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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0418800 |
| Transcript ID | LotjaGi2g1v0418800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Jasmonate zim-domain protein; TAIR: AT1G19180.1 jasmonate-zim-domain protein 1; Swiss-Prot: sp|Q9LMA8|TI10A_ARATH Protein TIFY 10A; TrEMBL-Plants: tr|A0A1J7G2F3|A0A1J7G2F3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0418800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91714019..91718295) extracted from Lotus japonicus Gifu genome v1.2.
CAATGAATGAATCATGTAACAACGGGACGCGGAGTTCACATTTCCACTAGCTCTGTCGGCTGTATTCACGAAAAGCTGTC TTCAAAACACACACACACACACAAATTTAATTAAACACGTGATCTAATTCGACATCTTCATCAAGATAAAAAGAAGAAGA TAACATTCAAGAGGTGTGCATCACTGACTCCATTTCCTTCCTTTGTTAACACACACTCATCCATTTTCTTATTGTGTAGT CAGTGCCTGAAGGACAAAGACAACAACATCAAGGACTGGTATGTATGTTCATCTCTTACTCATCATGTTTCTTTTTGGAT TTCAGTTTCTCTGTAATAGGAAGAAAGAGGATTTTGAATTGATGTATGAAATATGGATGGATCTTCATCTTCATGTTTTG TTGGCTTAATTGTTTCTTGTTGCTCCTTTCCAATGGATTGGTTCTGAAATAGAATTAAAGAAATGCTCCAAGTTGCTTGA TCCTCTCTTTCAATTCACTTTGATTTTTAGGGAATTTAGATAATAGCATGTTTGGATCCGCTTTTCTGTCTTCAAAATTA ATTGTCAAACCCTAAAGCTACTCAACTCCCTAAAATTAATTGTAGGAATATTTTCTAAACATTTAGTTAAGAATGACTTC TTATTGAAAAAGTAAACAAAGAAGAGTAAGAGGGGGGAAATCGCCAAATTGTGAAATTTAGTGGGAGCATATTCATATGG TTAAGTTTAGAAGTCTTTTTGAGTTGTCTAAAATTCTCTCCTTAAATACTACATCACTGCTTTGCCTAAAATGCATTGTT TTTGTGTGTGTGGACTGTGGAATTCACTGGAAGAAAATGAAGAAAAGCAAAAGAGTCTTTTAGGCACATATTCTGATCCT GGATTCATTGGACTTTTGTAAAATTTCTGAATCAACTATTTTTTACAGGTTTGCCTGAGACATCTTGTCAATCTGCAACC AGTTCAAGCTTGAAGTTATTCAAACCGAGGAGAACAACATGACTTCTCAGAACCAGACATCTATGAACTTATTCAGTGTA ATGAAGCCTGTGACCAAGGAGCCTAAAGGTACACAGATGACAATCTTCTATGCTGGGCAAGTTTATGTGTTTGATGATTT TTCTGCTGACAGAGCCAAGGAGATCATGTCCTTGGCCACCAAAGGAAAAAACACTGAAAGCCAGAACAACTACCCTAATA AGGGAATTCAGAGACACCCTTCATTTCCTGCTAGTTCTAGCAGGCCATTTCCTTTTCATGTGAATAATATCATGCCTAGC ACTGCTAGCAATTTGATCCAAGAGCAATCTCAAGCACCACCCACACCTATTGTTGTTGGTAATTTCTATGGATCTCTTAT ATTTGAGATGATTAAAGATTTTTGTCACGGATTATGAATTTCTGATTATGACTTTCCTTTTTTGTTCAGATCTTCCAATG ACTAGGAAAGCTTCACTTTACCGATTCTTGGAGAAAAGGAAAGATAGGTAGGCTGAAATTTCTCAACACATATAAGTAAA ACTTAACTGCAAAGTGTTGTTTGTAGCCTTTATGGGTGTATGTGTCTCAAATTTCTTAGCTGTAGAAGAATCAAGATAAC TTATTCACGAGATGCATTGATGTTTAGACTCTTTGTGTGTGTTTAGATACCTGTTTAGTGTAATGCCAACAGATTTCTAT CTCAACCCATAAGAAGATTTTCATTTACTTTTTCATCTCGAAGCACTACTGATGTTGTTTGCACTTGTGGCAACAAATAT ACGAACATAGCCTCCTTCCTTTGCAAATAAAATTCTCCCCTTACTTCTTGTTCCTAAATAGTCTGAGTCATAGGAAATTG ATATATGAATAAAAAACAAAAGTCATTATGTAGTAAATGGGTTTTGTTGTGAGAACTATGTAACCTTTTTTAATTACGCT GTTTTGGATCCATTAATTGATAGCATTGTTTATGTTTGTGCAGAATTGCTGCCAGAGCACCATACCAAGCAAGCAGTCCC ATGGCAAAAGCTAATAAGACTGCTGATGAATCCATGTCATGGCTGGGTTTGGCACCTAAATCACCACAAGACAAATCTGA GAGTAGCTCCAGCTCTGTGTTATTTTAATAATTCTTTGTTAGAGGGACTGGACCACTCTATATTTATGTATGATGTAGCT CAGGCTTATCATTACCATAATTAAAAGCAAAGTTCTTTTGTGTTAGCTTAATTCATTGTCCACTAGTTTTTACTTAGGCC ACATATGGCTATTGTGTTATAGTAAGTTATAACATATCTGCATATCCTTCGGCGAATGATTCATTCAACTTTTGATCAGC CTCACAGTAGTATTGTAAACCAGGAGAGACAAGGCACCAGTTCTCATGATCAGACCGATCAGCCAAAGCCGGAAAGGAGT GATGGCCAAAGACAACAGCGTTTTCGGTGACCGGAATGTGTTTCCGCATTTTAGGGTAAACAGGATTCTCACCGTTAATT AACCCGTTCAAGTGTTCAAGGAGGGCGAAAATTCCAGGAACATTGGGGAGAAAGTGCGCGTGTTGTTCTTCACGAAGAAA ATTGCGACGTTTCGTTGGGCCGGGGACGGTGGGGACGCGAGGGTAGACCTTGCCGTAGTTTGAAAATTCCGGCTGGGAGG AGCAGATGGTTTTGAAGAGTGGGAGGAGGGGACCAGGGATGGGGAGAGACTCCAACGGGTGGAAGTCGAGAAAGTTGAGG AGGAATTGATGGTGATCGAGGTTTAGGGCGCCGACCTCTTCTCCGGTTCGGAGACATTGGATCCAGAACAATACTCCGAA GTAGAGGCGGAGGATGTATGGGTGGTAGTTAGGATAACTTCGCTTGAAATGAAAATGATCGACTAAAGACTTGTTGATGT TGTGAACTGTATAGTCCATCATATGACAGGAGGGATAGTAAAATGATAACCTATATCTTGGAGCGTAAGTAATGCGACTT CCAGCAAAGACATTGAGCATGCTATTGCAAACTGAGGAAGTCACATCAGGTGTAGGCTTCATGATAATACGGTGGTGGAG TAGTCTGCTACAGGGTGAAGATCGTTTTTGGTTCTCTTAATCAACTTGAGCTGCGATTGGCAATTTGGCATTCTGAATAT GGAACCGTATTAATAACTACAAAATGTGGCTTTTCCACTTTCCAACATGTGTGTCAAAGAAAAAGTGATGCACCCCCTCA TCAAATCCACAACTTCCGAGGTGATGGACAGAGTTTTAGAGGAGAAAGACTGCAAATACAAGTACCAAAAAGTTAAGTAG ACTGCATAATAGCAAAGAGCCAACGACTGCTCTAGTACATTCACTTTTATGGCGGTTTCAAAAACTATCACAAAAATAGA TGTACGAGAGTGTGGTGTTACGAAATAGTACAAAATAATATATATGTAGGAGTAAATTTACTAGCAACTTTAAGAAAATG TCCTCAGATAATATCATTCTTCTGTTCATAATTCTTCCAGGGACACAGCTTTATACTCTCCTTTGAAATTATAGGAACTT CCGTGCAAAAAACAAAATCAAGTAAAGAAAAAGTTTATAAAAAAAAAAGGGTGAAGAAGTTACAACAAAGTTATATCAAC AGGACTTGGAAGCAGAGTAAAAAAAGGTATAAGCTTTCAAACCAAAAGAATTGCAGTGTATGCGCAGCGGCGCAGCAACA GCTTGTTTGAAATTTTCAATCTTCATGGCTTTTCTCAATTCTTCGCAGCGACAAGGGAACAGGTTTTTCCAAAACGGTCA CGTTAACGTTGTTCCAAACATCAGACAATGTTGGGAGTGTCGCAATTTTCTCAGCAACATTCATATCTTCTGGAAGAACA GAACCAAAGACAGTGTATTCATGTTTCCACTCAGAATGGTCAGCAAGGCTAATAAAGAATTCAGGACCAGAACCAATCCA AGCAACTGAGCCCCTTCTTAAGGTTGGACAATCTTCCACAGGAAGTTTATTGAATGGTGTGCCATAAGCTTCCAGAGTCC CTTGAATTAATGCATAAGGGGGACCAAATGAAGCCTGGAAAATGAAGACTCGTTTACTATCATTCAACATTACAAATTAT ACAAACATCATGGTTTTGCATTGACACTGTGAAGTACTATGCACATAAATTCTTTTTTTCCTCCTTTGGGAATAACATGC AAATGACCCCAACAGAAGTACAACAGGAGTGATGTTTTGTTTCTTGTTTGGAACAAACAAAAAAGAGAAGAAAAAAAAGT AGTCTTTGAATACAAAGAATGTATATGGATTTCTAGC
CDS sequence (LotjaGi2g1v0418800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCTCAGAACCAGACATCTATGAACTTATTCAGTGTAATGAAGCCTGTGACCAAGGAGCCTAAAGGTACACAGAT GACAATCTTCTATGCTGGGCAAGTTTATGTGTTTGATGATTTTTCTGCTGACAGAGCCAAGGAGATCATGTCCTTGGCCA CCAAAGGAAAAAACACTGAAAGCCAGAACAACTACCCTAATAAGGGAATTCAGAGACACCCTTCATTTCCTGCTAGTTCT AGCAGGCCATTTCCTTTTCATGTGAATAATATCATGCCTAGCACTGCTAGCAATTTGATCCAAGAGCAATCTCAAGCACC ACCCACACCTATTGTTGTTGATCTTCCAATGACTAGGAAAGCTTCACTTTACCGATTCTTGGAGAAAAGGAAAGATAGAA TTGCTGCCAGAGCACCATACCAAGCAAGCAGTCCCATGGCAAAAGCTAATAAGACTGCTGATGAATCCATGTCATGGCTG GGTTTGGCACCTAAATCACCACAAGACAAATCTGAGAGTAGCTCCAGCTCTGTGTTATTTTAA
Protein sequence (LotjaGi2g1v0418800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSQNQTSMNLFSVMKPVTKEPKGTQMTIFYAGQVYVFDDFSADRAKEIMSLATKGKNTESQNNYPNKGIQRHPSFPASS SRPFPFHVNNIMPSTASNLIQEQSQAPPTPIVVDLPMTRKASLYRFLEKRKDRIAARAPYQASSPMAKANKTADESMSWL GLAPKSPQDKSESSSSSVLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 162 | 157 | 3.6E-46 | – | |
| PANTHER | 6 | 162 | 157 | 3.6E-46 | ||
| SMART | 20 | 55 | 36 | 8.2E-15 | ||
| ProSiteProfiles | 20 | 55 | 36 | 16.334 | ||
| Pfam | 21 | 53 | 33 | 5.5E-18 | ||
| Pfam | 116 | 141 | 26 | 6.4E-13 | ||
| MobiDBLite | 138 | 180 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0418800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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