Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0436600 |
Transcript ID | LotjaGi2g1v0436600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Endoglucanase; TAIR: AT4G23560.1 glycosyl hydrolase 9B15; Swiss-Prot: sp|P22503|GUN_PHAVU Endoglucanase; TrEMBL-Plants: tr|Q43105|Q43105_PHAVU Endoglucanase; Found in the gene: LotjaGi2g1v0436600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93312269..93315463) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAAGGCACCATAAACATGGAAAATAATAAACATGACGCTCAAGGGGAATGGGGTGAGAAAGATTTTGTTCAAACTCT TAATGAAAGTACCATCTTCGTGACTCATATAGTTTGATTAGTTCTTATATTTGCGCATAGTGACCAGTTCACGTCACGTT ATCCCCACGACGTCAAACTGTCAAAGTCTTTCCCATGTTCGATTGTTCGTAAGTTATGCACTTTTCACTTGTACATTTTA GGTACCGGCCTTTAATTTTCTCCCTATATATACGAGCAATTAGTTCAGCTGAATCCTGCAGAGTTGATTAATTGATAGTT ACTAATTAAGTCATGGGGTATTACAATTTGTTGGTCACTGGTTTGTTCTTGTGGTGTGCCATGTTTGGTCACAATGGAGT GCTAGCCATGATGGATGGGGAGATAATAATGAATTCCTCCTCAGCTTCTTCTAACTATGACTATGCAGATGCTGTTGGCA AAGCCATCTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTACCCTCCAATCAAAGGGTCCAGTGGAGGGGGGATTCAGCT CTCTCTGATGGCAAGCTTCAAAATGTATATGACATTATAATATTAATATACATGTTTTTCATACATTTATTTCATATTAT ATATATGAACCATATATTATGTTTGGCAGGTGAATTTGGTGGGAGGATACTATGATGCGGGTGATAATGTGAAGTTTGAA TGGCCAATGGCGTTTACAGTGAGCTTATTGAGTTGGAGCGGTGTTGAGTATGAGAAGGAGGTATCTTCAGTGAAGCAGCT TGATTACCTTCGCAGTGCTATCCGCTGGGGTGCAGATTTCATTTTGCAAGCTCACACTTCCCCAACCACCTTATTTACAC AGGCATGTTTCTCTACAATCATATTTGTTATAAACTCAAATACTATTAGGCTTAGTGTTGAGAATTTAAGTGAGTTAAAG TGTCACATTGGTTAGCAAAACAATATAACTAGTAAAGATGTGGTGTCTATTGGTGTTCTTCAGTAGCTCATTATTTTTGT TATGATTGATAGGTAGGAGATGGGAACTCAGATCATCAATGTTGGGAGCGGCCGGAAGACATGGATACACCGAGAACACT CTACAAGATTGATGCTAATTCTCCTGGAACTGAAGTTGCAGCTGAGTCTGCTGCTGCTCTTGCTGCTGCTTCAATTGTCT TCAAGAAAACAGATGCCACTTATTCGTCAAAGCTATTAAGCCAGTCAAAATCAGTAAGCAATTCAAGCAGCATCATTTAT TTTCATTCATGACATGAGATTAATCATGATGATCAATTGATCAGGAGTTGGATTTTTGCCACTTCAAATCTCTTTTGTTT GAATTGTAGTAGCTACCTATTAATTTAAGTTATTTTTGCTAGGTGATACAAAAATTTCTAACTTAACCTTATATATTGAT AATGTTTAATTTGCAGCTGTTTGATTTTGCTGACAAGTACAGAGGTTCTTACTCAGGCTCTTGCCCATTCTACTGTTCCT ACTCTGGTTACCAGGTAGAATTTAAACTATTGCCTGTTGAAACATTTAAACACTAGTTAATCTTTCATAAATCATTCATT GAGGCTTTCATTTTTAACTATGTACAAAAAAGGATGAACTGTTATGGGCTGCTTCATGGCTATACAAGGCTAGTGGAGAA AGCAAGTACTTGAGCTACATCACAAGTAACCAAGGTTGGAGTCAGGGAGTTTCTGAGTTCAGCTGGGATAACAAATTTGT TGGAGCTCAGACATTACTCACAGAGGTATTTATATATCTAATTAACAAAGTCGCATAGTATGTTTGCATTTGTTCCGAAC ACACAATTCAAATCACGGTAACTTCATAAGCTACATTTATAGCGATTTCCCAAAAAGAAATAATGAGATTTACAACGGCA GAATCAAACAGGCTATAGAACTCATTATTTCTACATCTTTTTATGTTCTATTTTTGTTTTCTCCAGGAATTCTATGGTGG GAAGAAGGACTTGGCCAAAGTTAAGAGTGACGGCGAATCATTTATATGTGCAATGATGCCAGGAAGTAGCTCTCAACAGA TTAAAACAACTCCTGGTAACACTACATATGAGCAATCAGTCTTATTTGAAAGAAGAAGAAAAAATTGTGATTGACAGAAT GAGCTTAACTTGCTGTATTGTTAACTTGTCTATTATAGGTGGACTTCTGTATACTAGAGATAGTAGTAATTTGCAATATA CCACAACCTCAACCATGGTGCTATTCATTTTCTCCAACATCCTAACCAGAAATCATATTGATGGAATCCAATGTGGCTCC ACTCATTTCACCCCCTCTCAAATCAGAGCCTTTGCCAAAACACAGGTATATATACTAATCTGACTATGAATTCTTCTCAA ATAGTTCAAATCTTGTACACAACAAAAAAATAAAAATTATCATGTTAATCTCAAGAGGCATACATCATACATGTGAATGT GATGTTAATGTGTGCAATTAATGCAGGTGGATTACATACTAGGAAACAATCCCATGAAGATGTCTTACATGGTGGGATTT GGCAGTAAATACCCAAAGCAATTGCATCACAGAGGCTCTTCTATCCCTTCAATGAAAATTCACCCAGCCAAAGTGGGTTG CAGTGATGGTCAATCACAGTATTTCTCTTCCCCTAATCCAAATCCCAATGTTCATGTGGGTGCCATTGTTGGAGGCCCTA ACTCCAATGACCAATTCAATGATGCAAGATCTGATTATTCTCATGCTGAACCCACCACATATATGAATGCTGCTTTCGTA GGTTCAGTAGCTCCTTTGCTTGGAGAAACGAGGACCTTGCAGTTTCCCCAAATTGTTGACAGGAAAGCCTAATGAAGCTG ATAGTCCAGTAGAACATATGCCTCAATATATGTTTGATTAACTAATCTGATAATATAATTTACCCCAGCCATATATACAC ATTCATGTTAAGATTATCTCACATACATTTGTCATTACAAGTGAATGCTTGAATCGGTTTTTGTCGACAATCCAAGGCTT AGGCATGATGTACATCTAGATTAATTATAAACAACAACAGAAAGATAAACAACATTGAACCATCCAAAAGGCACCTTGTT GATCACGGATACCAGTGAACAGCTACAAATAACAATTCCAAATTTCAATTTGCATACTTAACAGGTTTTTTTTTT
CDS sequence (LotjaGi2g1v0436600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACACCGAGAACACTCTACAAGATTGATGCTAATTCTCCTGGAACTGAAGTTGCAGCTGAGTCTGCTGCTGCTCT TGCTGCTGCTTCAATTGTCTTCAAGAAAACAGATGCCACTTATTCGTCAAAGCTATTAAGCCAGTCAAAATCACTGTTTG ATTTTGCTGACAAGTACAGAGGTTCTTACTCAGGCTCTTGCCCATTCTACTGTTCCTACTCTGGTTACCAGGATGAACTG TTATGGGCTGCTTCATGGCTATACAAGGCTAGTGGAGAAAGCAAGTACTTGAGCTACATCACAAGTAACCAAGGTTGGAG TCAGGGAGTTTCTGAGTTCAGCTGGGATAACAAATTTGTTGGAGCTCAGACATTACTCACAGAGGAATTCTATGGTGGGA AGAAGGACTTGGCCAAAGTTAAGAGTGACGGCGAATCATTTATATGTGCAATGATGCCAGGAAGTAGCTCTCAACAGATT AAAACAACTCCTGGTGGACTTCTGTATACTAGAGATAGTAGTAATTTGCAATATACCACAACCTCAACCATGGTGCTATT CATTTTCTCCAACATCCTAACCAGAAATCATATTGATGGAATCCAATGTGGCTCCACTCATTTCACCCCCTCTCAAATCA GAGCCTTTGCCAAAACACAGGTGGATTACATACTAGGAAACAATCCCATGAAGATGTCTTACATGGTGGGATTTGGCAGT AAATACCCAAAGCAATTGCATCACAGAGGCTCTTCTATCCCTTCAATGAAAATTCACCCAGCCAAAGTGGGTTGCAGTGA TGGTCAATCACAGTATTTCTCTTCCCCTAATCCAAATCCCAATGTTCATGTGGGTGCCATTGTTGGAGGCCCTAACTCCA ATGACCAATTCAATGATGCAAGATCTGATTATTCTCATGCTGAACCCACCACATATATGAATGCTGCTTTCGTAGGTTCA GTAGCTCCTTTGCTTGGAGAAACGAGGACCTTGCAGTTTCCCCAAATTGTTGACAGGAAAGCCTAA
Protein sequence (LotjaGi2g1v0436600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTPRTLYKIDANSPGTEVAAESAAALAAASIVFKKTDATYSSKLLSQSKSLFDFADKYRGSYSGSCPFYCSYSGYQDEL LWAASWLYKASGESKYLSYITSNQGWSQGVSEFSWDNKFVGAQTLLTEEFYGGKKDLAKVKSDGESFICAMMPGSSSQQI KTTPGGLLYTRDSSNLQYTTTSTMVLFIFSNILTRNHIDGIQCGSTHFTPSQIRAFAKTQVDYILGNNPMKMSYMVGFGS KYPKQLHHRGSSIPSMKIHPAKVGCSDGQSQYFSSPNPNPNVHVGAIVGGPNSNDQFNDARSDYSHAEPTTYMNAAFVGS VAPLLGETRTLQFPQIVDRKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 330 | 330 | 2.9E-192 | – | |
PANTHER | 1 | 330 | 330 | 2.9E-192 | – | |
Pfam | 1 | 319 | 319 | 1.5E-83 | ||
SUPERFAMILY | 1 | 326 | 326 | 1.06E-98 | ||
Gene3D | 1 | 337 | 337 | 3.1E-102 | ||
ProSitePatterns | 223 | 249 | 27 | - | ||
ProSitePatterns | 297 | 315 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0436600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…