Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0408900 |
| Transcript ID | LotjaGi2g1v0408900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G37630.1 cyclin d5;1; Swiss-Prot: sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1; TrEMBL-Plants: tr|A0A151SC53|A0A151SC53_CAJCA Cyclin-D5-1; Found in the gene: LotjaGi2g1v0408900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90593699..90596498) extracted from Lotus japonicus Gifu genome v1.2.
CATTAACTCGCATTTGTCCGTAATTCTATAGAACAAATAGTTAAATACAATATATTAAAACCCTACTTGTACCATATAGC ACTGCCCCATGGTCTTAATATTGTGGACTCTGGAATCTCCCAACATTTGGAGAGATTTCATAATGGCCTAAGCTACAAAG CCCACAACACTCTACTCTCTCATTACACACAGTTGAAAAGCCTGTAACTGCTAATTAACTTCCCTCTATATATCATCTCC TTATTTTGGCGGCACCAAAACCGCCACTTCCCACTAACTCATATCCACTCACCACTTCTACTTCCTCGTATCCATTCTCT CTCTCTCTCTAGATTTCATAGTATTTAGTAGTGGTTTGTTCCACGACAACATAAGTTGTAAACTTTGAGAGAGATTTTGC TCAAAACTCAATGGGGGGCTCTGGCAATTCTTTTTCTTTGTCCAGTCTCATGTGTGAAGAAGTTGAAGCTACCTTCTTTG AAGATGAAGAAAACACTTGCATTGACTCAATTGAAAACCCATGTTTCGTTTTGGAGGATGATGATGATGAGGAATATATT GAGTACTTGTTCAGACAAGAAACGGGGCTTGGGATTGGATCCCAGATTCATTTCTTGTCTTGTGATGATGATCACTCAGA AAGATGCTGGATGATGAGTGCTCGTTTGGATGCCATTGATTGGATTTTCAATGTTAGTTTTTCATCACCTACCTAAACTA ATCAATTTTAAACGTAATTTACTAGTTTTGGTTGTTCTGATATTGGAAGTTTTTGTTGCTGATTGATTCAGACACAAGCC AGATTTGGATTCTGTGTTCAGACAGCTTATTTATCAGTCACTTATTTTGATCGGTTTCTTTCCAAGAGAAGCATTGATGT AAGCTTTCAATTTGTTTCTTAAACTCAACCTTATTGCATGTTTAGATACGCGGTGTAAAACTGCAGTGGACAGAAGCAAG TTTTGTGCTGCCACCGTGATTTTGGCTTTATCGCGTATCCAGTCAAAAACTTAGAATCAGTATAGTTCTAATGATTTCTT TCAGATTTTGTTTATTTTACTATCTTTTTTCTCTTGTTTTTGTTTCTGGAATGATACAGGAATCAAAACCTTGGGCTATT CAATTGTTATCAGTGGCATGTTTATCACTGGCTGCAAAGATGGAAGAGCAAAGGGTGCCTCCTCTGTCTGAATATCCAAT ACAAGGATATTGTTTTGAGAACAAAGTTATTAAGAACATGGAGCTTCTGATTTTGAGTACCTTGGAATGGAGAATGGGAT TAGCAACTCCTTTTGCTTATTTGCATTACTTTGTTAGCAAGTTCTTCCCTGGATCCAGACCAGAAACAATAATCACAAAA GCCACAGAACACATTGTGACCATGGTCAGAGGTAATTTTTTTATTGGCAATGCAATTCTCTCATCAAAGAACAATATCAA AATTATATATAAAAGTGATTTTTTTTCTGTGCAGATGTTAATTTGATGGACCAAAGGCCATCTATAATTGCCTCTGCTTC CATATTGGCTGCTTTTGATGCTACATTAACAAAAAAGGCTATTGATCTTCGCATTAGCCTAATCTCATCATGGGGAAATA TAGAAAGTGTGAGTTTATTTAGCAGTGAATAGACAAGTATTTGTTTTCCCTTCAAATCTTATCTTATTATGTAGATAGTG CATGTTTGGGACCTTTCTGCAATTGATTCTGAAGTTGAAGAAACTTATGCGAGTAGCTTTTGGATTTCAGAATTGATTTG ATTGAAAGAGAAACTCATCCAAACTTGCTAATAGAGGATTGAAAGAAAATAACAGTACAGAGTTTAATGATGCTTCCTTT TTAATATGCAACAGGAACATGTATTTTCCTGTTACAATCTTATACAGGAAAAGACTAGAGACAAAGTTAAGACACCTTCC TCAACTTTATTGTCAAGCTCCACGTGTGTTCTTGAGAACCAATCTAATACTTCAACAGGAATTAAGAGAAAGCTTTGTTA TGAGGACAGTGAAAATTGTTCTGAACCAAAGCTACTTCGGCCTTAGTTTTGCACCTCGCAAGAGTTTGTCTTCTCTATAG AATGAAGAAAAATATTTATTGGTGTTTGTTTACTGATTGGATTATAGGATCTTTTTTTCCACTGAAAAATTGTTATGGTT AGTTTATAGGCCTAATGAGTGTCATCCACCATTTTTGTGGAATTATTTGGTATTCTTGATTGAGGTTTTGTTTCTGAATA CCCAACTTCCTAGAGTGACAACCAAGAAGATAGAGAAAAAGAACGAGTAAATAAATAACAAGTGGTTTAGCTACACCTTA AAGTAAGTGTGAAGGTGAGTTAAAGTTCACAAGCATTGAGAATGAGGTGAAATGAAAGATGTTACATGTGTGAAAGCTAT TGAAGACTATTTCTCCAAAGCCATAGTGCTTGCTTTCTTCAACTGCTCCTACTATACATTTCTACTTTTTCAACTGCATT TCCTTCTTTCACTTTTTTTTTTTTGCTGTGATGGGAATTATTTGTTGAAATATGTATACAATAATAGCAATAGCAATTTA TACCCATTGATGGGAGCTTGGGATGCTTTCTATGTATTGGGAAAGGCTTCAATGGAGAATGGGGAAGTGGTCTTGTTTGA TTTGATGTATCTTTGCAGCATTTGGGTTGGGGCATTGATAAAGCTTGTAAAAGTTGAATGTGATATTTGATTATTTTGTG TTTGCTTGGGACATTGGAGGAGGTTCTTTTCAGGAGGAAATAAACCCTCCATTAACTATTATAGCAAATTTGGATTCACG
CDS sequence (LotjaGi2g1v0408900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGGCTCTGGCAATTCTTTTTCTTTGTCCAGTCTCATGTGTGAAGAAGTTGAAGCTACCTTCTTTGAAGATGAAGA AAACACTTGCATTGACTCAATTGAAAACCCATGTTTCGTTTTGGAGGATGATGATGATGAGGAATATATTGAGTACTTGT TCAGACAAGAAACGGGGCTTGGGATTGGATCCCAGATTCATTTCTTGTCTTGTGATGATGATCACTCAGAAAGATGCTGG ATGATGAGTGCTCGTTTGGATGCCATTGATTGGATTTTCAATACACAAGCCAGATTTGGATTCTGTGTTCAGACAGCTTA TTTATCAGTCACTTATTTTGATCGGTTTCTTTCCAAGAGAAGCATTGATGAATCAAAACCTTGGGCTATTCAATTGTTAT CAGTGGCATGTTTATCACTGGCTGCAAAGATGGAAGAGCAAAGGGTGCCTCCTCTGTCTGAATATCCAATACAAGGATAT TGTTTTGAGAACAAAGTTATTAAGAACATGGAGCTTCTGATTTTGAGTACCTTGGAATGGAGAATGGGATTAGCAACTCC TTTTGCTTATTTGCATTACTTTGTTAGCAAGTTCTTCCCTGGATCCAGACCAGAAACAATAATCACAAAAGCCACAGAAC ACATTGTGACCATGGTCAGAGATGTTAATTTGATGGACCAAAGGCCATCTATAATTGCCTCTGCTTCCATATTGGCTGCT TTTGATGCTACATTAACAAAAAAGGCTATTGATCTTCGCATTAGCCTAATCTCATCATGGGGAAATATAGAAAGTGAACA TGTATTTTCCTGTTACAATCTTATACAGGAAAAGACTAGAGACAAAGTTAAGACACCTTCCTCAACTTTATTGTCAAGCT CCACGTGTGTTCTTGAGAACCAATCTAATACTTCAACAGGAATTAAGAGAAAGCTTTGTTATGAGGACAGTGAAAATTGT TCTGAACCAAAGCTACTTCGGCCTTAG
Protein sequence (LotjaGi2g1v0408900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSGNSFSLSSLMCEEVEATFFEDEENTCIDSIENPCFVLEDDDDEEYIEYLFRQETGLGIGSQIHFLSCDDDHSERCW MMSARLDAIDWIFNTQARFGFCVQTAYLSVTYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQRVPPLSEYPIQGY CFENKVIKNMELLILSTLEWRMGLATPFAYLHYFVSKFFPGSRPETIITKATEHIVTMVRDVNLMDQRPSIIASASILAA FDATLTKKAIDLRISLISSWGNIESEHVFSCYNLIQEKTRDKVKTPSSTLLSSSTCVLENQSNTSTGIKRKLCYEDSENC SEPKLLRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 298 | 290 | 3.7E-111 | – | |
| PANTHER | 9 | 298 | 290 | 3.7E-111 | ||
| SUPERFAMILY | 43 | 182 | 140 | 4.92E-31 | ||
| Gene3D | 81 | 183 | 103 | 1.4E-37 | – | |
| Pfam | 82 | 182 | 101 | 7.8E-25 | ||
| CDD | 85 | 175 | 91 | 8.4492E-15 | ||
| ProSitePatterns | 85 | 116 | 32 | - | ||
| SMART | 90 | 176 | 87 | 1.5E-15 | ||
| Gene3D | 184 | 273 | 90 | 1.4E-37 | – | |
| Pfam | 186 | 283 | 98 | 2.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi2g1v0408900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…