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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0427000 |
Transcript ID | LotjaGi2g1v0427000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF1442 family protein; TAIR: AT2G45360.1 ankyrin repeat/KH domain protein (DUF1442); Swiss-Prot: sp|P40193|PTSJ_SALTY Putative transcriptional regulatory protein PtsJ; TrEMBL-Plants: tr|G7KG69|G7KG69_MEDTR DUF1442 family protein; Found in the gene: LotjaGi2g1v0427000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92453592..92455505) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATCCAAAACCAGCAACAGAGTCTGTATGAAAAAGTTAAGCAGTTAATGCTCCTTTCCCCATAGCATTCATTATTT CGGTCGCCTTACGCAGAAAGCACCGAGAAAATTTCAAACTTAATTGCCAATTCGAGTCTCAAATGTCAACAACACAACAC TACCCGCACCGTTATCGTAATCTCACACGTAGGATTCACATCACAACCACGAAAAGTCAATGGTCCATTGCTCCTACTCT TGTTCACCACTCCATGTTCCTTTATAAATAAGCCCCTATTTGACAATTTCGCAACCACACTTCAACCAACAACAGAAACA CCCAGCATCAAAACACACTCAGAAAGAAATGAAGCTAGTTTGGTCTAAAGAGAGAGCATCCAACGCTTACATCGACACAG TTCAATCTGTAAGTACTAGTGAATAGTGATAGTGATTATTGAATATTCAACCATTTTCAGTTTTCTTTACTATTAATCTA ATACTCTGTTCTGATGTTTTTATTTTCCTTTTTTGTGCAGTGTCAGATTTTCCGGGAATCAGGTGTGGCGGAGCTGATTT CCGCCATGGCGGCGGGGTGGAACGCGCAGCTGATTGTCGAGACATGGTCACACGGCGGAGTTATCCCCACCAGCGTGGGT TTAGCCGTGGCGAGGCGCCACACGGGTGGACGGCACGTGTGCATAGTCCCTGATGAACGGTCGAGAACAGAGTATGAAAA AAACATGGCTAAGGCGGGCATGTCGCCGGAGATTCTGGTGGGGGAGCCGGAGGAGGTGATGGGTGGTTTGGTCGGAATAG ACTTCTTGGTGGTGGATTCACGGCGGAAGGATTTTGCTAGAGTTTTGAGGGTCGCCAAGTTGAGCGGCAAGGGTGCTGTG TTGATCTGTAAGAACGCCAACTGTATCTCCAGGACTGGTTCGAGTTTCATATGGCGGAGCGTGGTGGCTGAAGGATCGCG CCGCCTTGTCCGGTCGGTGTTTCTTCCAGTGGGGAAGGGGCTTCACATGGCGCACGTGTCAGCCAGCGGTGGGGACAGAT CGGAGGCAAAGGTTAAGGGTGGTCGTGGACATAAATGGATTAAGCATGTTGATCAACGATCAGGGGACGTGCACTTTATT AGAAGATGAATTCATTTTTGTTTTTTGTCTAGATCACTTCCTAGCAGACCCAATTTTTACCCCTTCTGTAAATAGAGACA GTTTAATTTGAATGGAGTAACAAACTGATCAACATAACTTTTCAATTTTCTTACAGTATTTATATATGTACCTTCAAACC TTCATTGCTTCTTGGTAGCATGTCAATTTAATACAAAAGGCACATTTAGAACACTTATTTTTAATTCCTTTAAAAAAAAG TTTAATGGCTGAAATCTAGAATGTTCTCGTTATTAGGATTATTAGGTCAACTGTAAGGCTCATTCTAATTAGGCCAAACT TAGCTCTAGAATGTCGATGTTAGTACAAATTTGTATTCCCCTTTCATTGAGAAATTAATAGAAAATTGAAGCATTTTATC TTTCTCTTTATTTTCTTAGTTTTAGTTCTTAGGGTTCTTAGATTTCTTTCTTGATATAAATTAGCTTCTTGTCAAATAGT GCTGTCATTATTGTACTCATGCATCCCATGGATCTATTTCGTCCATTGTTGCATTCTTCAAACCTACATCATTCATCAAT TCAGTCCGAGATGTTTGCTGTTTTTAATGGCAATTTTTTCTGGGCAATTTTCTACAAAATATGGGTTCATGGATCAAATT TCCTACCTGCATAGTCATCCACCTTCAATCCCACACAAACCTCACCTTACCAACATTACCAACATATTTAGATCGATTTT TTGATTCTCACACCGATGAAAAATTCAATTAAGGACTGGCTTGATCGACGGTGATAAATTCAGGGACATTTAAA
CDS sequence (LotjaGi2g1v0427000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTAGTTTGGTCTAAAGAGAGAGCATCCAACGCTTACATCGACACAGTTCAATCTTGTCAGATTTTCCGGGAATC AGGTGTGGCGGAGCTGATTTCCGCCATGGCGGCGGGGTGGAACGCGCAGCTGATTGTCGAGACATGGTCACACGGCGGAG TTATCCCCACCAGCGTGGGTTTAGCCGTGGCGAGGCGCCACACGGGTGGACGGCACGTGTGCATAGTCCCTGATGAACGG TCGAGAACAGAGTATGAAAAAAACATGGCTAAGGCGGGCATGTCGCCGGAGATTCTGGTGGGGGAGCCGGAGGAGGTGAT GGGTGGTTTGGTCGGAATAGACTTCTTGGTGGTGGATTCACGGCGGAAGGATTTTGCTAGAGTTTTGAGGGTCGCCAAGT TGAGCGGCAAGGGTGCTGTGTTGATCTGTAAGAACGCCAACTGTATCTCCAGGACTGGTTCGAGTTTCATATGGCGGAGC GTGGTGGCTGAAGGATCGCGCCGCCTTGTCCGGTCGGTGTTTCTTCCAGTGGGGAAGGGGCTTCACATGGCGCACGTGTC AGCCAGCGGTGGGGACAGATCGGAGGCAAAGGTTAAGGGTGGTCGTGGACATAAATGGATTAAGCATGTTGATCAACGAT CAGGGGACGTGCACTTTATTAGAAGATGA
Protein sequence (LotjaGi2g1v0427000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLVWSKERASNAYIDTVQSCQIFRESGVAELISAMAAGWNAQLIVETWSHGGVIPTSVGLAVARRHTGGRHVCIVPDER SRTEYEKNMAKAGMSPEILVGEPEEVMGGLVGIDFLVVDSRRKDFARVLRVAKLSGKGAVLICKNANCISRTGSSFIWRS VVAEGSRRLVRSVFLPVGKGLHMAHVSASGGDRSEAKVKGGRGHKWIKHVDQRSGDVHFIRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 222 | 222 | 2.9E-111 | – | |
PANTHER | 1 | 222 | 222 | 2.9E-111 | ||
Pfam | 1 | 222 | 222 | 4.2E-87 | ||
Gene3D | 7 | 185 | 179 | 9.2E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0427000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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