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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0416000 |
| Transcript ID | LotjaGi2g1v0416000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplast 40 kDa outer membrane envelope protein; TAIR: AT3G57990.1 hypothetical protein; Swiss-Prot: sp|Q8BI22|CE128_MOUSE Centrosomal protein of 128 kDa; TrEMBL-Plants: tr|A0A1J7G2H0|A0A1J7G2H0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0416000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91374606..91377820) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATCACTCTTCTTCCACGTCTTCATCATCTTTCGAACCAAAAATAAAAATCCTCCTCATCCTCTCTCTCTCTGTAGC TTTCATGGTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCTGGTTCACCCTTCCTTGTAATTCCAACCTCACCTTC TGCAACATGAAGCTATCTCTCAAGTTTCACGGCGATGGCACTGAAGAAGATCAACAACACAGCACCCAAATCATGACAGC AAAAGTACCCATCACTGTACTCAACAACCCCTTCATCTCCGCCGTCAAAGCAACCACCACCACCGCCAACTCTGAATCCT CCGAGTTTTCCTTCTCACTCTCCACCAACTTCCCAACCGGTCCATCCTTCAAGCTCGCTTACTCCCCCACCGCCTCCTCT CTCCCCCCCTTCTCTCTCTCCCTCAAATCCGGTCTCGGTACTTCCGGTTCCCCTCGCCACTCCCCTCTCACCTTCTCCGC CAACCTCTCTCTTTCCCTCTCTCCGACCACCAACACCTTCACCCCTGTCCCGTCTTTCTTCCTTCACTTCAAACCCCAGT TCGGCCACTTCTCTCTCAACAAAACCGTCTTCTCTGAACCTAAATCCGACCCTAGCACCGACCCTGTTTCTCTCCCCACC GCGCCACAACCTGATCATCGTGAATCTCAAATTGGAAGAAAGGGGTTTGTGGTGGATGGATCATCTGGTTGGCAGGAACT GAAATTGGAGCCTTATGATGTTGTCTCTGAAAGGGGATTGACTGAGAAGAACGGTGCCAAACACGGGCTTTCGCCTGGCG TTGCGGTTATGGCGAGGACGGTGGTGCCATTGACACAAGGGCTGTCATTGAATTTTCGATGGGGTGTGAATTTTCCGAGG AATTTGGTGTTGAAATTGCCTTATTTGACTGTGAGCAAGATAGGGTTAGAGAGGGTTGTTGAGGAAGTGAAGCAGAGTAA GCAGAGCCAGGACAGTTCTGATGGAGATAAGCAGCTGTTGAAGGGTGTTTGCTTTTGGATGAAAAGGGATTTGGAGAATG TTGAGAAGGAAAATAAGGAGATGAAACGAGTTTTGGAGGAGATGAAAGTGGGGGTTTCCACGAGTTACCGTGAAGCAAGC ATTAATGGAAACGTCGAGAAGAGGCTTTCGCCGCAATTGGGTGAAGTCTCTAGTGAGTTTCAGCGTTGGAGAAGCAGCAA GAGTGATAGACAGGAGAATGAGAAGAAGCAACAAGATAAGTCTCAAAGCGTAGCGAGTGATTTGGAAGCGGAATTGCAGA AAGCCATCAAGGCTGCTTCCTCATAGCAAGGTCTTAAGGTCATCACTACCACTTTTTAATGCTTTCTAAGTTTGTCTGCC TTGTCTTGCAATGTGTATAAAATCTCAGTTTTTGTTTATTTTTTGTTGTAATCTACAATTGATAAATGATACTTCTATAT GGTACATGAGGGATATTATGAGTAGCTAGACCATTTGGTTAAGTGTAATACTGTAATCAGAACTGAGCCAGGAAGCTGCA TTTTGATGGATGTTATACTGTCTATGACTAGTTGATAATATGATACAGTACAGATTGGTGAGATATCTGAACTCCTTCCC ATATCCAATGGTTAACTGGGATTATATTTGACATGGAGTCTCACTGCATGTGTTTAGGGTACTTTTGGAAGAGTTTATTT GGACATAGTTTACAGCATAAGCACTTTATGCAAATCTGATAAGCTTATGAAATACCTATCTATAAGATATTTTGAGCTTA TTTGCATAAACTTATGAGATTAGCTTATGAATAAGAACTTATGTCTATCTATAAGCTAATTGAACTTATGTTAACAAGTT TATCAAATAAGCTTCTAAATGAATGCTTATGTGATAATGACTTATTGTTGATAAGTGTTTAATTAAGCCATTTACTCAAA GTCTCCTTGCCTAGCCACTGTTTATTAGTGTTCTTGATTTCTGGCAAGTTAGAGTAGTCTATAGTTTAGATCATCAGATA TTGATTATGTCTTGAGCAATTTATACTATATCCTCACCCTGCTTTGGAGTTGTGATTCTGCCTTTCATATGAAATAATGC TTTCCTATGATGTCTCTCCCCCCAGTCCCCCGTCTCAAAATGCTTGAGGATTCCATTTTCTTCAAGTTGGGAACTTTTTT GAAACAACTTGAATTGATGTTTCTTTTGATAAGATTTTTTTAATTGCAACTGGGAGAATGCTATGGAAAGTGTTATTCAG TGGGCATCTGGGTGTTTATCGTGCTTTCAATCAACAATTTTAACTTACTAAATGGAAAATTATAATTATCCTATCATAAA AAAGAATTTACACTATTTTCTTTTGAAGGAAGCTTTCTGAATTGTTTTCCAAAGTTTCTTCGTTTACTTTTTTAGTCTTC TTTATCTATTGATTTGTTTGAAAATAAAGGACTAAAGTTTTAGTTCCATTTTGATTTAAAAATAATCATGGACAAAACAA ACTCATGAACATGTCCAACGGTGGTTGCTTTAACTTTAGCTACTCTTGTGCCAATTGCTTTATTGACGAAGAGCAACTCA ATAAGAAAAAAACGCCTTTTCGTTGTCACCATATGGCTAGTTTTCTATTGCTATTTCTAGCTTGTTGAATTAAGGCAAGG CTTCGAAGTCCCTCTCGCTGGATTCGTTTGAAGATGGCATCGATTCTAACAACACACGTTCTTCGAAACAGGAGGACCAG CCGCAGGCTGGAGGGGAGGCACCCAATCTCCCAATGGAGGTCATGGGGCCACACGCCCCTAATCTATATTTCCTATAGAA AAAAAAAAATTCTACAAATTCCGTGACTCTTGGGATATTGTGGGGACCTAGTTAAAATATGAAGTTGATAATGGTATCTA TTTAAAAAATTCTTCGAGGTAGATAGGTTAAAATGATATTAGTTAGTTGGTGTAGTGGTTTAAATTTTCGTCCCTTAGTA AGTGATTGGGGGGTTCGAATCTTAACTCATGTGAATGGATAAATCTCTTTGGGCAAGTATCCTAATGCTAATGCATTAAT AGTGGAATGAGAGATTAACCTCATAATTATCGATAGTTAAAAAAATTAAATAAAATTAGTGAGAATAAAAATGATGTGAC ATTATGAAATATTATTGAGAATACATGAAATGGGTGATGAAAAATGAAGAGAAAAAATATTTTTATGAAATGACATTTTT AACCAATATTATATA
CDS sequence (LotjaGi2g1v0416000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTATCTCTCAAGTTTCACGGCGATGGCACTGAAGAAGATCAACAACACAGCACCCAAATCATGACAGCAAAAGT ACCCATCACTGTACTCAACAACCCCTTCATCTCCGCCGTCAAAGCAACCACCACCACCGCCAACTCTGAATCCTCCGAGT TTTCCTTCTCACTCTCCACCAACTTCCCAACCGGTCCATCCTTCAAGCTCGCTTACTCCCCCACCGCCTCCTCTCTCCCC CCCTTCTCTCTCTCCCTCAAATCCGGTCTCGGTACTTCCGGTTCCCCTCGCCACTCCCCTCTCACCTTCTCCGCCAACCT CTCTCTTTCCCTCTCTCCGACCACCAACACCTTCACCCCTGTCCCGTCTTTCTTCCTTCACTTCAAACCCCAGTTCGGCC ACTTCTCTCTCAACAAAACCGTCTTCTCTGAACCTAAATCCGACCCTAGCACCGACCCTGTTTCTCTCCCCACCGCGCCA CAACCTGATCATCGTGAATCTCAAATTGGAAGAAAGGGGTTTGTGGTGGATGGATCATCTGGTTGGCAGGAACTGAAATT GGAGCCTTATGATGTTGTCTCTGAAAGGGGATTGACTGAGAAGAACGGTGCCAAACACGGGCTTTCGCCTGGCGTTGCGG TTATGGCGAGGACGGTGGTGCCATTGACACAAGGGCTGTCATTGAATTTTCGATGGGGTGTGAATTTTCCGAGGAATTTG GTGTTGAAATTGCCTTATTTGACTGTGAGCAAGATAGGGTTAGAGAGGGTTGTTGAGGAAGTGAAGCAGAGTAAGCAGAG CCAGGACAGTTCTGATGGAGATAAGCAGCTGTTGAAGGGTGTTTGCTTTTGGATGAAAAGGGATTTGGAGAATGTTGAGA AGGAAAATAAGGAGATGAAACGAGTTTTGGAGGAGATGAAAGTGGGGGTTTCCACGAGTTACCGTGAAGCAAGCATTAAT GGAAACGTCGAGAAGAGGCTTTCGCCGCAATTGGGTGAAGTCTCTAGTGAGTTTCAGCGTTGGAGAAGCAGCAAGAGTGA TAGACAGGAGAATGAGAAGAAGCAACAAGATAAGTCTCAAAGCGTAGCGAGTGATTTGGAAGCGGAATTGCAGAAAGCCA TCAAGGCTGCTTCCTCATAG
Protein sequence (LotjaGi2g1v0416000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLSLKFHGDGTEEDQQHSTQIMTAKVPITVLNNPFISAVKATTTTANSESSEFSFSLSTNFPTGPSFKLAYSPTASSLP PFSLSLKSGLGTSGSPRHSPLTFSANLSLSLSPTTNTFTPVPSFFLHFKPQFGHFSLNKTVFSEPKSDPSTDPVSLPTAP QPDHRESQIGRKGFVVDGSSGWQELKLEPYDVVSERGLTEKNGAKHGLSPGVAVMARTVVPLTQGLSLNFRWGVNFPRNL VLKLPYLTVSKIGLERVVEEVKQSKQSQDSSDGDKQLLKGVCFWMKRDLENVEKENKEMKRVLEEMKVGVSTSYREASIN GNVEKRLSPQLGEVSSEFQRWRSSKSDRQENEKKQQDKSQSVASDLEAELQKAIKAASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 379 | 379 | 2.7E-127 | – | |
| PANTHER | 1 | 379 | 379 | 2.7E-127 | – | |
| MobiDBLite | 143 | 171 | 29 | - | – | |
| Coils | 285 | 309 | 25 | - | – | |
| MobiDBLite | 325 | 366 | 42 | - | – | |
| MobiDBLite | 340 | 360 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0416000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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