532 | 531 | 8.98599E-166 | – | |
| Pfam | 2 | 118 | 117 | 8.7E-30 | ||
| Pfam | 152 | 332 | 181 | 1.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0398700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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