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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0411600 |
| Transcript ID | LotjaGi2g1v0411600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BSD domain protein; TAIR: AT3G49800.1 BSD domain-containing protein; Swiss-Prot: sp|Q960T2|SAP47_DROME Synapse-associated protein of 47 kDa; TrEMBL-Plants: tr|I1LH45|I1LH45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0411600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:90833099..90836860) extracted from Lotus japonicus Gifu genome v1.2.
AGAACAGATTTGTGCGGTGCGAAACGGCGTCGTAGCTTGAGGTCTTATCTGGTTTAACAAGTCGTAACACAATCGCAAAC TTGTGAGAGAGGTGCGAATCAAATCAACCATGTCATGGTTCGCAAAGACAATCGCAAACTCACTCAGACTCGACGAAGAA GAAGAAGAAGAAGAAGAACAAGACGAACAACAAGATGAACAACACAACAACAATGGCGCTGACCTCAAATCACAATCCGA TTCACCATCCGCATCCGCATCCGCATCTACTCACAGCCCCACCGCACGCGGCGTCAAGGAAGATATCTCCGAGCTCACCA AATCCTTCTCGCGCCAGTTATGGGGCGTCGCCTCCTTCCTCGCTCCTCCTCCTCCTCCCGATCCGGACCACGACGCCGCC TCCGATCCCAATCGAAACCCCGCCGATGATGAAGAAGAGGACGTTATTGCCGGAATCCGAAGCGATTTCGCTGAGATTGG TGGGAGATTCAAGAGCGGGATCTCTAAGCTCTCTGGTCATAAGACCGTCTCTGAGATCACCAAGATCGCTTCTACTTTCC TTCAGCTTGGATCCGAACATCAACGCGATCTCGACGGTGTGATTGGAGTCACTGAGGACGTCGTCGCCTTCGCCAGAAAC GTCGCGATGCATCCGGAAACTTGGTTGGATTTCCCTCTTCCCGATGATGATCCTGATTCTGATGGTATATTCAATTATTG CGGAATTTGTCTGAAAATTCTATTTACCTTTCGAATTGAAATGTCTAGGTCATTGATTTATATATCTTAGCTTAGAAATT CCAGAAAATCTATACGATTCTTCCTGATAATTTGTGAATTACGTTCTGCAGAATTTGATTTGACCGATGCACAACAAGAG CACGCTCTTGCTGTTGAACATCTGGCTCCGAGATTAGCAGCTCTGAGAATGGAGCTTTGTCCTGGATATATGAGCGATGA TAACTTTTGGAAGATTTACTTTGTGCTTCTGCATCCTAAACTCAATAAAATGGATGCTGCTATTTTATCAACCCCACAAG TAAGCTTATTTTAATTCAGTTTGGTTTTCTTTCTTTGATGCATTTGTTTGATTGAATTAGAGACAATGGTAGGAATTTTA TTCTTTATAGTCTTTGCATCTGAATCTTATAGTTTGATTTTTAGAAATTATAGGACATAAATGTGTAAATTGTAACTAGC TTACATGATCAAATCTTATAGTTGGAAACCTTTGTGAATTATGTGAGATCCTTCTGTATCACTACAGCAAATTGTTGAAG ATGTTTCGGAACAAACTGTTAATTTTGGTATTGTTAGTTATTCTGCTTGCCTGTATAACAAGCAATTCGTGTTTTGCGTG TAGATAATGGAAGCTAGAGCAATGTTAACTCATGAATTAAACAGAAGAAGTCAGGAAAAGAAAGAGCCTGACTCATCTGC AAGAAGCAATACTCCCTCAAAAGAGGAAGAAGAACAGCATCTCTTTGTGCCAAGTAATGATCAACTTGAATCAAAACCTC TTCAGACGTCTGCTGTTGAAGCAGCTCCATCTGCGGTTGTGTCTGATGTTGAGATGGAGAAACATCCCATCGAAAGTGAT GTAACAAAGATTATTGACAAGTCTGTGGTTAAAGAAGAATCGGTCAATCCAATTGCAGAACAGTCATCATCTAGTTCAGT AAATAGATTTTCATATGAAACCTATGAGGATGATGCGGATGATTGGTTGAAAGAGGATGATAATTCTGAAATGGTTGGTC CCAGTGGAACATCTGTTCATACTGGTAATGAAGAGGATGTATCATTCAGTGATCTTGAGGAGGATGATAGTGATGTGCAA GCAAGTTATAAGAAAACTAGATCAGGCTCTGATTCTTCCACAAAAGACTCTCGAGATTGGGTTCAGCTAGGAAGAAGTTC GCCGAACTCGGATAAGGATATCACCTCTGTTGAAGGCAGACATGCAGGATCTGATCATTCAAGTGCTCGCAATTCTGTGA CCAAGGATTCTAATGATTGGCTTAATGTTGATGACATTGATGTAATATGATACTGCCACGAAAAATGTTCTAGAGGTAAG TTATTTCATATAATTCATTCTATTTTGTGAATATTTGCATATATACTCTGTGAGTCTGTGTTCTGTATGGTTAACCTCTG AAGACCGTGCTTGTGTAAATAAAGCCAGTCTCCACTGGGCTCTGTACTATGTATGGTTTACCATGCATCAACTAAATCTT TTAATTGATATCAGAATTCCCAGAATGAGTTTGTTAATACTTTTATAACTGAATGATGTTGTTTTTACATGATCCTGAAT GAAGCCTGACTTGATATTATCAGTTGTGGCCACGCTCTATTAAAATACATTGGTTTATTATAGCGACTGGAATATATGAA CAAGAGTTATGAATAGAAAAATTTCTAAGCACCTGAATGTATAATCTTCTAACTATTTGGTTGAGATGTTTACAGTATAG TTTAACCACCGGACGCTTTAGAATTTACTTGCAGTCTTACACCATAATTGCAGGCTAATACATAGCTATTGTGTCTAAAG ATCTGAATTCTGAGCTCCTGGTGTCTAATGCTTGATATATTTCATCCTTAGTTGATCTTGAAGTTGTTAGATCATGAAAA AGGGTTCAAGCGGTGTCAGTTCTACACTTCGAAGTTGTAATTGTCTTGCTTTCTACTCTCATTTTGACTTTTATTTTTTA TTTTTTATTTTAAAAATCATCCGGTATTTTTTGAATTTGTGTTTCTCAATAAATATGAAGATTTCTCCTCATCTTCTTGG TATTTTTTTTTTAATTCATATAACAATAAATGATATTAATTTGCCACACATTTTTTAAAATGCCTTATTTTGATTCTTGA TCATATAAAAGAAGTTAGTCCCATGTTCAAACGACATTATGAAATTGTGGTATTTCACTTGGTTCATTACATTTGGCTGA TCAAAATTGATTGATTTGCACCAAAATTCCTTATTAAATAAAAAAGTGGTCATCGAGAATTAAAATGAGATTACTTCAGA AGATGAAAGAGCAATGATTTTTATTCTTAACTAGGGATGAAAATTAAATATTTTATACTTGGAGTAAAAATATATTATAC CATTCATTCTTTCCTTTTGCATCCTGTGATTTCTTTCTAACCCTTTCTTTTAGCAAACACCAAACTCCCCAAAAAATTAT CTTGATGTTTTTTTCAAAAATACAGAACTTGCACTTGTCTTTGTCATACAAATAAATCATAGAAACAGAGCACCATACCC CTCCTAACAGAACCACCATCAAAGAAATCAAAACCTCATGGCCACCAACTTCTCAGCCAAATACCAACACTAACTAAACC TCAACCACAACCTTCTACAGGAGATTTACCCACAGCTACTATCTTCAAACTCCCCCCAAATCATCAAATCAGTTACCATC AAGACGAGCCATTTATGAACCACACCACCACCGACCTGAACTTCCCCAATCACCACCAATCAAAGAGGAAGATGACAGAA AACCCAAACCGGAAACCACCACAACCAAACCTTCGTTCTAGTATTCGGTGACCGCCTCAAGCAGCTCAACCATGGGAATC CAAGCCACCGTCACCAGAACCAACCATACCTGCTCCTTGCCGTCATTTCGTCACCTCCGAGTAGTAGTCGCCGCCGCGCC ACCACATGAACCACATGAACTGTGGCCTTGATTCTTCGATCGCAACGAACAATCGGCCCTTTTAATGGGTCCATTTTACA AG
CDS sequence (LotjaGi2g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATGGTTCGCAAAGACAATCGCAAACTCACTCAGACTCGACGAAGAAGAAGAAGAAGAAGAAGAACAAGACGAACA ACAAGATGAACAACACAACAACAATGGCGCTGACCTCAAATCACAATCCGATTCACCATCCGCATCCGCATCCGCATCTA CTCACAGCCCCACCGCACGCGGCGTCAAGGAAGATATCTCCGAGCTCACCAAATCCTTCTCGCGCCAGTTATGGGGCGTC GCCTCCTTCCTCGCTCCTCCTCCTCCTCCCGATCCGGACCACGACGCCGCCTCCGATCCCAATCGAAACCCCGCCGATGA TGAAGAAGAGGACGTTATTGCCGGAATCCGAAGCGATTTCGCTGAGATTGGTGGGAGATTCAAGAGCGGGATCTCTAAGC TCTCTGGTCATAAGACCGTCTCTGAGATCACCAAGATCGCTTCTACTTTCCTTCAGCTTGGATCCGAACATCAACGCGAT CTCGACGGTGTGATTGGAGTCACTGAGGACGTCGTCGCCTTCGCCAGAAACGTCGCGATGCATCCGGAAACTTGGTTGGA TTTCCCTCTTCCCGATGATGATCCTGATTCTGATGAATTTGATTTGACCGATGCACAACAAGAGCACGCTCTTGCTGTTG AACATCTGGCTCCGAGATTAGCAGCTCTGAGAATGGAGCTTTGTCCTGGATATATGAGCGATGATAACTTTTGGAAGATT TACTTTGTGCTTCTGCATCCTAAACTCAATAAAATGGATGCTGCTATTTTATCAACCCCACAAATAATGGAAGCTAGAGC AATGTTAACTCATGAATTAAACAGAAGAAGTCAGGAAAAGAAAGAGCCTGACTCATCTGCAAGAAGCAATACTCCCTCAA AAGAGGAAGAAGAACAGCATCTCTTTGTGCCAAGTAATGATCAACTTGAATCAAAACCTCTTCAGACGTCTGCTGTTGAA GCAGCTCCATCTGCGGTTGTGTCTGATGTTGAGATGGAGAAACATCCCATCGAAAGTGATGTAACAAAGATTATTGACAA GTCTGTGGTTAAAGAAGAATCGGTCAATCCAATTGCAGAACAGTCATCATCTAGTTCAGTAAATAGATTTTCATATGAAA CCTATGAGGATGATGCGGATGATTGGTTGAAAGAGGATGATAATTCTGAAATGGTTGGTCCCAGTGGAACATCTGTTCAT ACTGGTAATGAAGAGGATGTATCATTCAGTGATCTTGAGGAGGATGATAGTGATGTGCAAGCAAGTTATAAGAAAACTAG ATCAGGCTCTGATTCTTCCACAAAAGACTCTCGAGATTGGGTTCAGCTAGGAAGAAGTTCGCCGAACTCGGATAAGGATA TCACCTCTGTTGAAGGCAGACATGCAGGATCTGATCATTCAAGTGCTCGCAATTCTGTGACCAAGGATTCTAATGATTGG CTTAATGTTGATGACATTGATGTAATATGA
Protein sequence (LotjaGi2g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWFAKTIANSLRLDEEEEEEEEQDEQQDEQHNNNGADLKSQSDSPSASASASTHSPTARGVKEDISELTKSFSRQLWGV ASFLAPPPPPDPDHDAASDPNRNPADDEEEDVIAGIRSDFAEIGGRFKSGISKLSGHKTVSEITKIASTFLQLGSEHQRD LDGVIGVTEDVVAFARNVAMHPETWLDFPLPDDDPDSDEFDLTDAQQEHALAVEHLAPRLAALRMELCPGYMSDDNFWKI YFVLLHPKLNKMDAAILSTPQIMEARAMLTHELNRRSQEKKEPDSSARSNTPSKEEEEQHLFVPSNDQLESKPLQTSAVE AAPSAVVSDVEMEKHPIESDVTKIIDKSVVKEESVNPIAEQSSSSSVNRFSYETYEDDADDWLKEDDNSEMVGPSGTSVH TGNEEDVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSRDWVQLGRSSPNSDKDITSVEGRHAGSDHSSARNSVTKDSNDW LNVDDIDVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 488 | 488 | 1.1E-160 | – | |
| MobiDBLite | 1 | 67 | 67 | - | – | |
| PANTHER | 1 | 488 | 488 | 1.1E-160 | – | |
| Coils | 9 | 34 | 26 | - | – | |
| MobiDBLite | 14 | 28 | 15 | - | – | |
| MobiDBLite | 34 | 60 | 27 | - | – | |
| MobiDBLite | 81 | 109 | 29 | - | – | |
| MobiDBLite | 95 | 109 | 15 | - | – | |
| SUPERFAMILY | 166 | 253 | 88 | 7.85E-21 | – | |
| Pfam | 196 | 251 | 56 | 4.5E-13 | ||
| SMART | 197 | 249 | 53 | 4.8E-13 | ||
| ProSiteProfiles | 197 | 249 | 53 | 12.107 | ||
| MobiDBLite | 274 | 303 | 30 | - | – | |
| MobiDBLite | 274 | 327 | 54 | - | – | |
| MobiDBLite | 304 | 322 | 19 | - | – | |
| MobiDBLite | 381 | 489 | 109 | - | – | |
| MobiDBLite | 391 | 405 | 15 | - | – | |
| MobiDBLite | 435 | 453 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0411600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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